Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:36774574-36972833

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
H2-M10.5 17 36772910 to 36776234 3324 + protein coding gene histocompatibility 2, M region locus 10.5
H2-M10.6 17 36812175 to 36815566 3391 + protein coding gene histocompatibility 2, M region locus 10.6
Cpgi9143 17 36836873 to 36837556 683 CpG island CpG island 9143
Tssr144511 17 36837123 to 36837211 88 + TSS region transcription start site region 144511
Trim26 17 36837134 to 36859398 22264 + protein coding gene tripartite motif-containing 26
Gm25973 17 36842226 to 36842352 126 - snoRNA gene predicted gene, 25973
Trim15 17 36860691 to 36867210 6519 - protein coding gene tripartite motif-containing 15
Tssr147978 17 36867103 to 36867110 7 - TSS region transcription start site region 147978
Tssr147979 17 36867116 to 36867159 43 - TSS region transcription start site region 147979
Tssr147980 17 36867202 to 36867253 51 - TSS region transcription start site region 147980
Tssr144512 17 36869513 to 36869529 16 + TSS region transcription start site region 144512
Tssr144513 17 36869532 to 36869541 9 + TSS region transcription start site region 144513
Tssr144514 17 36869546 to 36869565 19 + TSS region transcription start site region 144514
Tssr144515 17 36869567 to 36869581 14 + TSS region transcription start site region 144515
Trim10 17 36869574 to 36877833 8259 + protein coding gene tripartite motif-containing 10
Cpgi9144 17 36870042 to 36870289 247 CpG island CpG island 9144
Tssr144516 17 36870102 to 36870142 40 + TSS region transcription start site region 144516
Gm4276 17 36877954 to 36878479 525 + pseudogene predicted gene 4276
Trim40 17 36881598 to 36890123 8525 - protein coding gene tripartite motif-containing 40
Tssr147981 17 36889664 to 36889675 11 - TSS region transcription start site region 147981
Tssr147982 17 36890034 to 36890050 16 - TSS region transcription start site region 147982
Tssr147983 17 36890133 to 36890161 28 - TSS region transcription start site region 147983
Tssr147984 17 36894028 to 36894035 7 - TSS region transcription start site region 147984
Tssr144517 17 36898110 to 36898129 19 + TSS region transcription start site region 144517
Trim31 17 36898130 to 36910217 12087 + protein coding gene tripartite motif-containing 31
Tssr144518 17 36898215 to 36898226 11 + TSS region transcription start site region 144518
Tssr144519 17 36898319 to 36898339 20 + TSS region transcription start site region 144519
Cpgi9145 17 36920296 to 36920459 163 CpG island CpG island 9145
A830092I05Rik 17 36921894 to 36922618 724 unclassified gene RIKEN cDNA A830092I05 gene
1700031A10Rik 17 36923792 to 36933432 9640 + antisense lncRNA gene RIKEN cDNA 1700031A10 gene
Cpgi9146 17 36942548 to 36943637 1089 CpG island CpG island 9146
Tssr144520 17 36942910 to 36942924 14 + TSS region transcription start site region 144520
Tssr144521 17 36943025 to 36943038 13 + TSS region transcription start site region 144521
Rnf39 17 36943051 to 36947986 4935 + protein coding gene ring finger protein 39
Tssr144522 17 36943273 to 36943322 49 + TSS region transcription start site region 144522
Gm33595 17 36943457 to 36947111 3654 - lncRNA gene predicted gene, 33595
Cpgi9147 17 36946847 to 36947759 912 CpG island CpG island 9147
Ppp1r11 17 36948356 to 36951741 3385 - protein coding gene protein phosphatase 1, regulatory inhibitor subunit 11
Tssr147985 17 36951139 to 36951148 9 - TSS region transcription start site region 147985
Tssr147986 17 36951416 to 36951425 9 - TSS region transcription start site region 147986
Cpgi9148 17 36951482 to 36951799 317 CpG island CpG island 9148
Tssr147987 17 36951586 to 36951601 15 - TSS region transcription start site region 147987
Tssr147988 17 36951604 to 36951632 28 - TSS region transcription start site region 147988
Tssr147989 17 36951636 to 36951718 82 - TSS region transcription start site region 147989
Znrd1 17 36954349 to 36958520 4171 - protein coding gene zinc ribbon domain containing, 1
Cpgi9149 17 36957982 to 36958903 921 CpG island CpG island 9149
Tssr147990 17 36958175 to 36958198 23 - TSS region transcription start site region 147990
Tssr147991 17 36958206 to 36958234 28 - TSS region transcription start site region 147991
Tssr147992 17 36958261 to 36958284 23 - TSS region transcription start site region 147992
Tssr147993 17 36958417 to 36958433 16 - TSS region transcription start site region 147993
Tssr147994 17 36958437 to 36958500 63 - TSS region transcription start site region 147994
Tssr147995 17 36958538 to 36958554 16 - TSS region transcription start site region 147995
Tssr144523 17 36958558 to 36958569 11 + TSS region transcription start site region 144523
Tssr144524 17 36958571 to 36958611 40 + TSS region transcription start site region 144524
Znrd1as 17 36958592 to 36965625 7033 + protein coding gene zinc ribbon domain containing 1, antisense
Tssr144525 17 36958623 to 36958630 7 + TSS region transcription start site region 144525
Tssr144526 17 36958655 to 36958751 96 + TSS region transcription start site region 144526
Tssr144527 17 36963788 to 36963797 9 + TSS region transcription start site region 144527
Tssr144528 17 36963822 to 36963837 15 + TSS region transcription start site region 144528
Gm27735 17 36964357 to 36964432 75 - unclassified non-coding RNA gene predicted gene, 27735
D17Rua6 17 36968936 to 36969106 170 DNA segment DNA segment, Chr 17, Rutgers University 6
H2-M6-ps 17 36969207 to 36971396 2189 - pseudogene histocompatibility 2, M region locus 6, pseudogene
Tssr147996 17 36970609 to 36970620 11 - TSS region transcription start site region 147996
Tssr144529 17 36970725 to 36970739 14 + TSS region transcription start site region 144529
Tssr144530 17 36970802 to 36970835 33 + TSS region transcription start site region 144530