Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:44001286-45471296

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Modc1 17 27496818 to 45311728 17814910 QTL modifier of Odc1
Hcbip2 17 37482164 to 45311728 7829564 QTL hexachlorobenzene induced porphyria 2
Rcan2 17 43801351 to 44039516 238165 + protein coding gene regulator of calcineurin 2
Gm10498 17 44026251 to 44027398 1147 protein coding gene predicted gene 10498
Tssr144735 17 44026673 to 44026693 20 + TSS region transcription start site region 144735
Tssr144736 17 44038866 to 44038880 14 + TSS region transcription start site region 144736
Tssr144737 17 44038975 to 44038987 12 + TSS region transcription start site region 144737
Gm34857 17 44046517 to 44065109 18592 + lncRNA gene predicted gene, 34857
Cpgi9175 17 44078688 to 44079122 434 CpG island CpG island 9175
Tssr144738 17 44078825 to 44078910 85 + TSS region transcription start site region 144738
Enpp5 17 44078846 to 44086567 7721 + protein coding gene ectonucleotide pyrophosphatase/phosphodiesterase 5
Tssr144739 17 44078912 to 44078950 38 + TSS region transcription start site region 144739
Enpp4 17 44096308 to 44105809 9501 - protein coding gene ectonucleotide pyrophosphatase/phosphodiesterase 4
Cpgi9176 17 44105293 to 44106119 826 CpG island CpG island 9176
Tssr148157 17 44105682 to 44105697 15 - TSS region transcription start site region 148157
Tssr148158 17 44105728 to 44105767 39 - TSS region transcription start site region 148158
Tssr148159 17 44105774 to 44105845 71 - TSS region transcription start site region 148159
Tssr148160 17 44105887 to 44105896 9 - TSS region transcription start site region 148160
Tssr144740 17 44105910 to 44105933 23 + TSS region transcription start site region 144740
Tssr148161 17 44105917 to 44105963 46 - TSS region transcription start site region 148161
Gm34917 17 44105979 to 44124177 18198 + lncRNA gene predicted gene, 34917
Tssr144741 17 44107839 to 44107843 4 + TSS region transcription start site region 144741
Tssr144742 17 44125345 to 44125349 4 + TSS region transcription start site region 144742
Tssr144743 17 44134730 to 44134748 18 + TSS region transcription start site region 144743
Tssr144744 17 44134768 to 44134793 25 + TSS region transcription start site region 144744
Tssr144745 17 44134794 to 44134811 17 + TSS region transcription start site region 144745
Tssr144746 17 44134813 to 44134822 9 + TSS region transcription start site region 144746
Tssr144747 17 44172543 to 44172547 4 + TSS region transcription start site region 144747
Cpgi9177 17 44188171 to 44189143 972 CpG island CpG island 9177
Tssr144748 17 44188564 to 44188594 30 + TSS region transcription start site region 144748
Clic5 17 44188584 to 44280172 91588 + protein coding gene chloride intracellular channel 5
Tssr144749 17 44188603 to 44188618 15 + TSS region transcription start site region 144749
Tssr144750 17 44188625 to 44188632 7 + TSS region transcription start site region 144750
Tssr144751 17 44188653 to 44188664 11 + TSS region transcription start site region 144751
Tssr144752 17 44188665 to 44188676 11 + TSS region transcription start site region 144752
Tssr144753 17 44188689 to 44188702 13 + TSS region transcription start site region 144753
Tssr144754 17 44192719 to 44192722 3 + TSS region transcription start site region 144754
Tssr144755 17 44229777 to 44229781 4 + TSS region transcription start site region 144755
Tssr5123 17 44247487 to 44247490 3 + TSS region transcription start site region 5123
D17Mit136 17 44255717 to 44255861 144 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 136
Tssr5124 17 44279902 to 44279917 15 + TSS region transcription start site region 5124
Gm49872 17 44366568 to 44367903 1335 - lincRNA gene predicted gene, 49872
Runx2 17 44495987 to 44814797 318810 - protein coding gene runt related transcription factor 2
D17Mit269 17 44545676 to 44545810 134 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-269
Tssr144756 17 44561980 to 44561996 16 + TSS region transcription start site region 144756
Runx2os3 17 44561990 to 44563172 1182 + antisense lncRNA gene runt related transcription factor 2, opposite strand 3
Tssr148162 17 44607500 to 44607520 20 - TSS region transcription start site region 148162
Tssr148163 17 44618575 to 44618579 4 - TSS region transcription start site region 148163
Tssr144757 17 44628189 to 44628193 4 + TSS region transcription start site region 144757
n-R5s27 17 44641025 to 44641143 118 - rRNA gene nuclear encoded rRNA 5S 27
Tssr148164 17 44643577 to 44643579 2 - TSS region transcription start site region 148164
Tssr148165 17 44654425 to 44654465 40 - TSS region transcription start site region 148165
Tssr148166 17 44658533 to 44658559 26 - TSS region transcription start site region 148166
Tssr148167 17 44658584 to 44658590 6 - TSS region transcription start site region 148167
D930007N19Rik 17 44680845 to 44683096 2251 unclassified gene RIKEN cDNA D930007N19 gene
Cfq4 17 44705665 to 49059374 4353709 QTL conditioned fear QTL 4
Tssr5125 17 44709984 to 44710023 39 - TSS region transcription start site region 5125
Runx2os2 17 44710222 to 44713925 3703 + antisense lncRNA gene runt related transcription factor 2, opposite strand 2
Tssr148168 17 44716740 to 44716744 4 - TSS region transcription start site region 148168
Tssr148169 17 44724224 to 44724227 3 - TSS region transcription start site region 148169
Cpgi9178 17 44734085 to 44736924 2839 CpG island CpG island 9178
Tssr144758 17 44734143 to 44734175 32 + TSS region transcription start site region 144758
Tssr148170 17 44735575 to 44735588 13 - TSS region transcription start site region 148170
Tssr148171 17 44735612 to 44735666 54 - TSS region transcription start site region 148171
Tssr144759 17 44735767 to 44735783 16 + TSS region transcription start site region 144759
Runx2os1 17 44735845 to 44737612 1767 + antisense lncRNA gene runt related transcription factor 2, opposite strand 1
Tssr5126 17 44736086 to 44736181 95 - TSS region transcription start site region 5126
Tssr144760 17 44736208 to 44736219 11 + TSS region transcription start site region 144760
Tssr148172 17 44736286 to 44736296 10 - TSS region transcription start site region 148172
Tssr148173 17 44736309 to 44736332 23 - TSS region transcription start site region 148173
Tssr148174 17 44736362 to 44736373 11 - TSS region transcription start site region 148174
Tssr148175 17 44736444 to 44736469 25 - TSS region transcription start site region 148175
Tssr148176 17 44736650 to 44736674 24 - TSS region transcription start site region 148176
Tssr148177 17 44738021 to 44738060 39 - TSS region transcription start site region 148177
D17Mit137 17 44757247 to 44757339 92 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 137
Cpgi9179 17 44776724 to 44777792 1068 CpG island CpG island 9179
Tssr144761 17 44777127 to 44777198 71 + TSS region transcription start site region 144761
Supt3 17 44777171 to 45119294 342123 + protein coding gene suppressor of Ty 3
Tssr144762 17 44777200 to 44777276 76 + TSS region transcription start site region 144762
Tssr144763 17 44777294 to 44777333 39 + TSS region transcription start site region 144763
Tssr148178 17 44814416 to 44814419 3 - TSS region transcription start site region 148178
Tssr148179 17 44814482 to 44814496 14 - TSS region transcription start site region 148179
Tssr148180 17 44814508 to 44814515 7 - TSS region transcription start site region 148180
Tssr148181 17 44814590 to 44814595 5 - TSS region transcription start site region 148181
Tssr148182 17 44814604 to 44814637 33 - TSS region transcription start site region 148182
Tssr148183 17 44814649 to 44814660 11 - TSS region transcription start site region 148183
Tssr144764 17 44839317 to 44839321 4 + TSS region transcription start site region 144764
4930564C03Rik 17 44879770 to 44880295 525 - protein coding gene RIKEN cDNA 4930564C03 gene
Tssr148184 17 44880830 to 44880831 1 - TSS region transcription start site region 148184
Tssr148185 17 44880833 to 44880838 5 - TSS region transcription start site region 148185
Tssr148186 17 44880841 to 44880858 17 - TSS region transcription start site region 148186
Tssr148187 17 44880871 to 44880874 3 - TSS region transcription start site region 148187
Tssr148188 17 44880876 to 44880890 14 - TSS region transcription start site region 148188
Tssr148189 17 45020689 to 45020735 46 - TSS region transcription start site region 148189
Gm35097 17 45147237 to 45151629 4392 + lincRNA gene predicted gene, 35097
Cpgi9180 17 45159238 to 45159539 301 CpG island CpG island 9180
Gm4766 17 45163230 to 45164168 938 - pseudogene predicted pseudogene 4766
Cpgi9181 17 45163531 to 45163988 457 CpG island CpG island 9181
Gm24979 17 45209966 to 45210091 125 + miRNA gene predicted gene, 24979
Cpgi9182 17 45251340 to 45251666 326 CpG island CpG island 9182
Gm41582 17 45252630 to 45263380 10750 - lncRNA gene predicted gene, 41582
Tssr144765 17 45283190 to 45283220 30 + TSS region transcription start site region 144765
Gm35204 17 45298061 to 45299218 1157 + lncRNA gene predicted gene, 35204
Tssr144766 17 45298097 to 45298115 18 + TSS region transcription start site region 144766
Tssr144767 17 45298570 to 45298595 25 + TSS region transcription start site region 144767
Tssr144768 17 45298623 to 45298634 11 + TSS region transcription start site region 144768
D17Mit49 17 45311480 to 45311728 248 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 49
Uvbi2 17 45311480 to 45311728 248 QTL UVB induced immunosuppression 2
D17Dcr8 17 45311512 to 45311720 208 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 8
D17Mit50 17 45359217 to 45359340 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 50
Mnic1 17 45359340 to 4804477 -40554863 QTL macronutrient intake, carbohydrate 1
Tssr144769 17 45367732 to 45367745 13 + TSS region transcription start site region 144769
Cdc5l 17 45391887 to 45433734 41847 - protein coding gene cell division cycle 5-like (S. pombe)
Cpgi9183 17 45432578 to 45434358 1780 CpG island CpG island 9183
Tssr148190 17 45433483 to 45433494 11 - TSS region transcription start site region 148190
Tssr148191 17 45433506 to 45433530 24 - TSS region transcription start site region 148191
Tssr148192 17 45433539 to 45433561 22 - TSS region transcription start site region 148192
Tssr148193 17 45433562 to 45433583 21 - TSS region transcription start site region 148193
Tssr144770 17 45433587 to 45433612 25 + TSS region transcription start site region 144770
Tssr148194 17 45433650 to 45433662 12 - TSS region transcription start site region 148194
Tssr148195 17 45433682 to 45433709 27 - TSS region transcription start site region 148195
Tssr148196 17 45433711 to 45433745 34 - TSS region transcription start site region 148196
Tssr144771 17 45433823 to 45433868 45 + TSS region transcription start site region 144771
B230354K17Rik 17 45433831 to 45442544 8713 + bidirectional promoter lncRNA gene RIKEN cDNA B230354K17 gene
Spats1 17 45445877 to 45475194 29317 - protein coding gene spermatogenesis associated, serine-rich 1
Tssr144772 17 45456117 to 45456121 4 + TSS region transcription start site region 144772
Tssr144773 17 45456926 to 45456941 15 + TSS region transcription start site region 144773
Tssr144774 17 45456956 to 45456981 25 + TSS region transcription start site region 144774
Tssr144775 17 45457012 to 45457021 9 + TSS region transcription start site region 144775
Tssr148197 17 45458872 to 45458881 9 - TSS region transcription start site region 148197
Tssr148198 17 45458943 to 45458953 10 - TSS region transcription start site region 148198
Tssr148199 17 45458979 to 45459008 29 - TSS region transcription start site region 148199
Tssr144776 17 45459248 to 45459268 20 + TSS region transcription start site region 144776
Tssr148200 17 45461617 to 45461631 14 - TSS region transcription start site region 148200
Gm9104 17 45465788 to 45466270 482 + pseudogene predicted gene 9104