Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:3862153-5192324

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi8550 17 3878879 to 3879130 251 CpG island CpG island 8550
D17Mit164 17 3924615 to 3924747 132 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 164
l17J1 17 3924615 to 6096434 2171819 heritable phenotypic marker lethal, Chr 17, Jackson 1
Myaa1 17 3924615 to 3924747 132 QTL modifier of Yaa 1
Bhr3 17 3924615 to 48559063 44634448 QTL bronchial hyperresponsiveness 3
l17J2 17 3924615 to 6096434 2171819 heritable phenotypic marker lethal, Chr 17, Jackson 2
Vtbt18 17 3924615 to 3924747 132 QTL vertebral trabecular bone trait 18
Tssr146293 17 4030939 to 4030944 5 - TSS region transcription start site region 146293
4930470H14Rik 17 4044658 to 4082995 38337 - lincRNA gene RIKEN cDNA 4930470H14 gene
4930548J01Rik 17 4119446 to 4122102 2656 - lncRNA gene RIKEN cDNA 4930548J01 gene
Tssr146294 17 4122088 to 4122137 49 - TSS region transcription start site region 146294
D17Brg198 17 4158105 to 4158283 178 DNA segment DNA segment, Chr 17, David E. Bergstrom 198
D17Brg199 17 4174576 to 4174753 177 DNA segment DNA segment, Chr 17, David E. Bergstrom 199
Gm41516 17 4186468 to 4192986 6518 - lncRNA gene predicted gene, 41516
Tssr4983 17 4196914 to 4196933 19 - TSS region transcription start site region 4983
D17Brg125 17 4281244 to 4281434 190 DNA segment DNA segment, Chr 17, David E. Bergstrom 125
Tssr146295 17 4281603 to 4281612 9 - TSS region transcription start site region 146295
D17Brg140 17 4415582 to 4415769 187 DNA segment DNA segment, Chr 17, David E. Bergstrom 140
D17Brg152 17 4518444 to 4518633 189 DNA segment DNA segment, Chr 17, David E. Bergstrom 152
D17Brg153 17 4527153 to 4527324 171 DNA segment DNA segment, Chr 17, David E. Bergstrom 153
Gm34259 17 4612379 to 4633520 21141 + lncRNA gene predicted gene, 34259
4930517M08Rik 17 4634978 to 4637471 2493 + lincRNA gene RIKEN cDNA 4930517M08 gene
Gm23186 17 4678020 to 4678126 106 + snRNA gene predicted gene, 23186
D17Mit223 17 4780494 to 4780618 124 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 223
Gm49780 17 4792646 to 4792959 313 - pseudogene predicted gene, 49780
Gm34371 17 4794550 to 4797430 2880 + lncRNA gene predicted gene, 34371
Tssr142376 17 4794686 to 4794698 12 + TSS region transcription start site region 142376
Tssr142377 17 4794704 to 4794727 23 + TSS region transcription start site region 142377
Tfv1 17 4804477 to 65330362 60525885 QTL total food volume 1
D17Mit19 17 4804477 to 4804658 181 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 19
4930579D07Rik 17 4851698 to 4892987 41289 - lincRNA gene RIKEN cDNA 4930579D07 gene
Cpgi8551 17 4854106 to 4854336 230 CpG island CpG island 8551
Tssr142378 17 4880579 to 4880581 2 + TSS region transcription start site region 142378
Gm4828 17 4880626 to 4881115 489 + pseudogene predicted gene 4828
Cpgi8552 17 4907893 to 4908850 957 CpG island CpG island 8552
Gm34507 17 4908010 to 4914351 6341 + protein coding gene predicted gene, 34507
Tssr146296 17 4908539 to 4908571 32 - TSS region transcription start site region 146296
Gm41517 17 4945152 to 4946814 1662 - lincRNA gene predicted gene, 41517
Gm34625 17 4954198 to 4960852 6654 + lncRNA gene predicted gene, 34625
Cpgi8553 17 4993726 to 4996994 3268 CpG island CpG island 8553
Tssr142379 17 4994286 to 4994373 87 + TSS region transcription start site region 142379
Arid1b 17 4994332 to 5347656 353324 + protein coding gene AT rich interactive domain 1B (SWI-like)
Tssr142380 17 4994491 to 4994531 40 + TSS region transcription start site region 142380
Tssr4984 17 4994612 to 4994658 46 + TSS region transcription start site region 4984
Tssr142381 17 4994697 to 4994730 33 + TSS region transcription start site region 142381
Tssr142382 17 4994904 to 4994953 49 + TSS region transcription start site region 142382
Tssr142383 17 4995664 to 4995693 29 + TSS region transcription start site region 142383
Tssr142384 17 4995902 to 4995959 57 + TSS region transcription start site region 142384
Tssr142385 17 4995982 to 4995989 7 + TSS region transcription start site region 142385
Tssr142386 17 5000550 to 5000553 3 + TSS region transcription start site region 142386
Tssr142387 17 5012808 to 5012832 24 + TSS region transcription start site region 142387
Tssr142388 17 5012841 to 5012852 11 + TSS region transcription start site region 142388
Tssr142389 17 5057966 to 5057969 3 + TSS region transcription start site region 142389
Tssr146297 17 5058488 to 5058503 15 - TSS region transcription start site region 146297
D17Jcs97 17 5069733 to 5069942 209 DNA segment DNA segment, Chr 17, John C. Schimenti 97
Tssr142390 17 5072989 to 5072992 3 + TSS region transcription start site region 142390
Tssr142391 17 5089896 to 5089901 5 + TSS region transcription start site region 142391
Tssr142392 17 5090081 to 5090122 41 + TSS region transcription start site region 142392
Cpgi8554 17 5091498 to 5091697 199 CpG island CpG island 8554
Tssr142393 17 5103243 to 5103248 5 + TSS region transcription start site region 142393
Gm15599 17 5110766 to 5112110 1344 - pseudogene predicted gene 15599
Tssr142394 17 5134934 to 5134938 4 + TSS region transcription start site region 142394
Tssr142395 17 5152647 to 5152658 11 + TSS region transcription start site region 142395
Tssr142396 17 5160946 to 5160950 4 + TSS region transcription start site region 142396
Cpgi8555 17 5189663 to 5190103 440 CpG island CpG island 8555
Tssr142397 17 5189899 to 5189917 18 + TSS region transcription start site region 142397
Idd23 17 26182159 to 3924615 -22257544 QTL insulin dependent diabetes susceptibility 23
Lmr7 17 27496965 to 4804477 -22692488 QTL leishmaniasis resistance 7
Mnic1 17 45359340 to 4804477 -40554863 QTL macronutrient intake, carbohydrate 1
Alan1 17 46158776 to 4804477 -41354299 QTL alloantigen response 1
Kdnw3 17 47574740 to 4804477 -42770263 QTL kidney weight 3