Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:42203426-42813430

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi9163 17 42315738 to 42316984 1246 CpG island CpG island 9163
Ptchd4 17 42315947 to 42505077 189130 + protein coding gene patched domain containing 4
Tssr144650 17 42316663 to 42316683 20 + TSS region transcription start site region 144650
B930007P11Rik 17 42340551 to 42343195 2644 unclassified gene RIKEN cDNA B930007P11 gene
Tssr148093 17 42372820 to 42372822 2 - TSS region transcription start site region 148093
Tssr144651 17 42380860 to 42380871 11 + TSS region transcription start site region 144651
Tssr144652 17 42435804 to 42435808 4 + TSS region transcription start site region 144652
Tssr144653 17 42501491 to 42501496 5 + TSS region transcription start site region 144653
Tssr144654 17 42508426 to 42508430 4 + TSS region transcription start site region 144654
Opn5 17 42556783 to 42611395 54612 - protein coding gene opsin 5
Tssr144655 17 42645313 to 42645320 7 + TSS region transcription start site region 144655
Adgrf4 17 42656891 to 42692284 35393 - protein coding gene adhesion G protein-coupled receptor F4
Tssr148094 17 42692211 to 42692238 27 - TSS region transcription start site region 148094
Tssr148095 17 42692244 to 42692289 45 - TSS region transcription start site region 148095
Tssr148096 17 42692302 to 42692322 20 - TSS region transcription start site region 148096
Adgrf2 17 42708936 to 42742179 33243 - protein coding gene adhesion G protein-coupled receptor F2
Gm5978 17 42727173 to 42728036 863 + pseudogene predicted gene 5978
D17Mit176 17 42740294 to 42740461 167 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 176
Bbaa8 17 42740294 to 43665344 925050 QTL B.burgdorferi-associated arthritis 8
Bbaa29 17 42740294 to 42740461 167 QTL B.burgdorferi-associated arthritis 29
Hbnr7 17 42740294 to 51432094 8691800 QTL Heligmosomoides bakeri nematode resistance 7
Tssr148097 17 42742024 to 42742027 3 - TSS region transcription start site region 148097
Tssr148098 17 42742052 to 42742085 33 - TSS region transcription start site region 148098
Tssr148099 17 42742125 to 42742137 12 - TSS region transcription start site region 148099
Tssr148100 17 42742145 to 42742162 17 - TSS region transcription start site region 148100
Tssr148101 17 42742167 to 42742189 22 - TSS region transcription start site region 148101
Cd2ap 17 42792951 to 42876665 83714 - protein coding gene CD2-associated protein
Tssr148102 17 42795926 to 42795962 36 - TSS region transcription start site region 148102