Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:43583825-44573910

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa28 17 25365940 to 43665344 18299404 QTL B.burgdorferi-associated arthritis 28
Bbaa8 17 42740294 to 43665344 925050 QTL B.burgdorferi-associated arthritis 8
Pla2g7 17 43568098 to 43612201 44103 + protein coding gene phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
1700071M16Rik 17 43588340 to 43591509 3169 - antisense lncRNA gene RIKEN cDNA 1700071M16 gene
Tssr144699 17 43588558 to 43588596 38 + TSS region transcription start site region 144699
Tssr144700 17 43588614 to 43588647 33 + TSS region transcription start site region 144700
Tssr144701 17 43588649 to 43588669 20 + TSS region transcription start site region 144701
Tssr148133 17 43591451 to 43591463 12 - TSS region transcription start site region 148133
Tssr148134 17 43591472 to 43591480 8 - TSS region transcription start site region 148134
Tssr148135 17 43591484 to 43591489 5 - TSS region transcription start site region 148135
Tssr148136 17 43591502 to 43591514 12 - TSS region transcription start site region 148136
Tssr148137 17 43592426 to 43592445 19 - TSS region transcription start site region 148137
Tssr144702 17 43592524 to 43592533 9 + TSS region transcription start site region 144702
Tssr144703 17 43594344 to 43594378 34 + TSS region transcription start site region 144703
Tssr144704 17 43594781 to 43594829 48 + TSS region transcription start site region 144704
Tssr144705 17 43594857 to 43594891 34 + TSS region transcription start site region 144705
Tssr144706 17 43600327 to 43600329 2 + TSS region transcription start site region 144706
Tssr144707 17 43602827 to 43602847 20 + TSS region transcription start site region 144707
Tssr144708 17 43604561 to 43604580 19 + TSS region transcription start site region 144708
Tssr144709 17 43604597 to 43604615 18 + TSS region transcription start site region 144709
Tssr144710 17 43607125 to 43607138 13 + TSS region transcription start site region 144710
Tssr144711 17 43607228 to 43607257 29 + TSS region transcription start site region 144711
Tssr144712 17 43607259 to 43607335 76 + TSS region transcription start site region 144712
Tssr148138 17 43607377 to 43607400 23 - TSS region transcription start site region 148138
Tssr144713 17 43611264 to 43611311 47 + TSS region transcription start site region 144713
Tssr144714 17 43611341 to 43611396 55 + TSS region transcription start site region 144714
Tssr144715 17 43611877 to 43611950 73 + TSS region transcription start site region 144715
Tssr148139 17 43612027 to 43612056 29 - TSS region transcription start site region 148139
Tssr148140 17 43612085 to 43612106 21 - TSS region transcription start site region 148140
Tssr148141 17 43612133 to 43612157 24 - TSS region transcription start site region 148141
Tssr148142 17 43612182 to 43612203 21 - TSS region transcription start site region 148142
Tdrd6 17 43615335 to 43630299 14964 - protein coding gene tudor domain containing 6
Tssr148143 17 43624408 to 43624418 10 - TSS region transcription start site region 148143
Tssr148144 17 43628571 to 43628579 8 - TSS region transcription start site region 148144
Tssr148145 17 43628605 to 43628613 8 - TSS region transcription start site region 148145
Cpgi9172 17 43628995 to 43630580 1585 CpG island CpG island 9172
Tssr148146 17 43630280 to 43630289 9 - TSS region transcription start site region 148146
Tssr148147 17 43630290 to 43630304 14 - TSS region transcription start site region 148147
Tssr148148 17 43630310 to 43630313 3 - TSS region transcription start site region 148148
Tssr5122 17 43630628 to 43630651 23 - TSS region transcription start site region 5122
Tssr148149 17 43630686 to 43630697 11 - TSS region transcription start site region 148149
Slc25a27 17 43641891 to 43667214 25323 - protein coding gene solute carrier family 25, member 27
Tssr148150 17 43649687 to 43649695 8 - TSS region transcription start site region 148150
Tssr148151 17 43649697 to 43649719 22 - TSS region transcription start site region 148151
D17Mit215 17 43665243 to 43665344 101 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 215
Cpgi9173 17 43666673 to 43667345 672 CpG island CpG island 9173
Tssr148152 17 43667139 to 43667163 24 - TSS region transcription start site region 148152
Tssr148153 17 43667165 to 43667198 33 - TSS region transcription start site region 148153
Tssr144716 17 43667389 to 43667393 4 + TSS region transcription start site region 144716
Cyp39a1 17 43667425 to 43751431 84006 + protein coding gene cytochrome P450, family 39, subfamily a, polypeptide 1
Tssr144717 17 43667488 to 43667512 24 + TSS region transcription start site region 144717
Tssr144718 17 43667513 to 43667537 24 + TSS region transcription start site region 144718
Gm25783 17 43698363 to 43698552 189 + snRNA gene predicted gene, 25783
Gm41581 17 43721473 to 43746516 25043 - lncRNA gene predicted gene, 41581
Tssr148154 17 43744558 to 43744569 11 - TSS region transcription start site region 148154
Tssr148155 17 43744577 to 43744595 18 - TSS region transcription start site region 148155
Gm34773 17 43787541 to 43800383 12842 - lncRNA gene predicted gene, 34773
Tssr144719 17 43801294 to 43801322 28 + TSS region transcription start site region 144719
Tssr144720 17 43801324 to 43801354 30 + TSS region transcription start site region 144720
Rcan2 17 43801351 to 44039516 238165 + protein coding gene regulator of calcineurin 2
Cpgi9174 17 43801519 to 43802553 1034 CpG island CpG island 9174
Tssr144721 17 43801788 to 43801817 29 + TSS region transcription start site region 144721
Tssr144722 17 43801823 to 43801863 40 + TSS region transcription start site region 144722
Tssr144723 17 43801870 to 43801882 12 + TSS region transcription start site region 144723
Tssr144724 17 43801891 to 43801899 8 + TSS region transcription start site region 144724
Tssr144725 17 43801913 to 43801924 11 + TSS region transcription start site region 144725
Tssr144726 17 43801927 to 43802011 84 + TSS region transcription start site region 144726
Tssr144727 17 43804021 to 43804041 20 + TSS region transcription start site region 144727
Tssr144728 17 43804044 to 43804088 44 + TSS region transcription start site region 144728
Tssr148156 17 43816439 to 43816460 21 - TSS region transcription start site region 148156
Tssr144729 17 43908629 to 43908651 22 + TSS region transcription start site region 144729
Tssr144730 17 43909095 to 43909108 13 + TSS region transcription start site region 144730
Tssr144731 17 43953045 to 43953063 18 + TSS region transcription start site region 144731
Tssr144732 17 43953240 to 43953276 36 + TSS region transcription start site region 144732
Tssr144733 17 43953358 to 43953369 11 + TSS region transcription start site region 144733
Gm24532 17 43961556 to 43961841 285 - unclassified non-coding RNA gene predicted gene, 24532
Tssr144734 17 43985021 to 43985033 12 + TSS region transcription start site region 144734
Gm10498 17 44026251 to 44027398 1147 protein coding gene predicted gene 10498
Tssr144735 17 44026673 to 44026693 20 + TSS region transcription start site region 144735
Tssr144736 17 44038866 to 44038880 14 + TSS region transcription start site region 144736
Tssr144737 17 44038975 to 44038987 12 + TSS region transcription start site region 144737
Gm34857 17 44046517 to 44065109 18592 + lncRNA gene predicted gene, 34857
Cpgi9175 17 44078688 to 44079122 434 CpG island CpG island 9175
Tssr144738 17 44078825 to 44078910 85 + TSS region transcription start site region 144738
Enpp5 17 44078846 to 44086567 7721 + protein coding gene ectonucleotide pyrophosphatase/phosphodiesterase 5
Tssr144739 17 44078912 to 44078950 38 + TSS region transcription start site region 144739
Enpp4 17 44096308 to 44105809 9501 - protein coding gene ectonucleotide pyrophosphatase/phosphodiesterase 4
Cpgi9176 17 44105293 to 44106119 826 CpG island CpG island 9176
Tssr148157 17 44105682 to 44105697 15 - TSS region transcription start site region 148157
Tssr148158 17 44105728 to 44105767 39 - TSS region transcription start site region 148158
Tssr148159 17 44105774 to 44105845 71 - TSS region transcription start site region 148159
Tssr148160 17 44105887 to 44105896 9 - TSS region transcription start site region 148160
Tssr144740 17 44105910 to 44105933 23 + TSS region transcription start site region 144740
Tssr148161 17 44105917 to 44105963 46 - TSS region transcription start site region 148161
Gm34917 17 44105979 to 44124177 18198 + lncRNA gene predicted gene, 34917
Tssr144741 17 44107839 to 44107843 4 + TSS region transcription start site region 144741
Tssr144742 17 44125345 to 44125349 4 + TSS region transcription start site region 144742
Tssr144743 17 44134730 to 44134748 18 + TSS region transcription start site region 144743
Tssr144744 17 44134768 to 44134793 25 + TSS region transcription start site region 144744
Tssr144745 17 44134794 to 44134811 17 + TSS region transcription start site region 144745
Tssr144746 17 44134813 to 44134822 9 + TSS region transcription start site region 144746
Tssr144747 17 44172543 to 44172547 4 + TSS region transcription start site region 144747
Cpgi9177 17 44188171 to 44189143 972 CpG island CpG island 9177
Tssr144748 17 44188564 to 44188594 30 + TSS region transcription start site region 144748
Clic5 17 44188584 to 44280172 91588 + protein coding gene chloride intracellular channel 5
Tssr144749 17 44188603 to 44188618 15 + TSS region transcription start site region 144749
Tssr144750 17 44188625 to 44188632 7 + TSS region transcription start site region 144750
Tssr144751 17 44188653 to 44188664 11 + TSS region transcription start site region 144751
Tssr144752 17 44188665 to 44188676 11 + TSS region transcription start site region 144752
Tssr144753 17 44188689 to 44188702 13 + TSS region transcription start site region 144753
Tssr144754 17 44192719 to 44192722 3 + TSS region transcription start site region 144754
Tssr144755 17 44229777 to 44229781 4 + TSS region transcription start site region 144755
Tssr5123 17 44247487 to 44247490 3 + TSS region transcription start site region 5123
D17Mit136 17 44255717 to 44255861 144 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 136
Tssr5124 17 44279902 to 44279917 15 + TSS region transcription start site region 5124
Gm49872 17 44366568 to 44367903 1335 - lincRNA gene predicted gene, 49872
Runx2 17 44495987 to 44814797 318810 - protein coding gene runt related transcription factor 2
D17Mit269 17 44545676 to 44545810 134 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-269
Tssr144756 17 44561980 to 44561996 16 + TSS region transcription start site region 144756
Runx2os3 17 44561990 to 44563172 1182 + antisense lncRNA gene runt related transcription factor 2, opposite strand 3