Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:40372548-43132556

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126 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eye2 17 26286363 to 40794146 14507783 QTL eye weight 2
Gm49840 17 40418667 to 40418825 158 + pseudogene predicted gene, 49840
Gm49841 17 40433866 to 40434787 921 + pseudogene predicted gene, 49841
Tssr5121 17 40442996 to 40442998 2 + TSS region transcription start site region 5121
Gm49843 17 40449276 to 40449348 72 + pseudogene predicted gene, 49843
Gm45926 17 40451287 to 40451656 369 - pseudogene predicted gene, 45926
Gm34266 17 40453694 to 40454366 672 + pseudogene predicted gene, 34266
C330004N01Rik 17 40455942 to 40495547 39605 lncRNA gene RIKEN cDNA C330004N01 gene
Gm49844 17 40462096 to 40470817 8721 + pseudogene predicted gene, 49844
Gm49845 17 40487473 to 40489700 2227 + pseudogene predicted gene, 49845
Gm49846 17 40499770 to 40516810 17040 + pseudogene predicted gene, 49846
Tssr144637 17 40520019 to 40520028 9 + TSS region transcription start site region 144637
Esp8 17 40520022 to 40530421 10399 + protein coding gene exocrine gland secreted peptide 8
Tssr144638 17 40520030 to 40520044 14 + TSS region transcription start site region 144638
Gm49847 17 40520157 to 40525059 4902 - unclassified gene predicted gene, 49847
Gm29748 17 40552598 to 40552855 257 + pseudogene predicted gene, 29748
Gm46573 17 40554729 to 40557393 2664 + pseudogene predicted gene, 46573
Tssr144639 17 40561480 to 40561487 7 + TSS region transcription start site region 144639
Tssr144640 17 40561498 to 40561512 14 + TSS region transcription start site region 144640
Gm44501 17 40561507 to 40579549 18042 + protein coding gene predicted readthrough transcript, 44501
Esp6 17 40561507 to 40565627 4120 + protein coding gene exocrine gland secreted peptide 6
Esp5 17 40576593 to 40579049 2456 + protein coding gene exocrine gland secreted peptide 5
Tssr144641 17 40580440 to 40580446 6 + TSS region transcription start site region 144641
Esp4 17 40598594 to 40602618 4024 + protein coding gene exocrine gland secreted peptide 4
Esp3 17 40632075 to 40637060 4985 + protein coding gene exocrine gland secreted peptide 3
Gm49850 17 40698070 to 40700207 2137 + pseudogene predicted gene, 49850
D17Mit104 17 40724449 to 40724558 109 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 104
Tssr144642 17 40727104 to 40727110 6 + TSS region transcription start site region 144642
Esp1 17 40727120 to 40731782 4662 + protein coding gene exocrine gland secreted peptide 1
Crisp2 17 40764734 to 40794146 29412 - protein coding gene cysteine-rich secretory protein 2
Tssr148086 17 40792675 to 40792681 6 - TSS region transcription start site region 148086
Tssr148087 17 40794063 to 40794091 28 - TSS region transcription start site region 148087
Tssr144643 17 40811089 to 40811133 44 + TSS region transcription start site region 144643
Rhag 17 40811126 to 40840754 29628 + protein coding gene Rhesus blood group-associated A glycoprotein
Tssr144644 17 40811139 to 40811174 35 + TSS region transcription start site region 144644
Tssr144645 17 40811183 to 40811188 5 + TSS region transcription start site region 144645
Tssr144646 17 40816706 to 40816708 2 + TSS region transcription start site region 144646
Gm20574 17 40854036 to 40868141 14105 + pseudogene predicted gene, 20574
9130008F23Rik 17 40875482 to 40880558 5076 - protein coding gene RIKEN cDNA 9130008F23 gene
Cpgi9160 17 40879910 to 40880545 635 CpG island CpG island 9160
Tssr148088 17 40880022 to 40880027 5 - TSS region transcription start site region 148088
Tssr148089 17 40880344 to 40880358 14 - TSS region transcription start site region 148089
Tssr148090 17 40880525 to 40880579 54 - TSS region transcription start site region 148090
Glyatl3 17 40904618 to 40914350 9732 - protein coding gene glycine-N-acyltransferase-like 3
D17Mit272 17 40911934 to 40912046 112 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-272
Gm23078 17 40917540 to 40917687 147 - snRNA gene predicted gene, 23078
Cenpq 17 40923055 to 40934551 11496 - protein coding gene centromere protein Q
Cpgi9161 17 40934404 to 40935160 756 CpG island CpG island 9161
Tssr148091 17 40934449 to 40934493 44 - TSS region transcription start site region 148091
Tssr148092 17 40934497 to 40934609 112 - TSS region transcription start site region 148092
Tssr144647 17 40934676 to 40934751 75 + TSS region transcription start site region 144647
Mmut 17 40934685 to 40961988 27303 + protein coding gene methylmalonyl-Coenzyme A mutase
Tssr144648 17 40937113 to 40937123 10 + TSS region transcription start site region 144648
D17Mit126 17 41001605 to 41001741 136 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 126
Gm49854 17 41006048 to 41006306 258 - pseudogene predicted gene, 49854
Gm49855 17 41059652 to 41060057 405 - pseudogene predicted gene, 49855
Gm49857 17 41071123 to 41140201 69078 + lincRNA gene predicted gene, 49857
Ldha-ps3 17 41101038 to 41102228 1190 + pseudogene lactate dehydrogenase A, pseudogene 3
D17Ertd191e 17 41139454 to 41139654 200 DNA segment DNA segment, Chr 17, ERATO Doi 191, expressed
D17Mit105 17 41301859 to 41301973 114 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 105
Eae5 17 41301859 to 41301973 114 QTL experimental allergic encephalomyelitis susceptibility 5
Gm6771 17 41345997 to 41346997 1000 + pseudogene predicted gene 6771
Gm49858 17 41662393 to 41663688 1295 - pseudogene predicted gene, 49858
Tssr144649 17 41752548 to 41752556 8 + TSS region transcription start site region 144649
D17Mit263 17 41757485 to 41757587 102 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 263
D17Mit124 17 41798223 to 41798371 148 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 124
Cpgi9162 17 41958591 to 41958822 231 CpG island CpG island 9162
Gm19847 17 42010656 to 42010873 217 - pseudogene predicted gene, 19847
Cpgi9163 17 42315738 to 42316984 1246 CpG island CpG island 9163
Ptchd4 17 42315947 to 42505077 189130 + protein coding gene patched domain containing 4
Tssr144650 17 42316663 to 42316683 20 + TSS region transcription start site region 144650
B930007P11Rik 17 42340551 to 42343195 2644 unclassified gene RIKEN cDNA B930007P11 gene
Tssr148093 17 42372820 to 42372822 2 - TSS region transcription start site region 148093
Tssr144651 17 42380860 to 42380871 11 + TSS region transcription start site region 144651
Tssr144652 17 42435804 to 42435808 4 + TSS region transcription start site region 144652
Tssr144653 17 42501491 to 42501496 5 + TSS region transcription start site region 144653
Tssr144654 17 42508426 to 42508430 4 + TSS region transcription start site region 144654
Opn5 17 42556783 to 42611395 54612 - protein coding gene opsin 5
Tssr144655 17 42645313 to 42645320 7 + TSS region transcription start site region 144655
Adgrf4 17 42656891 to 42692284 35393 - protein coding gene adhesion G protein-coupled receptor F4
Tssr148094 17 42692211 to 42692238 27 - TSS region transcription start site region 148094
Tssr148095 17 42692244 to 42692289 45 - TSS region transcription start site region 148095
Tssr148096 17 42692302 to 42692322 20 - TSS region transcription start site region 148096
Adgrf2 17 42708936 to 42742179 33243 - protein coding gene adhesion G protein-coupled receptor F2
Gm5978 17 42727173 to 42728036 863 + pseudogene predicted gene 5978
Hbnr7 17 42740294 to 51432094 8691800 QTL Heligmosomoides bakeri nematode resistance 7
Bbaa8 17 42740294 to 43665344 925050 QTL B.burgdorferi-associated arthritis 8
Bbaa29 17 42740294 to 42740461 167 QTL B.burgdorferi-associated arthritis 29
D17Mit176 17 42740294 to 42740461 167 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 176
Tssr148097 17 42742024 to 42742027 3 - TSS region transcription start site region 148097
Tssr148098 17 42742052 to 42742085 33 - TSS region transcription start site region 148098
Tssr148099 17 42742125 to 42742137 12 - TSS region transcription start site region 148099
Tssr148100 17 42742145 to 42742162 17 - TSS region transcription start site region 148100
Tssr148101 17 42742167 to 42742189 22 - TSS region transcription start site region 148101
Cd2ap 17 42792951 to 42876665 83714 - protein coding gene CD2-associated protein
Tssr148102 17 42795926 to 42795962 36 - TSS region transcription start site region 148102
Tssr148103 17 42823419 to 42823429 10 - TSS region transcription start site region 148103
Cpgi9164 17 42875793 to 42877027 1234 CpG island CpG island 9164
Tssr148104 17 42876409 to 42876416 7 - TSS region transcription start site region 148104
Tssr148105 17 42876417 to 42876431 14 - TSS region transcription start site region 148105
Tssr148106 17 42876442 to 42876455 13 - TSS region transcription start site region 148106
Tssr148107 17 42876544 to 42876549 5 - TSS region transcription start site region 148107
Tssr148108 17 42876551 to 42876560 9 - TSS region transcription start site region 148108
Tssr148109 17 42876616 to 42876676 60 - TSS region transcription start site region 148109
Tssr148110 17 42876678 to 42876692 14 - TSS region transcription start site region 148110
Tssr144656 17 42876949 to 42876953 4 + TSS region transcription start site region 144656
Cpgi9165 17 42975655 to 42975819 164 CpG island CpG island 9165
Cpgi9166 17 43016394 to 43017934 1540 CpG island CpG island 9166
Tssr144657 17 43016509 to 43016518 9 + TSS region transcription start site region 144657
Tssr144658 17 43016522 to 43016535 13 + TSS region transcription start site region 144658
Tssr144659 17 43016536 to 43016591 55 + TSS region transcription start site region 144659
Tnfrsf21 17 43016555 to 43089188 72633 + protein coding gene tumor necrosis factor receptor superfamily, member 21
Tssr148111 17 43017547 to 43017558 11 - TSS region transcription start site region 148111
Cpgi9167 17 43026192 to 43026381 189 CpG island CpG island 9167
Tssr144660 17 43027122 to 43027123 1 + TSS region transcription start site region 144660
Tssr144661 17 43036348 to 43036382 34 + TSS region transcription start site region 144661
Tssr144662 17 43037684 to 43037696 12 + TSS region transcription start site region 144662
Tssr144663 17 43045917 to 43045933 16 + TSS region transcription start site region 144663
Tssr144664 17 43077311 to 43077318 7 + TSS region transcription start site region 144664
Tssr144665 17 43087762 to 43087773 11 + TSS region transcription start site region 144665
Tssr144666 17 43087898 to 43087912 14 + TSS region transcription start site region 144666
Tssr144667 17 43087989 to 43088002 13 + TSS region transcription start site region 144667
Tssr144668 17 43088008 to 43088025 17 + TSS region transcription start site region 144668
Gm34627 17 43109663 to 43117134 7471 - lncRNA gene predicted gene, 34627
Tssr148112 17 43113194 to 43113203 9 - TSS region transcription start site region 148112
A930008B05Rik 17 43132037 to 43133149 1112 unclassified gene RIKEN cDNA A930008B05 gene