Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:42347989-43828002

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa28 17 25365940 to 43665344 18299404 QTL B.burgdorferi-associated arthritis 28
Tir9 17 27659145 to 43574223 15915078 QTL trypanosome infection response 9
Ptchd4 17 42315947 to 42505077 189130 + protein coding gene patched domain containing 4
Tssr148093 17 42372820 to 42372822 2 - TSS region transcription start site region 148093
Tssr144651 17 42380860 to 42380871 11 + TSS region transcription start site region 144651
Tssr144652 17 42435804 to 42435808 4 + TSS region transcription start site region 144652
Tssr144653 17 42501491 to 42501496 5 + TSS region transcription start site region 144653
Tssr144654 17 42508426 to 42508430 4 + TSS region transcription start site region 144654
Opn5 17 42556783 to 42611395 54612 - protein coding gene opsin 5
Tssr144655 17 42645313 to 42645320 7 + TSS region transcription start site region 144655
Adgrf4 17 42656891 to 42692284 35393 - protein coding gene adhesion G protein-coupled receptor F4
Tssr148094 17 42692211 to 42692238 27 - TSS region transcription start site region 148094
Tssr148095 17 42692244 to 42692289 45 - TSS region transcription start site region 148095
Tssr148096 17 42692302 to 42692322 20 - TSS region transcription start site region 148096
Adgrf2 17 42708936 to 42742179 33243 - protein coding gene adhesion G protein-coupled receptor F2
Gm5978 17 42727173 to 42728036 863 + pseudogene predicted gene 5978
Bbaa8 17 42740294 to 43665344 925050 QTL B.burgdorferi-associated arthritis 8
Bbaa29 17 42740294 to 42740461 167 QTL B.burgdorferi-associated arthritis 29
D17Mit176 17 42740294 to 42740461 167 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 176
Hbnr7 17 42740294 to 51432094 8691800 QTL Heligmosomoides bakeri nematode resistance 7
Tssr148097 17 42742024 to 42742027 3 - TSS region transcription start site region 148097
Tssr148098 17 42742052 to 42742085 33 - TSS region transcription start site region 148098
Tssr148099 17 42742125 to 42742137 12 - TSS region transcription start site region 148099
Tssr148100 17 42742145 to 42742162 17 - TSS region transcription start site region 148100
Tssr148101 17 42742167 to 42742189 22 - TSS region transcription start site region 148101
Cd2ap 17 42792951 to 42876665 83714 - protein coding gene CD2-associated protein
Tssr148102 17 42795926 to 42795962 36 - TSS region transcription start site region 148102
Tssr148103 17 42823419 to 42823429 10 - TSS region transcription start site region 148103
Cpgi9164 17 42875793 to 42877027 1234 CpG island CpG island 9164
Tssr148104 17 42876409 to 42876416 7 - TSS region transcription start site region 148104
Tssr148105 17 42876417 to 42876431 14 - TSS region transcription start site region 148105
Tssr148106 17 42876442 to 42876455 13 - TSS region transcription start site region 148106
Tssr148107 17 42876544 to 42876549 5 - TSS region transcription start site region 148107
Tssr148108 17 42876551 to 42876560 9 - TSS region transcription start site region 148108
Tssr148109 17 42876616 to 42876676 60 - TSS region transcription start site region 148109
Tssr148110 17 42876678 to 42876692 14 - TSS region transcription start site region 148110
Tssr144656 17 42876949 to 42876953 4 + TSS region transcription start site region 144656
Cpgi9165 17 42975655 to 42975819 164 CpG island CpG island 9165
Cpgi9166 17 43016394 to 43017934 1540 CpG island CpG island 9166
Tssr144657 17 43016509 to 43016518 9 + TSS region transcription start site region 144657
Tssr144658 17 43016522 to 43016535 13 + TSS region transcription start site region 144658
Tssr144659 17 43016536 to 43016591 55 + TSS region transcription start site region 144659
Tnfrsf21 17 43016555 to 43089188 72633 + protein coding gene tumor necrosis factor receptor superfamily, member 21
Tssr148111 17 43017547 to 43017558 11 - TSS region transcription start site region 148111
Cpgi9167 17 43026192 to 43026381 189 CpG island CpG island 9167
Tssr144660 17 43027122 to 43027123 1 + TSS region transcription start site region 144660
Tssr144661 17 43036348 to 43036382 34 + TSS region transcription start site region 144661
Tssr144662 17 43037684 to 43037696 12 + TSS region transcription start site region 144662
Tssr144663 17 43045917 to 43045933 16 + TSS region transcription start site region 144663
Tssr144664 17 43077311 to 43077318 7 + TSS region transcription start site region 144664
Tssr144665 17 43087762 to 43087773 11 + TSS region transcription start site region 144665
Tssr144666 17 43087898 to 43087912 14 + TSS region transcription start site region 144666
Tssr144667 17 43087989 to 43088002 13 + TSS region transcription start site region 144667
Tssr144668 17 43088008 to 43088025 17 + TSS region transcription start site region 144668
Gm34627 17 43109663 to 43117134 7471 - lncRNA gene predicted gene, 34627
Tssr148112 17 43113194 to 43113203 9 - TSS region transcription start site region 148112
A930008B05Rik 17 43132037 to 43133149 1112 unclassified gene RIKEN cDNA A930008B05 gene
Tssr144669 17 43138596 to 43138601 5 + TSS region transcription start site region 144669
E130008D07Rik 17 43146041 to 43158291 12250 - lincRNA gene RIKEN cDNA E130008D07 gene
Tssr148113 17 43157871 to 43157903 32 - TSS region transcription start site region 148113
Tssr148114 17 43158279 to 43158306 27 - TSS region transcription start site region 148114
Gm4635 17 43185874 to 43190698 4824 unclassified gene predicted gene 4635
Cpgi9168 17 43265322 to 43265640 318 CpG island CpG island 9168
Adgrf1 17 43270329 to 43324737 54408 + protein coding gene adhesion G protein-coupled receptor F1
Tssr144670 17 43270340 to 43270366 26 + TSS region transcription start site region 144670
Tssr144671 17 43360020 to 43360030 10 + TSS region transcription start site region 144671
Tssr144672 17 43360322 to 43360336 14 + TSS region transcription start site region 144672
Tssr144673 17 43360363 to 43360382 19 + TSS region transcription start site region 144673
Tssr144674 17 43360386 to 43360409 23 + TSS region transcription start site region 144674
Tssr144675 17 43360423 to 43360456 33 + TSS region transcription start site region 144675
Adgrf5 17 43360451 to 43459557 99106 + protein coding gene adhesion G protein-coupled receptor F5
Tssr148115 17 43361351 to 43361356 5 - TSS region transcription start site region 148115
Tssr144676 17 43389436 to 43389497 61 + TSS region transcription start site region 144676
Tssr144677 17 43389501 to 43389513 12 + TSS region transcription start site region 144677
Tssr144678 17 43389526 to 43389539 13 + TSS region transcription start site region 144678
Tssr144679 17 43389542 to 43389562 20 + TSS region transcription start site region 144679
Tssr144680 17 43389579 to 43389594 15 + TSS region transcription start site region 144680
Gm25135 17 43454255 to 43454397 142 + snRNA gene predicted gene, 25135
Cpgi9169 17 43454964 to 43455169 205 CpG island CpG island 9169
Tssr144681 17 43455437 to 43455449 12 + TSS region transcription start site region 144681
Tssr144682 17 43455631 to 43455656 25 + TSS region transcription start site region 144682
Tssr148116 17 43457017 to 43457022 5 - TSS region transcription start site region 148116
Mep1a 17 43474324 to 43502812 28488 - protein coding gene meprin 1 alpha
Cpgi9170 17 43474969 to 43475161 192 CpG island CpG island 9170
Tssr144683 17 43477081 to 43477089 8 + TSS region transcription start site region 144683
Tssr148117 17 43477743 to 43477754 11 - TSS region transcription start site region 148117
Tssr148118 17 43477757 to 43477776 19 - TSS region transcription start site region 148118
Tssr148119 17 43477782 to 43477796 14 - TSS region transcription start site region 148119
Tssr148120 17 43490341 to 43490347 6 - TSS region transcription start site region 148120
Tssr148121 17 43502717 to 43502739 22 - TSS region transcription start site region 148121
Tssr148122 17 43502795 to 43502806 11 - TSS region transcription start site region 148122
Tssr148123 17 43504013 to 43504021 8 - TSS region transcription start site region 148123
Tssr148124 17 43504267 to 43504277 10 - TSS region transcription start site region 148124
Tssr148125 17 43504278 to 43504304 26 - TSS region transcription start site region 148125
Tssr148126 17 43504328 to 43504331 3 - TSS region transcription start site region 148126
Ankrd66 17 43534188 to 43543639 9451 - protein coding gene ankyrin repeat domain 66
Tssr144684 17 43535179 to 43535228 49 + TSS region transcription start site region 144684
Tssr148127 17 43538958 to 43538967 9 - TSS region transcription start site region 148127
Tssr148128 17 43551263 to 43551294 31 - TSS region transcription start site region 148128
Tssr148129 17 43557936 to 43557947 11 - TSS region transcription start site region 148129
Tssr144685 17 43567987 to 43568005 18 + TSS region transcription start site region 144685
Tssr144686 17 43568096 to 43568137 41 + TSS region transcription start site region 144686
Pla2g7 17 43568098 to 43612201 44103 + protein coding gene phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
Tssr144687 17 43568152 to 43568157 5 + TSS region transcription start site region 144687
Tssr144688 17 43568290 to 43568303 13 + TSS region transcription start site region 144688
Cpgi9171 17 43568323 to 43568491 168 CpG island CpG island 9171
Tssr144689 17 43568447 to 43568458 11 + TSS region transcription start site region 144689
Tssr144690 17 43568482 to 43568493 11 + TSS region transcription start site region 144690
Tssr144691 17 43568502 to 43568541 39 + TSS region transcription start site region 144691
Tssr148130 17 43568504 to 43568529 25 - TSS region transcription start site region 148130
Tssr144692 17 43568558 to 43568592 34 + TSS region transcription start site region 144692
Tssr144693 17 43568606 to 43568639 33 + TSS region transcription start site region 144693
Tssr144694 17 43568641 to 43568676 35 + TSS region transcription start site region 144694
Tssr144695 17 43568689 to 43568704 15 + TSS region transcription start site region 144695
Tssr144696 17 43568706 to 43568743 37 + TSS region transcription start site region 144696
Tssr144697 17 43569396 to 43569434 38 + TSS region transcription start site region 144697
Tssr148131 17 43569948 to 43569956 8 - TSS region transcription start site region 148131
Tssr148132 17 43569971 to 43569983 12 - TSS region transcription start site region 148132
D17Mit168 17 43574081 to 43574223 142 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 168
Loco2 17 43574081 to 43574223 142 QTL locomotor activity 2
Tssr144698 17 43576760 to 43576784 24 + TSS region transcription start site region 144698
1700071M16Rik 17 43588340 to 43591509 3169 - antisense lncRNA gene RIKEN cDNA 1700071M16 gene
Tssr144699 17 43588558 to 43588596 38 + TSS region transcription start site region 144699
Tssr144700 17 43588614 to 43588647 33 + TSS region transcription start site region 144700
Tssr144701 17 43588649 to 43588669 20 + TSS region transcription start site region 144701
Tssr148133 17 43591451 to 43591463 12 - TSS region transcription start site region 148133
Tssr148134 17 43591472 to 43591480 8 - TSS region transcription start site region 148134
Tssr148135 17 43591484 to 43591489 5 - TSS region transcription start site region 148135
Tssr148136 17 43591502 to 43591514 12 - TSS region transcription start site region 148136
Tssr148137 17 43592426 to 43592445 19 - TSS region transcription start site region 148137
Tssr144702 17 43592524 to 43592533 9 + TSS region transcription start site region 144702
Tssr144703 17 43594344 to 43594378 34 + TSS region transcription start site region 144703
Tssr144704 17 43594781 to 43594829 48 + TSS region transcription start site region 144704
Tssr144705 17 43594857 to 43594891 34 + TSS region transcription start site region 144705
Tssr144706 17 43600327 to 43600329 2 + TSS region transcription start site region 144706
Tssr144707 17 43602827 to 43602847 20 + TSS region transcription start site region 144707
Tssr144708 17 43604561 to 43604580 19 + TSS region transcription start site region 144708
Tssr144709 17 43604597 to 43604615 18 + TSS region transcription start site region 144709
Tssr144710 17 43607125 to 43607138 13 + TSS region transcription start site region 144710
Tssr144711 17 43607228 to 43607257 29 + TSS region transcription start site region 144711
Tssr144712 17 43607259 to 43607335 76 + TSS region transcription start site region 144712
Tssr148138 17 43607377 to 43607400 23 - TSS region transcription start site region 148138
Tssr144713 17 43611264 to 43611311 47 + TSS region transcription start site region 144713
Tssr144714 17 43611341 to 43611396 55 + TSS region transcription start site region 144714
Tssr144715 17 43611877 to 43611950 73 + TSS region transcription start site region 144715
Tssr148139 17 43612027 to 43612056 29 - TSS region transcription start site region 148139
Tssr148140 17 43612085 to 43612106 21 - TSS region transcription start site region 148140
Tssr148141 17 43612133 to 43612157 24 - TSS region transcription start site region 148141
Tssr148142 17 43612182 to 43612203 21 - TSS region transcription start site region 148142
Tdrd6 17 43615335 to 43630299 14964 - protein coding gene tudor domain containing 6
Tssr148143 17 43624408 to 43624418 10 - TSS region transcription start site region 148143
Tssr148144 17 43628571 to 43628579 8 - TSS region transcription start site region 148144
Tssr148145 17 43628605 to 43628613 8 - TSS region transcription start site region 148145
Cpgi9172 17 43628995 to 43630580 1585 CpG island CpG island 9172
Tssr148146 17 43630280 to 43630289 9 - TSS region transcription start site region 148146
Tssr148147 17 43630290 to 43630304 14 - TSS region transcription start site region 148147
Tssr148148 17 43630310 to 43630313 3 - TSS region transcription start site region 148148
Tssr5122 17 43630628 to 43630651 23 - TSS region transcription start site region 5122
Tssr148149 17 43630686 to 43630697 11 - TSS region transcription start site region 148149
Slc25a27 17 43641891 to 43667214 25323 - protein coding gene solute carrier family 25, member 27
Tssr148150 17 43649687 to 43649695 8 - TSS region transcription start site region 148150
Tssr148151 17 43649697 to 43649719 22 - TSS region transcription start site region 148151
D17Mit215 17 43665243 to 43665344 101 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 215
Cpgi9173 17 43666673 to 43667345 672 CpG island CpG island 9173
Tssr148152 17 43667139 to 43667163 24 - TSS region transcription start site region 148152
Tssr148153 17 43667165 to 43667198 33 - TSS region transcription start site region 148153
Tssr144716 17 43667389 to 43667393 4 + TSS region transcription start site region 144716
Cyp39a1 17 43667425 to 43751431 84006 + protein coding gene cytochrome P450, family 39, subfamily a, polypeptide 1
Tssr144717 17 43667488 to 43667512 24 + TSS region transcription start site region 144717
Tssr144718 17 43667513 to 43667537 24 + TSS region transcription start site region 144718
Gm25783 17 43698363 to 43698552 189 + snRNA gene predicted gene, 25783
Gm41581 17 43721473 to 43746516 25043 - lncRNA gene predicted gene, 41581
Tssr148154 17 43744558 to 43744569 11 - TSS region transcription start site region 148154
Tssr148155 17 43744577 to 43744595 18 - TSS region transcription start site region 148155
Gm34773 17 43787541 to 43800383 12842 - lncRNA gene predicted gene, 34773
Tssr144719 17 43801294 to 43801322 28 + TSS region transcription start site region 144719
Tssr144720 17 43801324 to 43801354 30 + TSS region transcription start site region 144720
Rcan2 17 43801351 to 44039516 238165 + protein coding gene regulator of calcineurin 2
Cpgi9174 17 43801519 to 43802553 1034 CpG island CpG island 9174
Tssr144721 17 43801788 to 43801817 29 + TSS region transcription start site region 144721
Tssr144722 17 43801823 to 43801863 40 + TSS region transcription start site region 144722
Tssr144723 17 43801870 to 43801882 12 + TSS region transcription start site region 144723
Tssr144724 17 43801891 to 43801899 8 + TSS region transcription start site region 144724
Tssr144725 17 43801913 to 43801924 11 + TSS region transcription start site region 144725
Tssr144726 17 43801927 to 43802011 84 + TSS region transcription start site region 144726
Tssr144727 17 43804021 to 43804041 20 + TSS region transcription start site region 144727
Tssr144728 17 43804044 to 43804088 44 + TSS region transcription start site region 144728
Tssr148156 17 43816439 to 43816460 21 - TSS region transcription start site region 148156