Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:40702393-42623688

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eye2 17 26286363 to 40794146 14507783 QTL eye weight 2
D17Mit104 17 40724449 to 40724558 109 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 104
Tssr144642 17 40727104 to 40727110 6 + TSS region transcription start site region 144642
Esp1 17 40727120 to 40731782 4662 + protein coding gene exocrine gland secreted peptide 1
Crisp2 17 40764734 to 40794146 29412 - protein coding gene cysteine-rich secretory protein 2
Tssr148086 17 40792675 to 40792681 6 - TSS region transcription start site region 148086
Tssr148087 17 40794063 to 40794091 28 - TSS region transcription start site region 148087
Tssr144643 17 40811089 to 40811133 44 + TSS region transcription start site region 144643
Rhag 17 40811126 to 40840754 29628 + protein coding gene Rhesus blood group-associated A glycoprotein
Tssr144644 17 40811139 to 40811174 35 + TSS region transcription start site region 144644
Tssr144645 17 40811183 to 40811188 5 + TSS region transcription start site region 144645
Tssr144646 17 40816706 to 40816708 2 + TSS region transcription start site region 144646
Gm20574 17 40854036 to 40868141 14105 + pseudogene predicted gene, 20574
9130008F23Rik 17 40875482 to 40880558 5076 - protein coding gene RIKEN cDNA 9130008F23 gene
Cpgi9160 17 40879910 to 40880545 635 CpG island CpG island 9160
Tssr148088 17 40880022 to 40880027 5 - TSS region transcription start site region 148088
Tssr148089 17 40880344 to 40880358 14 - TSS region transcription start site region 148089
Tssr148090 17 40880525 to 40880579 54 - TSS region transcription start site region 148090
Glyatl3 17 40904618 to 40914350 9732 - protein coding gene glycine-N-acyltransferase-like 3
D17Mit272 17 40911934 to 40912046 112 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-272
Gm23078 17 40917540 to 40917687 147 - snRNA gene predicted gene, 23078
Cenpq 17 40923055 to 40934551 11496 - protein coding gene centromere protein Q
Cpgi9161 17 40934404 to 40935160 756 CpG island CpG island 9161
Tssr148091 17 40934449 to 40934493 44 - TSS region transcription start site region 148091
Tssr148092 17 40934497 to 40934609 112 - TSS region transcription start site region 148092
Tssr144647 17 40934676 to 40934751 75 + TSS region transcription start site region 144647
Mmut 17 40934685 to 40961988 27303 + protein coding gene methylmalonyl-Coenzyme A mutase
Tssr144648 17 40937113 to 40937123 10 + TSS region transcription start site region 144648
D17Mit126 17 41001605 to 41001741 136 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 126
Gm49854 17 41006048 to 41006306 258 - pseudogene predicted gene, 49854
Gm49855 17 41059652 to 41060057 405 - pseudogene predicted gene, 49855
Gm49857 17 41071123 to 41140201 69078 + lincRNA gene predicted gene, 49857
Ldha-ps3 17 41101038 to 41102228 1190 + pseudogene lactate dehydrogenase A, pseudogene 3
D17Ertd191e 17 41139454 to 41139654 200 DNA segment DNA segment, Chr 17, ERATO Doi 191, expressed
D17Mit105 17 41301859 to 41301973 114 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 105
Eae5 17 41301859 to 41301973 114 QTL experimental allergic encephalomyelitis susceptibility 5
Gm6771 17 41345997 to 41346997 1000 + pseudogene predicted gene 6771
Gm49858 17 41662393 to 41663688 1295 - pseudogene predicted gene, 49858
Tssr144649 17 41752548 to 41752556 8 + TSS region transcription start site region 144649
D17Mit263 17 41757485 to 41757587 102 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 263
D17Mit124 17 41798223 to 41798371 148 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 124
Cpgi9162 17 41958591 to 41958822 231 CpG island CpG island 9162
Gm19847 17 42010656 to 42010873 217 - pseudogene predicted gene, 19847
Cpgi9163 17 42315738 to 42316984 1246 CpG island CpG island 9163
Ptchd4 17 42315947 to 42505077 189130 + protein coding gene patched domain containing 4
Tssr144650 17 42316663 to 42316683 20 + TSS region transcription start site region 144650
B930007P11Rik 17 42340551 to 42343195 2644 unclassified gene RIKEN cDNA B930007P11 gene
Tssr148093 17 42372820 to 42372822 2 - TSS region transcription start site region 148093
Tssr144651 17 42380860 to 42380871 11 + TSS region transcription start site region 144651
Tssr144652 17 42435804 to 42435808 4 + TSS region transcription start site region 144652
Tssr144653 17 42501491 to 42501496 5 + TSS region transcription start site region 144653
Tssr144654 17 42508426 to 42508430 4 + TSS region transcription start site region 144654
Opn5 17 42556783 to 42611395 54612 - protein coding gene opsin 5