Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:39846480-41276487

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eye2 17 26286363 to 40794146 14507783 QTL eye weight 2
Cpgi9159 17 39842987 to 39848831 5844 CpG island CpG island 9159
Rn18s 17 39845170 to 39848200 3030 pseudogene 18S ribosomal RNA
Tssr144603 17 39846452 to 39846504 52 + TSS region transcription start site region 144603
Tssr144604 17 39846510 to 39846525 15 + TSS region transcription start site region 144604
Tssr148062 17 39846523 to 39846541 18 - TSS region transcription start site region 148062
Tssr144605 17 39846560 to 39846573 13 + TSS region transcription start site region 144605
Tssr144606 17 39846618 to 39846657 39 + TSS region transcription start site region 144606
Tssr148063 17 39846654 to 39846683 29 - TSS region transcription start site region 148063
Tssr144607 17 39846727 to 39846758 31 + TSS region transcription start site region 144607
Tssr144608 17 39846874 to 39846894 20 + TSS region transcription start site region 144608
Tssr148064 17 39846896 to 39846909 13 - TSS region transcription start site region 148064
Gm42418 17 39846958 to 39848788 1830 + lincRNA gene predicted gene, 42418
Tssr144609 17 39847018 to 39847059 41 + TSS region transcription start site region 144609
AY036118 17 39847113 to 39848035 922 - lincRNA gene cDNA sequence AY036118
Tssr144610 17 39847177 to 39847215 38 + TSS region transcription start site region 144610
Tssr144611 17 39847314 to 39847338 24 + TSS region transcription start site region 144611
Tssr144612 17 39847443 to 39847448 5 + TSS region transcription start site region 144612
Tssr144613 17 39847562 to 39847592 30 + TSS region transcription start site region 144613
Tssr144614 17 39847594 to 39847614 20 + TSS region transcription start site region 144614
Tssr144615 17 39847681 to 39847695 14 + TSS region transcription start site region 144615
Tssr144616 17 39847716 to 39847785 69 + TSS region transcription start site region 144616
Tssr148065 17 39847758 to 39847784 26 - TSS region transcription start site region 148065
Tssr144617 17 39847789 to 39847812 23 + TSS region transcription start site region 144617
Tssr144618 17 39847819 to 39847829 10 + TSS region transcription start site region 144618
Tssr148066 17 39847834 to 39847861 27 - TSS region transcription start site region 148066
Tssr144619 17 39847841 to 39847872 31 + TSS region transcription start site region 144619
Tssr144620 17 39847890 to 39847895 5 + TSS region transcription start site region 144620
Tssr148067 17 39847915 to 39847961 46 - TSS region transcription start site region 148067
Tssr144621 17 39847995 to 39848009 14 + TSS region transcription start site region 144621
Tssr144622 17 39848014 to 39848025 11 + TSS region transcription start site region 144622
Tssr148068 17 39848031 to 39848059 28 - TSS region transcription start site region 148068
Tssr144623 17 39848053 to 39848055 2 + TSS region transcription start site region 144623
Tssr144624 17 39848150 to 39848190 40 + TSS region transcription start site region 144624
Tssr144625 17 39848192 to 39848207 15 + TSS region transcription start site region 144625
Tssr144626 17 39848209 to 39848236 27 + TSS region transcription start site region 144626
Tssr148069 17 39848226 to 39848242 16 - TSS region transcription start site region 148069
Tssr144627 17 39848248 to 39848268 20 + TSS region transcription start site region 144627
Tssr148070 17 39848295 to 39848306 11 - TSS region transcription start site region 148070
Tssr148071 17 39848308 to 39848332 24 - TSS region transcription start site region 148071
Tssr144628 17 39848418 to 39848427 9 + TSS region transcription start site region 144628
Tssr144629 17 39848449 to 39848501 52 + TSS region transcription start site region 144629
Tssr144630 17 39848505 to 39848510 5 + TSS region transcription start site region 144630
Tssr144631 17 39848526 to 39848607 81 + TSS region transcription start site region 144631
Tssr148072 17 39848637 to 39848660 23 - TSS region transcription start site region 148072
Tssr144632 17 39848698 to 39848717 19 + TSS region transcription start site region 144632
Tssr144633 17 39848751 to 39848764 13 + TSS region transcription start site region 144633
Gm49834 17 39920516 to 39920734 218 + pseudogene predicted gene, 49834
Esp38 17 39950520 to 39955287 4767 + protein coding gene exocrine gland secreted peptide 38
Gm26376 17 40051904 to 40052013 109 + miRNA gene predicted gene, 26376
Gm49835 17 40095450 to 40100099 4649 + protein coding gene predicted gene, 49835
Tgif2-ps2 17 40115358 to 40116326 968 + pseudogene TGFB-induced factor homeobox 2, pseudogene 2
Gm49836 17 40129159 to 40131607 2448 + pseudogene predicted gene, 49836
Gm49837 17 40187675 to 40187893 218 + pseudogene predicted gene, 49837
Pgk2 17 40207018 to 40208609 1591 - protein coding gene phosphoglycerate kinase 2
Tssr148073 17 40208559 to 40208584 25 - TSS region transcription start site region 148073
Tssr148074 17 40208589 to 40208616 27 - TSS region transcription start site region 148074
Crisp3 17 40221777 to 40242258 20481 - protein coding gene cysteine-rich secretory protein 3
Tssr148075 17 40221962 to 40221965 3 - TSS region transcription start site region 148075
Tssr144634 17 40222309 to 40222336 27 + TSS region transcription start site region 144634
Tssr148076 17 40222335 to 40222344 9 - TSS region transcription start site region 148076
Tssr148077 17 40223921 to 40223923 2 - TSS region transcription start site region 148077
Tssr148078 17 40230875 to 40230877 2 - TSS region transcription start site region 148078
Tssr148079 17 40232587 to 40232597 10 - TSS region transcription start site region 148079
Tssr148080 17 40232608 to 40232617 9 - TSS region transcription start site region 148080
Tssr5119 17 40235871 to 40235876 5 - TSS region transcription start site region 5119
Tssr5120 17 40239205 to 40239219 14 - TSS region transcription start site region 5120
Tssr148081 17 40242285 to 40242289 4 - TSS region transcription start site region 148081
Tssr148082 17 40242379 to 40242384 5 - TSS region transcription start site region 148082
Crisp1 17 40293758 to 40319207 25449 - protein coding gene cysteine-rich secretory protein 1
Tssr144635 17 40294308 to 40294321 13 + TSS region transcription start site region 144635
Tssr144636 17 40298186 to 40298217 31 + TSS region transcription start site region 144636
Tssr148083 17 40298218 to 40298227 9 - TSS region transcription start site region 148083
Tssr148084 17 40319205 to 40319208 3 - TSS region transcription start site region 148084
Tssr148085 17 40319300 to 40319304 4 - TSS region transcription start site region 148085
Gm49840 17 40418667 to 40418825 158 + pseudogene predicted gene, 49840
Gm49841 17 40433866 to 40434787 921 + pseudogene predicted gene, 49841
Tssr5121 17 40442996 to 40442998 2 + TSS region transcription start site region 5121
Gm49843 17 40449276 to 40449348 72 + pseudogene predicted gene, 49843
Gm45926 17 40451287 to 40451656 369 - pseudogene predicted gene, 45926
Gm34266 17 40453694 to 40454366 672 + pseudogene predicted gene, 34266
C330004N01Rik 17 40455942 to 40495547 39605 lncRNA gene RIKEN cDNA C330004N01 gene
Gm49844 17 40462096 to 40470817 8721 + pseudogene predicted gene, 49844
Gm49845 17 40487473 to 40489700 2227 + pseudogene predicted gene, 49845
Gm49846 17 40499770 to 40516810 17040 + pseudogene predicted gene, 49846
Tssr144637 17 40520019 to 40520028 9 + TSS region transcription start site region 144637
Esp8 17 40520022 to 40530421 10399 + protein coding gene exocrine gland secreted peptide 8
Tssr144638 17 40520030 to 40520044 14 + TSS region transcription start site region 144638
Gm49847 17 40520157 to 40525059 4902 - unclassified gene predicted gene, 49847
Gm29748 17 40552598 to 40552855 257 + pseudogene predicted gene, 29748
Gm46573 17 40554729 to 40557393 2664 + pseudogene predicted gene, 46573
Tssr144639 17 40561480 to 40561487 7 + TSS region transcription start site region 144639
Tssr144640 17 40561498 to 40561512 14 + TSS region transcription start site region 144640
Esp6 17 40561507 to 40565627 4120 + protein coding gene exocrine gland secreted peptide 6
Gm44501 17 40561507 to 40579549 18042 + protein coding gene predicted readthrough transcript, 44501
Esp5 17 40576593 to 40579049 2456 + protein coding gene exocrine gland secreted peptide 5
Tssr144641 17 40580440 to 40580446 6 + TSS region transcription start site region 144641
Esp4 17 40598594 to 40602618 4024 + protein coding gene exocrine gland secreted peptide 4
Esp3 17 40632075 to 40637060 4985 + protein coding gene exocrine gland secreted peptide 3
Gm49850 17 40698070 to 40700207 2137 + pseudogene predicted gene, 49850
D17Mit104 17 40724449 to 40724558 109 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 104
Tssr144642 17 40727104 to 40727110 6 + TSS region transcription start site region 144642
Esp1 17 40727120 to 40731782 4662 + protein coding gene exocrine gland secreted peptide 1
Crisp2 17 40764734 to 40794146 29412 - protein coding gene cysteine-rich secretory protein 2
Tssr148086 17 40792675 to 40792681 6 - TSS region transcription start site region 148086
Tssr148087 17 40794063 to 40794091 28 - TSS region transcription start site region 148087
Tssr144643 17 40811089 to 40811133 44 + TSS region transcription start site region 144643
Rhag 17 40811126 to 40840754 29628 + protein coding gene Rhesus blood group-associated A glycoprotein
Tssr144644 17 40811139 to 40811174 35 + TSS region transcription start site region 144644
Tssr144645 17 40811183 to 40811188 5 + TSS region transcription start site region 144645
Tssr144646 17 40816706 to 40816708 2 + TSS region transcription start site region 144646
Gm20574 17 40854036 to 40868141 14105 + pseudogene predicted gene, 20574
9130008F23Rik 17 40875482 to 40880558 5076 - protein coding gene RIKEN cDNA 9130008F23 gene
Cpgi9160 17 40879910 to 40880545 635 CpG island CpG island 9160
Tssr148088 17 40880022 to 40880027 5 - TSS region transcription start site region 148088
Tssr148089 17 40880344 to 40880358 14 - TSS region transcription start site region 148089
Tssr148090 17 40880525 to 40880579 54 - TSS region transcription start site region 148090
Glyatl3 17 40904618 to 40914350 9732 - protein coding gene glycine-N-acyltransferase-like 3
D17Mit272 17 40911934 to 40912046 112 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-272
Gm23078 17 40917540 to 40917687 147 - snRNA gene predicted gene, 23078
Cenpq 17 40923055 to 40934551 11496 - protein coding gene centromere protein Q
Cpgi9161 17 40934404 to 40935160 756 CpG island CpG island 9161
Tssr148091 17 40934449 to 40934493 44 - TSS region transcription start site region 148091
Tssr148092 17 40934497 to 40934609 112 - TSS region transcription start site region 148092
Tssr144647 17 40934676 to 40934751 75 + TSS region transcription start site region 144647
Mmut 17 40934685 to 40961988 27303 + protein coding gene methylmalonyl-Coenzyme A mutase
Tssr144648 17 40937113 to 40937123 10 + TSS region transcription start site region 144648
D17Mit126 17 41001605 to 41001741 136 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 126
Gm49854 17 41006048 to 41006306 258 - pseudogene predicted gene, 49854
Gm49855 17 41059652 to 41060057 405 - pseudogene predicted gene, 49855
Gm49857 17 41071123 to 41140201 69078 + lincRNA gene predicted gene, 49857
Ldha-ps3 17 41101038 to 41102228 1190 + pseudogene lactate dehydrogenase A, pseudogene 3
D17Ertd191e 17 41139454 to 41139654 200 DNA segment DNA segment, Chr 17, ERATO Doi 191, expressed