Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:43876568-44857903

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rcan2 17 43801351 to 44039516 238165 + protein coding gene regulator of calcineurin 2
Tssr144729 17 43908629 to 43908651 22 + TSS region transcription start site region 144729
Tssr144730 17 43909095 to 43909108 13 + TSS region transcription start site region 144730
Tssr144731 17 43953045 to 43953063 18 + TSS region transcription start site region 144731
Tssr144732 17 43953240 to 43953276 36 + TSS region transcription start site region 144732
Tssr144733 17 43953358 to 43953369 11 + TSS region transcription start site region 144733
Gm24532 17 43961556 to 43961841 285 - unclassified non-coding RNA gene predicted gene, 24532
Tssr144734 17 43985021 to 43985033 12 + TSS region transcription start site region 144734
Gm10498 17 44026251 to 44027398 1147 protein coding gene predicted gene 10498
Tssr144735 17 44026673 to 44026693 20 + TSS region transcription start site region 144735
Tssr144736 17 44038866 to 44038880 14 + TSS region transcription start site region 144736
Tssr144737 17 44038975 to 44038987 12 + TSS region transcription start site region 144737
Gm34857 17 44046517 to 44065109 18592 + lncRNA gene predicted gene, 34857
Cpgi9175 17 44078688 to 44079122 434 CpG island CpG island 9175
Tssr144738 17 44078825 to 44078910 85 + TSS region transcription start site region 144738
Enpp5 17 44078846 to 44086567 7721 + protein coding gene ectonucleotide pyrophosphatase/phosphodiesterase 5
Tssr144739 17 44078912 to 44078950 38 + TSS region transcription start site region 144739
Enpp4 17 44096308 to 44105809 9501 - protein coding gene ectonucleotide pyrophosphatase/phosphodiesterase 4
Cpgi9176 17 44105293 to 44106119 826 CpG island CpG island 9176
Tssr148157 17 44105682 to 44105697 15 - TSS region transcription start site region 148157
Tssr148158 17 44105728 to 44105767 39 - TSS region transcription start site region 148158
Tssr148159 17 44105774 to 44105845 71 - TSS region transcription start site region 148159
Tssr148160 17 44105887 to 44105896 9 - TSS region transcription start site region 148160
Tssr144740 17 44105910 to 44105933 23 + TSS region transcription start site region 144740
Tssr148161 17 44105917 to 44105963 46 - TSS region transcription start site region 148161
Gm34917 17 44105979 to 44124177 18198 + lncRNA gene predicted gene, 34917
Tssr144741 17 44107839 to 44107843 4 + TSS region transcription start site region 144741
Tssr144742 17 44125345 to 44125349 4 + TSS region transcription start site region 144742
Tssr144743 17 44134730 to 44134748 18 + TSS region transcription start site region 144743
Tssr144744 17 44134768 to 44134793 25 + TSS region transcription start site region 144744
Tssr144745 17 44134794 to 44134811 17 + TSS region transcription start site region 144745
Tssr144746 17 44134813 to 44134822 9 + TSS region transcription start site region 144746
Tssr144747 17 44172543 to 44172547 4 + TSS region transcription start site region 144747
Cpgi9177 17 44188171 to 44189143 972 CpG island CpG island 9177
Tssr144748 17 44188564 to 44188594 30 + TSS region transcription start site region 144748
Clic5 17 44188584 to 44280172 91588 + protein coding gene chloride intracellular channel 5
Tssr144749 17 44188603 to 44188618 15 + TSS region transcription start site region 144749
Tssr144750 17 44188625 to 44188632 7 + TSS region transcription start site region 144750
Tssr144751 17 44188653 to 44188664 11 + TSS region transcription start site region 144751
Tssr144752 17 44188665 to 44188676 11 + TSS region transcription start site region 144752
Tssr144753 17 44188689 to 44188702 13 + TSS region transcription start site region 144753
Tssr144754 17 44192719 to 44192722 3 + TSS region transcription start site region 144754
Tssr144755 17 44229777 to 44229781 4 + TSS region transcription start site region 144755
Tssr5123 17 44247487 to 44247490 3 + TSS region transcription start site region 5123
D17Mit136 17 44255717 to 44255861 144 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 136
Tssr5124 17 44279902 to 44279917 15 + TSS region transcription start site region 5124
Gm49872 17 44366568 to 44367903 1335 - lincRNA gene predicted gene, 49872
Runx2 17 44495987 to 44814797 318810 - protein coding gene runt related transcription factor 2
D17Mit269 17 44545676 to 44545810 134 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-269
Tssr144756 17 44561980 to 44561996 16 + TSS region transcription start site region 144756
Runx2os3 17 44561990 to 44563172 1182 + antisense lncRNA gene runt related transcription factor 2, opposite strand 3
Tssr148162 17 44607500 to 44607520 20 - TSS region transcription start site region 148162
Tssr148163 17 44618575 to 44618579 4 - TSS region transcription start site region 148163
Tssr144757 17 44628189 to 44628193 4 + TSS region transcription start site region 144757
n-R5s27 17 44641025 to 44641143 118 - rRNA gene nuclear encoded rRNA 5S 27
Tssr148164 17 44643577 to 44643579 2 - TSS region transcription start site region 148164
Tssr148165 17 44654425 to 44654465 40 - TSS region transcription start site region 148165
Tssr148166 17 44658533 to 44658559 26 - TSS region transcription start site region 148166
Tssr148167 17 44658584 to 44658590 6 - TSS region transcription start site region 148167
D930007N19Rik 17 44680845 to 44683096 2251 unclassified gene RIKEN cDNA D930007N19 gene
Cfq4 17 44705665 to 49059374 4353709 QTL conditioned fear QTL 4
Tssr5125 17 44709984 to 44710023 39 - TSS region transcription start site region 5125
Runx2os2 17 44710222 to 44713925 3703 + antisense lncRNA gene runt related transcription factor 2, opposite strand 2
Tssr148168 17 44716740 to 44716744 4 - TSS region transcription start site region 148168
Tssr148169 17 44724224 to 44724227 3 - TSS region transcription start site region 148169
Cpgi9178 17 44734085 to 44736924 2839 CpG island CpG island 9178
Tssr144758 17 44734143 to 44734175 32 + TSS region transcription start site region 144758
Tssr148170 17 44735575 to 44735588 13 - TSS region transcription start site region 148170
Tssr148171 17 44735612 to 44735666 54 - TSS region transcription start site region 148171
Tssr144759 17 44735767 to 44735783 16 + TSS region transcription start site region 144759
Runx2os1 17 44735845 to 44737612 1767 + antisense lncRNA gene runt related transcription factor 2, opposite strand 1
Tssr5126 17 44736086 to 44736181 95 - TSS region transcription start site region 5126
Tssr144760 17 44736208 to 44736219 11 + TSS region transcription start site region 144760
Tssr148172 17 44736286 to 44736296 10 - TSS region transcription start site region 148172
Tssr148173 17 44736309 to 44736332 23 - TSS region transcription start site region 148173
Tssr148174 17 44736362 to 44736373 11 - TSS region transcription start site region 148174
Tssr148175 17 44736444 to 44736469 25 - TSS region transcription start site region 148175
Tssr148176 17 44736650 to 44736674 24 - TSS region transcription start site region 148176
Tssr148177 17 44738021 to 44738060 39 - TSS region transcription start site region 148177
D17Mit137 17 44757247 to 44757339 92 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 137
Cpgi9179 17 44776724 to 44777792 1068 CpG island CpG island 9179
Tssr144761 17 44777127 to 44777198 71 + TSS region transcription start site region 144761
Supt3 17 44777171 to 45119294 342123 + protein coding gene suppressor of Ty 3
Tssr144762 17 44777200 to 44777276 76 + TSS region transcription start site region 144762
Tssr144763 17 44777294 to 44777333 39 + TSS region transcription start site region 144763
Tssr148178 17 44814416 to 44814419 3 - TSS region transcription start site region 148178
Tssr148179 17 44814482 to 44814496 14 - TSS region transcription start site region 148179
Tssr148180 17 44814508 to 44814515 7 - TSS region transcription start site region 148180
Tssr148181 17 44814590 to 44814595 5 - TSS region transcription start site region 148181
Tssr148182 17 44814604 to 44814637 33 - TSS region transcription start site region 148182
Tssr148183 17 44814649 to 44814660 11 - TSS region transcription start site region 148183
Tssr144764 17 44839317 to 44839321 4 + TSS region transcription start site region 144764