Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:36250425-37032644

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151 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm20546 17 36248821 to 36253679 4858 + lincRNA gene predicted gene 20546
Gm6633 17 36252117 to 36252386 269 - pseudogene predicted gene 6633
Cpgi9139 17 36252276 to 36252607 331 CpG island CpG island 9139
Tssr147967 17 36252487 to 36252503 16 - TSS region transcription start site region 147967
Rpp21 17 36255645 to 36258069 2424 - protein coding gene ribonuclease P 21 subunit
Cpgi9140 17 36257427 to 36257900 473 CpG island CpG island 9140
Tssr147968 17 36257836 to 36257855 19 - TSS region transcription start site region 147968
Tssr147969 17 36257857 to 36257871 14 - TSS region transcription start site region 147969
Trim39 17 36258872 to 36272004 13132 - protein coding gene tripartite motif-containing 39
Tssr147970 17 36263490 to 36263491 1 - TSS region transcription start site region 147970
Cpgi9141 17 36270760 to 36272017 1257 CpG island CpG island 9141
Tssr147971 17 36271089 to 36271102 13 - TSS region transcription start site region 147971
Tssr147972 17 36271115 to 36271145 30 - TSS region transcription start site region 147972
Tssr147973 17 36271354 to 36271365 11 - TSS region transcription start site region 147973
Tssr144510 17 36271432 to 36271483 51 + TSS region transcription start site region 144510
Tssr5115 17 36271799 to 36271813 14 - TSS region transcription start site region 5115
Tssr147974 17 36271829 to 36271857 28 - TSS region transcription start site region 147974
Tssr147975 17 36271877 to 36271921 44 - TSS region transcription start site region 147975
Tssr147976 17 36272244 to 36272248 4 - TSS region transcription start site region 147976
H2-M10.2 17 36284281 to 36286421 2140 - protein coding gene histocompatibility 2, M region locus 10.2
Gm33257 17 36286052 to 36318773 32721 + lncRNA gene predicted gene, 33257
H2-M10.1 17 36322860 to 36326150 3290 - protein coding gene histocompatibility 2, M region locus 10.1
H2-M10.3 17 36365004 to 36368417 3413 - protein coding gene histocompatibility 2, M region locus 10.3
Stk-ps1 17 36397444 to 36398517 1073 - pseudogene serine/threonine kinase, pseudogene 1
H2-M10.5-ps1 17 36407439 to 36409549 2110 - pseudogene histocompatibility 2, M region locus 10.5, pseudogene 1
Lgals1-ps1 17 36435903 to 36436270 367 - pseudogene lectin, galactose binding, soluble 1, pseudogene 1
Rpl9-ps9 17 36444177 to 36444749 572 - pseudogene ribosomal protein L9,pseudogene 9
Obox3-ps8 17 36452294 to 36453253 959 - pseudogene oocyte specific homeobox 3, pseudogene 8
H2-M10.4 17 36458917 to 36462329 3412 - protein coding gene histocompatibility 2, M region locus 10.4
D17Mit125 17 36498157 to 36498299 142 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 125
Gm20452 17 36500360 to 36501581 1221 + pseudogene predicted gene 20452
Gm18809 17 36501027 to 36534495 33468 + pseudogene predicted gene, 18809
Gm20451 17 36507180 to 36508952 1772 + pseudogene predicted gene 20451
Gm20454 17 36534281 to 36534501 220 + pseudogene predicted gene 20454
Gm20453 17 36545888 to 36546113 225 - pseudogene predicted gene 20453
H2-M11 17 36547075 to 36549250 2175 + protein coding gene histocompatibility 2, M region locus 11
Gm8868 17 36558621 to 36561668 3047 + pseudogene predicted gene 8868
Gm20450 17 36597898 to 36598044 146 + pseudogene predicted gene 20450
D17Dcr35 17 36601074 to 36601169 95 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 35
H2-M9 17 36640425 to 36642644 2219 - protein coding gene histocompatibility 2, M region locus 9
Tssr147977 17 36642661 to 36642664 3 - TSS region transcription start site region 147977
Rpl9-ps5 17 36657056 to 36657626 570 + pseudogene ribosomal protein L9, pseudogene 5
H2-M1 17 36670008 to 36672219 2211 - protein coding gene histocompatibility 2, M region locus 1
D17Dcr36 17 36697310 to 36697405 95 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 36
Gm8877 17 36701629 to 36703209 1580 - pseudogene predicted gene 8877
Gm20549 17 36703775 to 36704203 428 + pseudogene predicted gene 20549
Gm20523 17 36705724 to 36706847 1123 - pseudogene predicted gene 20523
Gm20525 17 36723234 to 36723281 47 + pseudogene predicted gene 20525
Gm20526 17 36723948 to 36724275 327 + pseudogene predicted gene 20526
Gm4271 17 36732642 to 36734751 2109 + pseudogene predicted gene 4271
Gm20401 17 36752513 to 36753979 1466 - pseudogene predicted gene 20401
Gm8878 17 36759857 to 36761302 1445 - pseudogene predicted gene 8878
H2-M10.5 17 36772910 to 36776234 3324 + protein coding gene histocompatibility 2, M region locus 10.5
H2-M10.6 17 36812175 to 36815566 3391 + protein coding gene histocompatibility 2, M region locus 10.6
Cpgi9143 17 36836873 to 36837556 683 CpG island CpG island 9143
Tssr144511 17 36837123 to 36837211 88 + TSS region transcription start site region 144511
Trim26 17 36837134 to 36859398 22264 + protein coding gene tripartite motif-containing 26
Gm25973 17 36842226 to 36842352 126 - snoRNA gene predicted gene, 25973
Trim15 17 36860691 to 36867210 6519 - protein coding gene tripartite motif-containing 15
Tssr147978 17 36867103 to 36867110 7 - TSS region transcription start site region 147978
Tssr147979 17 36867116 to 36867159 43 - TSS region transcription start site region 147979
Tssr147980 17 36867202 to 36867253 51 - TSS region transcription start site region 147980
Tssr144512 17 36869513 to 36869529 16 + TSS region transcription start site region 144512
Tssr144513 17 36869532 to 36869541 9 + TSS region transcription start site region 144513
Tssr144514 17 36869546 to 36869565 19 + TSS region transcription start site region 144514
Tssr144515 17 36869567 to 36869581 14 + TSS region transcription start site region 144515
Trim10 17 36869574 to 36877833 8259 + protein coding gene tripartite motif-containing 10
Cpgi9144 17 36870042 to 36870289 247 CpG island CpG island 9144
Tssr144516 17 36870102 to 36870142 40 + TSS region transcription start site region 144516
Gm4276 17 36877954 to 36878479 525 + pseudogene predicted gene 4276
Trim40 17 36881598 to 36890123 8525 - protein coding gene tripartite motif-containing 40
Tssr147981 17 36889664 to 36889675 11 - TSS region transcription start site region 147981
Tssr147982 17 36890034 to 36890050 16 - TSS region transcription start site region 147982
Tssr147983 17 36890133 to 36890161 28 - TSS region transcription start site region 147983
Tssr147984 17 36894028 to 36894035 7 - TSS region transcription start site region 147984
Tssr144517 17 36898110 to 36898129 19 + TSS region transcription start site region 144517
Trim31 17 36898130 to 36910217 12087 + protein coding gene tripartite motif-containing 31
Tssr144518 17 36898215 to 36898226 11 + TSS region transcription start site region 144518
Tssr144519 17 36898319 to 36898339 20 + TSS region transcription start site region 144519
Cpgi9145 17 36920296 to 36920459 163 CpG island CpG island 9145
A830092I05Rik 17 36921894 to 36922618 724 unclassified gene RIKEN cDNA A830092I05 gene
1700031A10Rik 17 36923792 to 36933432 9640 + antisense lncRNA gene RIKEN cDNA 1700031A10 gene
Cpgi9146 17 36942548 to 36943637 1089 CpG island CpG island 9146
Tssr144520 17 36942910 to 36942924 14 + TSS region transcription start site region 144520
Tssr144521 17 36943025 to 36943038 13 + TSS region transcription start site region 144521
Rnf39 17 36943051 to 36947986 4935 + protein coding gene ring finger protein 39
Tssr144522 17 36943273 to 36943322 49 + TSS region transcription start site region 144522
Gm33595 17 36943457 to 36947111 3654 - lncRNA gene predicted gene, 33595
Cpgi9147 17 36946847 to 36947759 912 CpG island CpG island 9147
Ppp1r11 17 36948356 to 36951741 3385 - protein coding gene protein phosphatase 1, regulatory inhibitor subunit 11
Tssr147985 17 36951139 to 36951148 9 - TSS region transcription start site region 147985
Tssr147986 17 36951416 to 36951425 9 - TSS region transcription start site region 147986
Cpgi9148 17 36951482 to 36951799 317 CpG island CpG island 9148
Tssr147987 17 36951586 to 36951601 15 - TSS region transcription start site region 147987
Tssr147988 17 36951604 to 36951632 28 - TSS region transcription start site region 147988
Tssr147989 17 36951636 to 36951718 82 - TSS region transcription start site region 147989
Znrd1 17 36954349 to 36958520 4171 - protein coding gene zinc ribbon domain containing, 1
Cpgi9149 17 36957982 to 36958903 921 CpG island CpG island 9149
Tssr147990 17 36958175 to 36958198 23 - TSS region transcription start site region 147990
Tssr147991 17 36958206 to 36958234 28 - TSS region transcription start site region 147991
Tssr147992 17 36958261 to 36958284 23 - TSS region transcription start site region 147992
Tssr147993 17 36958417 to 36958433 16 - TSS region transcription start site region 147993
Tssr147994 17 36958437 to 36958500 63 - TSS region transcription start site region 147994
Tssr147995 17 36958538 to 36958554 16 - TSS region transcription start site region 147995
Tssr144523 17 36958558 to 36958569 11 + TSS region transcription start site region 144523
Tssr144524 17 36958571 to 36958611 40 + TSS region transcription start site region 144524
Znrd1as 17 36958592 to 36965625 7033 + protein coding gene zinc ribbon domain containing 1, antisense
Tssr144525 17 36958623 to 36958630 7 + TSS region transcription start site region 144525
Tssr144526 17 36958655 to 36958751 96 + TSS region transcription start site region 144526
Tssr144527 17 36963788 to 36963797 9 + TSS region transcription start site region 144527
Tssr144528 17 36963822 to 36963837 15 + TSS region transcription start site region 144528
Gm27735 17 36964357 to 36964432 75 - unclassified non-coding RNA gene predicted gene, 27735
D17Rua6 17 36968936 to 36969106 170 DNA segment DNA segment, Chr 17, Rutgers University 6
H2-M6-ps 17 36969207 to 36971396 2189 - pseudogene histocompatibility 2, M region locus 6, pseudogene
Tssr147996 17 36970609 to 36970620 11 - TSS region transcription start site region 147996
Tssr144529 17 36970725 to 36970739 14 + TSS region transcription start site region 144529
Tssr144530 17 36970802 to 36970835 33 + TSS region transcription start site region 144530
Tssr147997 17 36972918 to 36972932 14 - TSS region transcription start site region 147997
Tssr147998 17 36973257 to 36973273 16 - TSS region transcription start site region 147998
Tssr144531 17 36973585 to 36973634 49 + TSS region transcription start site region 144531
Tssr144532 17 36973683 to 36973694 11 + TSS region transcription start site region 144532
2410137M14Rik 17 36977701 to 36981237 3536 - protein coding gene RIKEN cDNA 2410137M14 gene
D17Rua5 17 36978240 to 36978390 150 DNA segment DNA segment, Chr 17, Rutgers University 5
H2-M4-ps 17 36980633 to 36980914 281 - pseudogene histocompatibility 2, M region locus 4, pseudogene
Tssr147999 17 36981221 to 36981234 13 - TSS region transcription start site region 147999
H2-M5 17 36986855 to 36989504 2649 - protein coding gene histocompatibility 2, M region locus 5
Cpgi9150 17 36988477 to 36988927 450 CpG island CpG island 9150
Tssr148000 17 36988574 to 36988587 13 - TSS region transcription start site region 148000
Tssr148001 17 36988731 to 36988743 12 - TSS region transcription start site region 148001
Tssr148002 17 36988759 to 36988778 19 - TSS region transcription start site region 148002
Tssr148003 17 36989528 to 36989536 8 - TSS region transcription start site region 148003
Tssr144533 17 36994309 to 36994320 11 + TSS region transcription start site region 144533
Tssr148004 17 36995492 to 36995527 35 - TSS region transcription start site region 148004
Zfp57 17 37001163 to 37010635 9472 + protein coding gene zinc finger protein 57
Cpgi9151 17 37002444 to 37003148 704 CpG island CpG island 9151
Tssr144534 17 37002487 to 37002499 12 + TSS region transcription start site region 144534
Tssr144535 17 37002510 to 37002524 14 + TSS region transcription start site region 144535
Tssr144536 17 37002527 to 37002569 42 + TSS region transcription start site region 144536
Tssr144537 17 37002574 to 37002586 12 + TSS region transcription start site region 144537
Tssr144538 17 37002610 to 37002617 7 + TSS region transcription start site region 144538
Tssr144539 17 37003683 to 37003686 3 + TSS region transcription start site region 144539
Tssr144540 17 37009885 to 37009900 15 + TSS region transcription start site region 144540
Tssr144541 17 37009967 to 37009968 1 + TSS region transcription start site region 144541
Mog 17 37010743 to 37023398 12655 - protein coding gene myelin oligodendrocyte glycoprotein
Gm22388 17 37015343 to 37015590 247 + unclassified non-coding RNA gene predicted gene, 22388
Tssr148005 17 37023217 to 37023230 13 - TSS region transcription start site region 148005
Tssr148006 17 37023238 to 37023320 82 - TSS region transcription start site region 148006
Tssr148007 17 37023330 to 37023341 11 - TSS region transcription start site region 148007
Tssr148008 17 37023349 to 37023371 22 - TSS region transcription start site region 148008
Cpgi9152 17 37028601 to 37028829 228 CpG island CpG island 9152
Gm33802 17 37031659 to 37045965 14306 - lncRNA gene predicted gene, 33802