Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:38824734-42734146

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203 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfnq4 17 10987597 to 39053168 28065571 QTL lung function QTL 4
Eye2 17 26286363 to 40794146 14507783 QTL eye weight 2
Gm49820 17 38830842 to 38832328 1486 + pseudogene predicted gene, 49820
Gm49821 17 38853507 to 38856838 3331 + pseudogene predicted gene, 49821
Gm49822 17 38876927 to 38877070 143 + pseudogene predicted gene, 49822
Gm49823 17 38887755 to 38889225 1470 + pseudogene predicted gene, 49823
Gm49824 17 38889494 to 38889580 86 - pseudogene predicted gene, 49824
Gm49825 17 38926257 to 38930249 3992 + pseudogene predicted gene, 49825
Ewc7 17 38990980 to 38990980 0 QTL ethanol withdrawal and consumption 7
Gm49826 17 39029464 to 39029585 121 - pseudogene predicted gene, 49826
Tssr144598 17 39036694 to 39036696 2 + TSS region transcription start site region 144598
Esp24 17 39036695 to 39040227 3532 + protein coding gene exocrine gland secreted peptide 24
Gm21903 17 39042634 to 39043341 707 - protein coding gene predicted gene, 21903
D17Mit234 17 39053044 to 39053168 124 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 234
Esp23 17 39073691 to 39077037 3346 - protein coding gene exocrine gland secreted peptide 23
Esp22 17 39095334 to 39097151 1817 + protein coding gene exocrine gland secreted peptide 22
Tssr144599 17 39106971 to 39106978 7 + TSS region transcription start site region 144599
Gm18784 17 39113387 to 39115485 2098 + pseudogene predicted gene, 18784
Gm49827 17 39117996 to 39120003 2007 - pseudogene predicted gene, 49827
Gm49828 17 39177543 to 39179775 2232 - pseudogene predicted gene, 49828
Gm49829 17 39252755 to 39258236 5481 + pseudogene predicted gene, 49829
Gm49830 17 39377211 to 39377408 197 - pseudogene predicted gene, 49830
Tssr5118 17 39406346 to 39406355 9 + TSS region transcription start site region 5118
Esp18 17 39406359 to 39410992 4633 + protein coding gene exocrine gland secreted peptide 18
Tssr144600 17 39406405 to 39406431 26 + TSS region transcription start site region 144600
Gm49831 17 39436912 to 39439419 2507 + pseudogene predicted gene, 49831
Gm26429 17 39460330 to 39460439 109 - miRNA gene predicted gene, 26429
Tssr144601 17 39501969 to 39501975 6 + TSS region transcription start site region 144601
Esp16 17 39536142 to 39540847 4705 + protein coding gene exocrine gland secreted peptide 16
Gm49832 17 39636968 to 39637144 176 - pseudogene predicted gene, 49832
Esp15 17 39640957 to 39645667 4710 + protein coding gene exocrine gland secreted peptide 15
Gm49833 17 39811786 to 39812022 236 - pseudogene predicted gene, 49833
Cpgi9159 17 39842987 to 39848831 5844 CpG island CpG island 9159
Gm26917 17 39843013 to 39846341 3328 + lincRNA gene predicted gene, 26917
Tssr148051 17 39843320 to 39843329 9 - TSS region transcription start site region 148051
Tssr148052 17 39843483 to 39843543 60 - TSS region transcription start site region 148052
Tssr148053 17 39843628 to 39843649 21 - TSS region transcription start site region 148053
Tssr148054 17 39844131 to 39844161 30 - TSS region transcription start site region 148054
Tssr148055 17 39844375 to 39844410 35 - TSS region transcription start site region 148055
Tssr148056 17 39844717 to 39844758 41 - TSS region transcription start site region 148056
Tssr148057 17 39845122 to 39845150 28 - TSS region transcription start site region 148057
Rn18s 17 39845170 to 39848200 3030 pseudogene 18S ribosomal RNA
Tssr148058 17 39845743 to 39845755 12 - TSS region transcription start site region 148058
Tssr148059 17 39845778 to 39845787 9 - TSS region transcription start site region 148059
Tssr148060 17 39845899 to 39845939 40 - TSS region transcription start site region 148060
Tssr148061 17 39846008 to 39846024 16 - TSS region transcription start site region 148061
Tssr144602 17 39846347 to 39846361 14 + TSS region transcription start site region 144602
Tssr144603 17 39846452 to 39846504 52 + TSS region transcription start site region 144603
Tssr144604 17 39846510 to 39846525 15 + TSS region transcription start site region 144604
Tssr148062 17 39846523 to 39846541 18 - TSS region transcription start site region 148062
Tssr144605 17 39846560 to 39846573 13 + TSS region transcription start site region 144605
Tssr144606 17 39846618 to 39846657 39 + TSS region transcription start site region 144606
Tssr148063 17 39846654 to 39846683 29 - TSS region transcription start site region 148063
Tssr144607 17 39846727 to 39846758 31 + TSS region transcription start site region 144607
Tssr144608 17 39846874 to 39846894 20 + TSS region transcription start site region 144608
Tssr148064 17 39846896 to 39846909 13 - TSS region transcription start site region 148064
Gm42418 17 39846958 to 39848788 1830 + lincRNA gene predicted gene, 42418
Tssr144609 17 39847018 to 39847059 41 + TSS region transcription start site region 144609
AY036118 17 39847113 to 39848035 922 - lincRNA gene cDNA sequence AY036118
Tssr144610 17 39847177 to 39847215 38 + TSS region transcription start site region 144610
Tssr144611 17 39847314 to 39847338 24 + TSS region transcription start site region 144611
Tssr144612 17 39847443 to 39847448 5 + TSS region transcription start site region 144612
Tssr144613 17 39847562 to 39847592 30 + TSS region transcription start site region 144613
Tssr144614 17 39847594 to 39847614 20 + TSS region transcription start site region 144614
Tssr144615 17 39847681 to 39847695 14 + TSS region transcription start site region 144615
Tssr144616 17 39847716 to 39847785 69 + TSS region transcription start site region 144616
Tssr148065 17 39847758 to 39847784 26 - TSS region transcription start site region 148065
Tssr144617 17 39847789 to 39847812 23 + TSS region transcription start site region 144617
Tssr144618 17 39847819 to 39847829 10 + TSS region transcription start site region 144618
Tssr148066 17 39847834 to 39847861 27 - TSS region transcription start site region 148066
Tssr144619 17 39847841 to 39847872 31 + TSS region transcription start site region 144619
Tssr144620 17 39847890 to 39847895 5 + TSS region transcription start site region 144620
Tssr148067 17 39847915 to 39847961 46 - TSS region transcription start site region 148067
Tssr144621 17 39847995 to 39848009 14 + TSS region transcription start site region 144621
Tssr144622 17 39848014 to 39848025 11 + TSS region transcription start site region 144622
Tssr148068 17 39848031 to 39848059 28 - TSS region transcription start site region 148068
Tssr144623 17 39848053 to 39848055 2 + TSS region transcription start site region 144623
Tssr144624 17 39848150 to 39848190 40 + TSS region transcription start site region 144624
Tssr144625 17 39848192 to 39848207 15 + TSS region transcription start site region 144625
Tssr144626 17 39848209 to 39848236 27 + TSS region transcription start site region 144626
Tssr148069 17 39848226 to 39848242 16 - TSS region transcription start site region 148069
Tssr144627 17 39848248 to 39848268 20 + TSS region transcription start site region 144627
Tssr148070 17 39848295 to 39848306 11 - TSS region transcription start site region 148070
Tssr148071 17 39848308 to 39848332 24 - TSS region transcription start site region 148071
Tssr144628 17 39848418 to 39848427 9 + TSS region transcription start site region 144628
Tssr144629 17 39848449 to 39848501 52 + TSS region transcription start site region 144629
Tssr144630 17 39848505 to 39848510 5 + TSS region transcription start site region 144630
Tssr144631 17 39848526 to 39848607 81 + TSS region transcription start site region 144631
Tssr148072 17 39848637 to 39848660 23 - TSS region transcription start site region 148072
Tssr144632 17 39848698 to 39848717 19 + TSS region transcription start site region 144632
Tssr144633 17 39848751 to 39848764 13 + TSS region transcription start site region 144633
Gm49834 17 39920516 to 39920734 218 + pseudogene predicted gene, 49834
Esp38 17 39950520 to 39955287 4767 + protein coding gene exocrine gland secreted peptide 38
Gm26376 17 40051904 to 40052013 109 + miRNA gene predicted gene, 26376
Gm49835 17 40095450 to 40100099 4649 + protein coding gene predicted gene, 49835
Tgif2-ps2 17 40115358 to 40116326 968 + pseudogene TGFB-induced factor homeobox 2, pseudogene 2
Gm49836 17 40129159 to 40131607 2448 + pseudogene predicted gene, 49836
Gm49837 17 40187675 to 40187893 218 + pseudogene predicted gene, 49837
Pgk2 17 40207018 to 40208609 1591 - protein coding gene phosphoglycerate kinase 2
Tssr148073 17 40208559 to 40208584 25 - TSS region transcription start site region 148073
Tssr148074 17 40208589 to 40208616 27 - TSS region transcription start site region 148074
Crisp3 17 40221777 to 40242258 20481 - protein coding gene cysteine-rich secretory protein 3
Tssr148075 17 40221962 to 40221965 3 - TSS region transcription start site region 148075
Tssr144634 17 40222309 to 40222336 27 + TSS region transcription start site region 144634
Tssr148076 17 40222335 to 40222344 9 - TSS region transcription start site region 148076
Tssr148077 17 40223921 to 40223923 2 - TSS region transcription start site region 148077
Tssr148078 17 40230875 to 40230877 2 - TSS region transcription start site region 148078
Tssr148079 17 40232587 to 40232597 10 - TSS region transcription start site region 148079
Tssr148080 17 40232608 to 40232617 9 - TSS region transcription start site region 148080
Tssr5119 17 40235871 to 40235876 5 - TSS region transcription start site region 5119
Tssr5120 17 40239205 to 40239219 14 - TSS region transcription start site region 5120
Tssr148081 17 40242285 to 40242289 4 - TSS region transcription start site region 148081
Tssr148082 17 40242379 to 40242384 5 - TSS region transcription start site region 148082
Crisp1 17 40293758 to 40319207 25449 - protein coding gene cysteine-rich secretory protein 1
Tssr144635 17 40294308 to 40294321 13 + TSS region transcription start site region 144635
Tssr144636 17 40298186 to 40298217 31 + TSS region transcription start site region 144636
Tssr148083 17 40298218 to 40298227 9 - TSS region transcription start site region 148083
Tssr148084 17 40319205 to 40319208 3 - TSS region transcription start site region 148084
Tssr148085 17 40319300 to 40319304 4 - TSS region transcription start site region 148085
Gm49840 17 40418667 to 40418825 158 + pseudogene predicted gene, 49840
Gm49841 17 40433866 to 40434787 921 + pseudogene predicted gene, 49841
Tssr5121 17 40442996 to 40442998 2 + TSS region transcription start site region 5121
Gm49843 17 40449276 to 40449348 72 + pseudogene predicted gene, 49843
Gm45926 17 40451287 to 40451656 369 - pseudogene predicted gene, 45926
Gm34266 17 40453694 to 40454366 672 + pseudogene predicted gene, 34266
C330004N01Rik 17 40455942 to 40495547 39605 lncRNA gene RIKEN cDNA C330004N01 gene
Gm49844 17 40462096 to 40470817 8721 + pseudogene predicted gene, 49844
Gm49845 17 40487473 to 40489700 2227 + pseudogene predicted gene, 49845
Gm49846 17 40499770 to 40516810 17040 + pseudogene predicted gene, 49846
Tssr144637 17 40520019 to 40520028 9 + TSS region transcription start site region 144637
Esp8 17 40520022 to 40530421 10399 + protein coding gene exocrine gland secreted peptide 8
Tssr144638 17 40520030 to 40520044 14 + TSS region transcription start site region 144638
Gm49847 17 40520157 to 40525059 4902 - unclassified gene predicted gene, 49847
Gm29748 17 40552598 to 40552855 257 + pseudogene predicted gene, 29748
Gm46573 17 40554729 to 40557393 2664 + pseudogene predicted gene, 46573
Tssr144639 17 40561480 to 40561487 7 + TSS region transcription start site region 144639
Tssr144640 17 40561498 to 40561512 14 + TSS region transcription start site region 144640
Gm44501 17 40561507 to 40579549 18042 + protein coding gene predicted readthrough transcript, 44501
Esp6 17 40561507 to 40565627 4120 + protein coding gene exocrine gland secreted peptide 6
Esp5 17 40576593 to 40579049 2456 + protein coding gene exocrine gland secreted peptide 5
Tssr144641 17 40580440 to 40580446 6 + TSS region transcription start site region 144641
Esp4 17 40598594 to 40602618 4024 + protein coding gene exocrine gland secreted peptide 4
Esp3 17 40632075 to 40637060 4985 + protein coding gene exocrine gland secreted peptide 3
Gm49850 17 40698070 to 40700207 2137 + pseudogene predicted gene, 49850
D17Mit104 17 40724449 to 40724558 109 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 104
Tssr144642 17 40727104 to 40727110 6 + TSS region transcription start site region 144642
Esp1 17 40727120 to 40731782 4662 + protein coding gene exocrine gland secreted peptide 1
Crisp2 17 40764734 to 40794146 29412 - protein coding gene cysteine-rich secretory protein 2
Tssr148086 17 40792675 to 40792681 6 - TSS region transcription start site region 148086
Tssr148087 17 40794063 to 40794091 28 - TSS region transcription start site region 148087
Tssr144643 17 40811089 to 40811133 44 + TSS region transcription start site region 144643
Rhag 17 40811126 to 40840754 29628 + protein coding gene Rhesus blood group-associated A glycoprotein
Tssr144644 17 40811139 to 40811174 35 + TSS region transcription start site region 144644
Tssr144645 17 40811183 to 40811188 5 + TSS region transcription start site region 144645
Tssr144646 17 40816706 to 40816708 2 + TSS region transcription start site region 144646
Gm20574 17 40854036 to 40868141 14105 + pseudogene predicted gene, 20574
9130008F23Rik 17 40875482 to 40880558 5076 - protein coding gene RIKEN cDNA 9130008F23 gene
Cpgi9160 17 40879910 to 40880545 635 CpG island CpG island 9160
Tssr148088 17 40880022 to 40880027 5 - TSS region transcription start site region 148088
Tssr148089 17 40880344 to 40880358 14 - TSS region transcription start site region 148089
Tssr148090 17 40880525 to 40880579 54 - TSS region transcription start site region 148090
Glyatl3 17 40904618 to 40914350 9732 - protein coding gene glycine-N-acyltransferase-like 3
D17Mit272 17 40911934 to 40912046 112 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-272
Gm23078 17 40917540 to 40917687 147 - snRNA gene predicted gene, 23078
Cenpq 17 40923055 to 40934551 11496 - protein coding gene centromere protein Q
Cpgi9161 17 40934404 to 40935160 756 CpG island CpG island 9161
Tssr148091 17 40934449 to 40934493 44 - TSS region transcription start site region 148091
Tssr148092 17 40934497 to 40934609 112 - TSS region transcription start site region 148092
Tssr144647 17 40934676 to 40934751 75 + TSS region transcription start site region 144647
Mmut 17 40934685 to 40961988 27303 + protein coding gene methylmalonyl-Coenzyme A mutase
Tssr144648 17 40937113 to 40937123 10 + TSS region transcription start site region 144648
D17Mit126 17 41001605 to 41001741 136 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 126
Gm49854 17 41006048 to 41006306 258 - pseudogene predicted gene, 49854
Gm49855 17 41059652 to 41060057 405 - pseudogene predicted gene, 49855
Gm49857 17 41071123 to 41140201 69078 + lincRNA gene predicted gene, 49857
Ldha-ps3 17 41101038 to 41102228 1190 + pseudogene lactate dehydrogenase A, pseudogene 3
D17Ertd191e 17 41139454 to 41139654 200 DNA segment DNA segment, Chr 17, ERATO Doi 191, expressed
Eae5 17 41301859 to 41301973 114 QTL experimental allergic encephalomyelitis susceptibility 5
D17Mit105 17 41301859 to 41301973 114 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 105
Gm6771 17 41345997 to 41346997 1000 + pseudogene predicted gene 6771
Gm49858 17 41662393 to 41663688 1295 - pseudogene predicted gene, 49858
Tssr144649 17 41752548 to 41752556 8 + TSS region transcription start site region 144649
D17Mit263 17 41757485 to 41757587 102 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 263
D17Mit124 17 41798223 to 41798371 148 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 124
Cpgi9162 17 41958591 to 41958822 231 CpG island CpG island 9162
Gm19847 17 42010656 to 42010873 217 - pseudogene predicted gene, 19847
Cpgi9163 17 42315738 to 42316984 1246 CpG island CpG island 9163
Ptchd4 17 42315947 to 42505077 189130 + protein coding gene patched domain containing 4
Tssr144650 17 42316663 to 42316683 20 + TSS region transcription start site region 144650
B930007P11Rik 17 42340551 to 42343195 2644 unclassified gene RIKEN cDNA B930007P11 gene
Tssr148093 17 42372820 to 42372822 2 - TSS region transcription start site region 148093
Tssr144651 17 42380860 to 42380871 11 + TSS region transcription start site region 144651
Tssr144652 17 42435804 to 42435808 4 + TSS region transcription start site region 144652
Tssr144653 17 42501491 to 42501496 5 + TSS region transcription start site region 144653
Tssr144654 17 42508426 to 42508430 4 + TSS region transcription start site region 144654
Opn5 17 42556783 to 42611395 54612 - protein coding gene opsin 5
Tssr144655 17 42645313 to 42645320 7 + TSS region transcription start site region 144655
Adgrf4 17 42656891 to 42692284 35393 - protein coding gene adhesion G protein-coupled receptor F4
Tssr148094 17 42692211 to 42692238 27 - TSS region transcription start site region 148094
Tssr148095 17 42692244 to 42692289 45 - TSS region transcription start site region 148095