Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:44221208-45251219

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clic5 17 44188584 to 44280172 91588 + protein coding gene chloride intracellular channel 5
Tssr144755 17 44229777 to 44229781 4 + TSS region transcription start site region 144755
Tssr5123 17 44247487 to 44247490 3 + TSS region transcription start site region 5123
D17Mit136 17 44255717 to 44255861 144 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 136
Tssr5124 17 44279902 to 44279917 15 + TSS region transcription start site region 5124
Gm49872 17 44366568 to 44367903 1335 - lincRNA gene predicted gene, 49872
Runx2 17 44495987 to 44814797 318810 - protein coding gene runt related transcription factor 2
D17Mit269 17 44545676 to 44545810 134 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-269
Tssr144756 17 44561980 to 44561996 16 + TSS region transcription start site region 144756
Runx2os3 17 44561990 to 44563172 1182 + antisense lncRNA gene runt related transcription factor 2, opposite strand 3
Tssr148162 17 44607500 to 44607520 20 - TSS region transcription start site region 148162
Tssr148163 17 44618575 to 44618579 4 - TSS region transcription start site region 148163
Tssr144757 17 44628189 to 44628193 4 + TSS region transcription start site region 144757
n-R5s27 17 44641025 to 44641143 118 - rRNA gene nuclear encoded rRNA 5S 27
Tssr148164 17 44643577 to 44643579 2 - TSS region transcription start site region 148164
Tssr148165 17 44654425 to 44654465 40 - TSS region transcription start site region 148165
Tssr148166 17 44658533 to 44658559 26 - TSS region transcription start site region 148166
Tssr148167 17 44658584 to 44658590 6 - TSS region transcription start site region 148167
D930007N19Rik 17 44680845 to 44683096 2251 unclassified gene RIKEN cDNA D930007N19 gene
Cfq4 17 44705665 to 49059374 4353709 QTL conditioned fear QTL 4
Tssr5125 17 44709984 to 44710023 39 - TSS region transcription start site region 5125
Runx2os2 17 44710222 to 44713925 3703 + antisense lncRNA gene runt related transcription factor 2, opposite strand 2
Tssr148168 17 44716740 to 44716744 4 - TSS region transcription start site region 148168
Tssr148169 17 44724224 to 44724227 3 - TSS region transcription start site region 148169
Cpgi9178 17 44734085 to 44736924 2839 CpG island CpG island 9178
Tssr144758 17 44734143 to 44734175 32 + TSS region transcription start site region 144758
Tssr148170 17 44735575 to 44735588 13 - TSS region transcription start site region 148170
Tssr148171 17 44735612 to 44735666 54 - TSS region transcription start site region 148171
Tssr144759 17 44735767 to 44735783 16 + TSS region transcription start site region 144759
Runx2os1 17 44735845 to 44737612 1767 + antisense lncRNA gene runt related transcription factor 2, opposite strand 1
Tssr5126 17 44736086 to 44736181 95 - TSS region transcription start site region 5126
Tssr144760 17 44736208 to 44736219 11 + TSS region transcription start site region 144760
Tssr148172 17 44736286 to 44736296 10 - TSS region transcription start site region 148172
Tssr148173 17 44736309 to 44736332 23 - TSS region transcription start site region 148173
Tssr148174 17 44736362 to 44736373 11 - TSS region transcription start site region 148174
Tssr148175 17 44736444 to 44736469 25 - TSS region transcription start site region 148175
Tssr148176 17 44736650 to 44736674 24 - TSS region transcription start site region 148176
Tssr148177 17 44738021 to 44738060 39 - TSS region transcription start site region 148177
D17Mit137 17 44757247 to 44757339 92 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 137
Cpgi9179 17 44776724 to 44777792 1068 CpG island CpG island 9179
Tssr144761 17 44777127 to 44777198 71 + TSS region transcription start site region 144761
Supt3 17 44777171 to 45119294 342123 + protein coding gene suppressor of Ty 3
Tssr144762 17 44777200 to 44777276 76 + TSS region transcription start site region 144762
Tssr144763 17 44777294 to 44777333 39 + TSS region transcription start site region 144763
Tssr148178 17 44814416 to 44814419 3 - TSS region transcription start site region 148178
Tssr148179 17 44814482 to 44814496 14 - TSS region transcription start site region 148179
Tssr148180 17 44814508 to 44814515 7 - TSS region transcription start site region 148180
Tssr148181 17 44814590 to 44814595 5 - TSS region transcription start site region 148181
Tssr148182 17 44814604 to 44814637 33 - TSS region transcription start site region 148182
Tssr148183 17 44814649 to 44814660 11 - TSS region transcription start site region 148183
Tssr144764 17 44839317 to 44839321 4 + TSS region transcription start site region 144764
4930564C03Rik 17 44879770 to 44880295 525 - protein coding gene RIKEN cDNA 4930564C03 gene
Tssr148184 17 44880830 to 44880831 1 - TSS region transcription start site region 148184
Tssr148185 17 44880833 to 44880838 5 - TSS region transcription start site region 148185
Tssr148186 17 44880841 to 44880858 17 - TSS region transcription start site region 148186
Tssr148187 17 44880871 to 44880874 3 - TSS region transcription start site region 148187
Tssr148188 17 44880876 to 44880890 14 - TSS region transcription start site region 148188
Tssr148189 17 45020689 to 45020735 46 - TSS region transcription start site region 148189
Gm35097 17 45147237 to 45151629 4392 + lincRNA gene predicted gene, 35097
Cpgi9180 17 45159238 to 45159539 301 CpG island CpG island 9180
Gm4766 17 45163230 to 45164168 938 - pseudogene predicted pseudogene 4766
Cpgi9181 17 45163531 to 45163988 457 CpG island CpG island 9181
Gm24979 17 45209966 to 45210091 125 + miRNA gene predicted gene, 24979