Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:4528726-5461994

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm34259 17 4612379 to 4633520 21141 + lncRNA gene predicted gene, 34259
4930517M08Rik 17 4634978 to 4637471 2493 + lincRNA gene RIKEN cDNA 4930517M08 gene
Gm23186 17 4678020 to 4678126 106 + snRNA gene predicted gene, 23186
D17Mit223 17 4780494 to 4780618 124 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 223
Gm49780 17 4792646 to 4792959 313 - pseudogene predicted gene, 49780
Gm34371 17 4794550 to 4797430 2880 + lncRNA gene predicted gene, 34371
Tssr142376 17 4794686 to 4794698 12 + TSS region transcription start site region 142376
Tssr142377 17 4794704 to 4794727 23 + TSS region transcription start site region 142377
Tfv1 17 4804477 to 65330362 60525885 QTL total food volume 1
D17Mit19 17 4804477 to 4804658 181 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 19
4930579D07Rik 17 4851698 to 4892987 41289 - lincRNA gene RIKEN cDNA 4930579D07 gene
Cpgi8551 17 4854106 to 4854336 230 CpG island CpG island 8551
Tssr142378 17 4880579 to 4880581 2 + TSS region transcription start site region 142378
Gm4828 17 4880626 to 4881115 489 + pseudogene predicted gene 4828
Cpgi8552 17 4907893 to 4908850 957 CpG island CpG island 8552
Gm34507 17 4908010 to 4914351 6341 + protein coding gene predicted gene, 34507
Tssr146296 17 4908539 to 4908571 32 - TSS region transcription start site region 146296
Gm41517 17 4945152 to 4946814 1662 - lincRNA gene predicted gene, 41517
Gm34625 17 4954198 to 4960852 6654 + lncRNA gene predicted gene, 34625
Cpgi8553 17 4993726 to 4996994 3268 CpG island CpG island 8553
Tssr142379 17 4994286 to 4994373 87 + TSS region transcription start site region 142379
Arid1b 17 4994332 to 5347656 353324 + protein coding gene AT rich interactive domain 1B (SWI-like)
Tssr142380 17 4994491 to 4994531 40 + TSS region transcription start site region 142380
Tssr4984 17 4994612 to 4994658 46 + TSS region transcription start site region 4984
Tssr142381 17 4994697 to 4994730 33 + TSS region transcription start site region 142381
Tssr142382 17 4994904 to 4994953 49 + TSS region transcription start site region 142382
Tssr142383 17 4995664 to 4995693 29 + TSS region transcription start site region 142383
Tssr142384 17 4995902 to 4995959 57 + TSS region transcription start site region 142384
Tssr142385 17 4995982 to 4995989 7 + TSS region transcription start site region 142385
Tssr142386 17 5000550 to 5000553 3 + TSS region transcription start site region 142386
Tssr142387 17 5012808 to 5012832 24 + TSS region transcription start site region 142387
Tssr142388 17 5012841 to 5012852 11 + TSS region transcription start site region 142388
Tssr142389 17 5057966 to 5057969 3 + TSS region transcription start site region 142389
Tssr146297 17 5058488 to 5058503 15 - TSS region transcription start site region 146297
D17Jcs97 17 5069733 to 5069942 209 DNA segment DNA segment, Chr 17, John C. Schimenti 97
Tssr142390 17 5072989 to 5072992 3 + TSS region transcription start site region 142390
Tssr142391 17 5089896 to 5089901 5 + TSS region transcription start site region 142391
Tssr142392 17 5090081 to 5090122 41 + TSS region transcription start site region 142392
Cpgi8554 17 5091498 to 5091697 199 CpG island CpG island 8554
Tssr142393 17 5103243 to 5103248 5 + TSS region transcription start site region 142393
Gm15599 17 5110766 to 5112110 1344 - pseudogene predicted gene 15599
Tssr142394 17 5134934 to 5134938 4 + TSS region transcription start site region 142394
Tssr142395 17 5152647 to 5152658 11 + TSS region transcription start site region 142395
Tssr142396 17 5160946 to 5160950 4 + TSS region transcription start site region 142396
Cpgi8555 17 5189663 to 5190103 440 CpG island CpG island 8555
Tssr142397 17 5189899 to 5189917 18 + TSS region transcription start site region 142397
Tssr142398 17 5195701 to 5195737 36 + TSS region transcription start site region 142398
Gm34854 17 5196277 to 5217166 20889 - lncRNA gene predicted gene, 34854
Tssr146298 17 5217279 to 5217309 30 - TSS region transcription start site region 146298
Tssr142399 17 5227897 to 5227898 1 + TSS region transcription start site region 142399
Tssr142400 17 5242990 to 5242999 9 + TSS region transcription start site region 142400
Tssr142401 17 5278453 to 5278464 11 + TSS region transcription start site region 142401
Tssr142402 17 5278502 to 5278507 5 + TSS region transcription start site region 142402
Tssr142403 17 5324960 to 5324965 5 + TSS region transcription start site region 142403
Tssr142404 17 5332544 to 5332582 38 + TSS region transcription start site region 142404
Tssr142405 17 5334822 to 5334831 9 + TSS region transcription start site region 142405
Tssr142406 17 5334837 to 5334850 13 + TSS region transcription start site region 142406
Tssr142407 17 5336670 to 5336684 14 + TSS region transcription start site region 142407
Cpgi8556 17 5341860 to 5342748 888 CpG island CpG island 8556
Tssr142408 17 5343972 to 5343978 6 + TSS region transcription start site region 142408
Cpgi8557 17 5397324 to 5397987 663 CpG island CpG island 8557
Tssr142409 17 5401007 to 5401018 11 + TSS region transcription start site region 142409
D17Jcs98 17 5403550 to 5403768 218 DNA segment DNA segment, Chr 17, John C. Schimenti 98
Tssr142410 17 5404075 to 5404082 7 + TSS region transcription start site region 142410
Tssr146299 17 5406632 to 5406664 32 - TSS region transcription start site region 146299
Tmem242 17 5410870 to 5440259 29389 - protein coding gene transmembrane protein 242
Gm29050 17 5412064 to 5413483 1419 + antisense lncRNA gene predicted gene 29050
Ldhal6b 17 5417323 to 5418767 1444 - protein coding gene lactate dehydrogenase A-like 6B
Cpgi8558 17 5418294 to 5418803 509 CpG island CpG island 8558
Tssr146300 17 5418664 to 5418742 78 - TSS region transcription start site region 146300
Gm22475 17 5421464 to 5421565 101 + miRNA gene predicted gene, 22475
Tssr146301 17 5440229 to 5440263 34 - TSS region transcription start site region 146301
Lmr7 17 27496965 to 4804477 -22692488 QTL leishmaniasis resistance 7
Mnic1 17 45359340 to 4804477 -40554863 QTL macronutrient intake, carbohydrate 1
Alan1 17 46158776 to 4804477 -41354299 QTL alloantigen response 1
Kdnw3 17 47574740 to 4804477 -42770263 QTL kidney weight 3