Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:36084281-36984501

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi9125 17 36083280 to 36084316 1036 CpG island CpG island 9125
Gm20530 17 36094181 to 36094763 582 + pseudogene predicted gene 20530
Gm8815 17 36094968 to 36096805 1837 - pseudogene predicted gene 8815
H2-T-ps 17 36109234 to 36111658 2424 - pseudogene histocompatibility 2, T region locus, pseudogene
Cpgi9126 17 36111135 to 36111694 559 CpG island CpG island 9126
Tssr147953 17 36111674 to 36111696 22 - TSS region transcription start site region 147953
H2-T10 17 36115871 to 36121444 5573 - polymorphic pseudogene histocompatibility 2, T region locus 10
BC023719 17 36116242 to 36116860 618 + antisense lncRNA gene cDNA sequence BC023719
Tssr144505 17 36121666 to 36121698 32 + TSS region transcription start site region 144505
Gm19684 17 36121678 to 36129692 8014 + protein coding gene predicted gene, 19684
Tssr144506 17 36121757 to 36121763 6 + TSS region transcription start site region 144506
Gm7030 17 36127609 to 36129425 1816 - protein coding gene predicted gene 7030
Tssr147954 17 36129435 to 36129463 28 - TSS region transcription start site region 147954
Tssr147955 17 36129505 to 36129508 3 - TSS region transcription start site region 147955
Gm9574 17 36137188 to 36139105 1917 - pseudogene predicted gene 9574
Gm10499 17 36141758 to 36145923 4165 - pseudogene predicted gene 10499
Tssr144507 17 36143168 to 36143187 19 + TSS region transcription start site region 144507
Cpgi9127 17 36144800 to 36145983 1183 CpG island CpG island 9127
2410017I17Rik 17 36145018 to 36162374 17356 + lincRNA gene RIKEN cDNA 2410017I17 gene
Tssr147956 17 36145699 to 36145723 24 - TSS region transcription start site region 147956
Tssr147957 17 36145761 to 36145769 8 - TSS region transcription start site region 147957
Tssr147958 17 36145927 to 36145938 11 - TSS region transcription start site region 147958
Tssr147959 17 36145939 to 36145956 17 - TSS region transcription start site region 147959
Gm17782 17 36156531 to 36162079 5548 - pseudogene predicted gene, 17782
Cpgi9128 17 36157842 to 36158219 377 CpG island CpG island 9128
Gm6659 17 36157988 to 36158534 546 + pseudogene predicted gene 6659
Cpgi9129 17 36161256 to 36162072 816 CpG island CpG island 9129
Gm8909 17 36164443 to 36168537 4094 - protein coding gene predicted gene 8909
Cpgi9130 17 36167313 to 36168571 1258 CpG island CpG island 9130
Tssr144508 17 36167606 to 36167634 28 + TSS region transcription start site region 144508
Tssr147960 17 36167647 to 36167682 35 - TSS region transcription start site region 147960
Tssr147961 17 36167687 to 36167704 17 - TSS region transcription start site region 147961
Gm20478 17 36167982 to 36171805 3823 + antisense lncRNA gene predicted gene 20478
Tssr147962 17 36168513 to 36168528 15 - TSS region transcription start site region 147962
Tssr147963 17 36168532 to 36168546 14 - TSS region transcription start site region 147963
Cpgi9131 17 36178955 to 36179344 389 CpG island CpG island 9131
Gm6623 17 36179114 to 36179657 543 + pseudogene predicted gene 6623
Gm20495 17 36182196 to 36182430 234 - pseudogene predicted gene 20495
H2-T3 17 36185571 to 36190151 4580 - protein coding gene histocompatibility 2, T region locus 3
Cpgi9132 17 36189640 to 36189856 216 CpG island CpG island 9132
Tssr147964 17 36190121 to 36190158 37 - TSS region transcription start site region 147964
Tssr5114 17 36190220 to 36190262 42 - TSS region transcription start site region 5114
Tssr144509 17 36191435 to 36191455 20 + TSS region transcription start site region 144509
Gm4246 17 36194596 to 36194811 215 - pseudogene predicted gene 4246
Gm20447 17 36197570 to 36198513 943 - pseudogene predicted gene 20447
Gm8835 17 36201890 to 36203383 1493 - pseudogene predicted gene 8835
Cpgi9133 17 36205376 to 36206360 984 CpG island CpG island 9133
Gm5682 17 36210276 to 36211184 908 - pseudogene predicted gene 5682
Gm20392 17 36213417 to 36216412 2995 - pseudogene predicted gene 20392
Cpgi9134 17 36215483 to 36216466 983 CpG island CpG island 9134
D17Mit47 17 36216856 to 36217095 239 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 47
Cpgi9135 17 36225111 to 36225352 241 CpG island CpG island 9135
Gm10074 17 36226023 to 36226271 248 + pseudogene predicted gene 10074
Gm20545 17 36226815 to 36227024 209 - pseudogene predicted gene 20545
Gm29402 17 36228925 to 36228964 39 + pseudogene predicted gene 29402
Gm18604 17 36229474 to 36230020 546 + pseudogene predicted gene, 18604
Cpgi9136 17 36231116 to 36231861 745 CpG island CpG island 9136
Tssr147965 17 36231307 to 36231325 18 - TSS region transcription start site region 147965
Tssr147966 17 36231568 to 36231586 18 - TSS region transcription start site region 147966
Gm20391 17 36237254 to 36237359 105 - pseudogene predicted gene 20391
Cpgi9137 17 36237394 to 36237859 465 CpG island CpG island 9137
Gm22453 17 36241789 to 36242106 317 - unclassified non-coding RNA gene predicted gene, 22453
Gm4252 17 36248636 to 36248948 312 - pseudogene predicted gene 4252
Gm20546 17 36248821 to 36253679 4858 + lincRNA gene predicted gene 20546
Cpgi9138 17 36248863 to 36249219 356 CpG island CpG island 9138
Gm6633 17 36252117 to 36252386 269 - pseudogene predicted gene 6633
Cpgi9139 17 36252276 to 36252607 331 CpG island CpG island 9139
Tssr147967 17 36252487 to 36252503 16 - TSS region transcription start site region 147967
Rpp21 17 36255645 to 36258069 2424 - protein coding gene ribonuclease P 21 subunit
Cpgi9140 17 36257427 to 36257900 473 CpG island CpG island 9140
Tssr147968 17 36257836 to 36257855 19 - TSS region transcription start site region 147968
Tssr147969 17 36257857 to 36257871 14 - TSS region transcription start site region 147969
Trim39 17 36258872 to 36272004 13132 - protein coding gene tripartite motif-containing 39
Tssr147970 17 36263490 to 36263491 1 - TSS region transcription start site region 147970
Cpgi9141 17 36270760 to 36272017 1257 CpG island CpG island 9141
Tssr147971 17 36271089 to 36271102 13 - TSS region transcription start site region 147971
Tssr147972 17 36271115 to 36271145 30 - TSS region transcription start site region 147972
Tssr147973 17 36271354 to 36271365 11 - TSS region transcription start site region 147973
Tssr144510 17 36271432 to 36271483 51 + TSS region transcription start site region 144510
Tssr5115 17 36271799 to 36271813 14 - TSS region transcription start site region 5115
Tssr147974 17 36271829 to 36271857 28 - TSS region transcription start site region 147974
Tssr147975 17 36271877 to 36271921 44 - TSS region transcription start site region 147975
Tssr147976 17 36272244 to 36272248 4 - TSS region transcription start site region 147976
H2-M10.2 17 36284281 to 36286421 2140 - protein coding gene histocompatibility 2, M region locus 10.2
Gm33257 17 36286052 to 36318773 32721 + lncRNA gene predicted gene, 33257
H2-M10.1 17 36322860 to 36326150 3290 - protein coding gene histocompatibility 2, M region locus 10.1
H2-M10.3 17 36365004 to 36368417 3413 - protein coding gene histocompatibility 2, M region locus 10.3
Stk-ps1 17 36397444 to 36398517 1073 - pseudogene serine/threonine kinase, pseudogene 1
H2-M10.5-ps1 17 36407439 to 36409549 2110 - pseudogene histocompatibility 2, M region locus 10.5, pseudogene 1
Lgals1-ps1 17 36435903 to 36436270 367 - pseudogene lectin, galactose binding, soluble 1, pseudogene 1
Rpl9-ps9 17 36444177 to 36444749 572 - pseudogene ribosomal protein L9,pseudogene 9
Obox3-ps8 17 36452294 to 36453253 959 - pseudogene oocyte specific homeobox 3, pseudogene 8
H2-M10.4 17 36458917 to 36462329 3412 - protein coding gene histocompatibility 2, M region locus 10.4
D17Mit125 17 36498157 to 36498299 142 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 125
Gm20452 17 36500360 to 36501581 1221 + pseudogene predicted gene 20452
Gm18809 17 36501027 to 36534495 33468 + pseudogene predicted gene, 18809
Gm20451 17 36507180 to 36508952 1772 + pseudogene predicted gene 20451
Gm20454 17 36534281 to 36534501 220 + pseudogene predicted gene 20454
Gm20453 17 36545888 to 36546113 225 - pseudogene predicted gene 20453
H2-M11 17 36547075 to 36549250 2175 + protein coding gene histocompatibility 2, M region locus 11
Gm8868 17 36558621 to 36561668 3047 + pseudogene predicted gene 8868
Gm20450 17 36597898 to 36598044 146 + pseudogene predicted gene 20450
D17Dcr35 17 36601074 to 36601169 95 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 35
H2-M9 17 36640425 to 36642644 2219 - protein coding gene histocompatibility 2, M region locus 9
Tssr147977 17 36642661 to 36642664 3 - TSS region transcription start site region 147977
Rpl9-ps5 17 36657056 to 36657626 570 + pseudogene ribosomal protein L9, pseudogene 5
H2-M1 17 36670008 to 36672219 2211 - protein coding gene histocompatibility 2, M region locus 1
D17Dcr36 17 36697310 to 36697405 95 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 36
Gm8877 17 36701629 to 36703209 1580 - pseudogene predicted gene 8877
Gm20549 17 36703775 to 36704203 428 + pseudogene predicted gene 20549
Gm20523 17 36705724 to 36706847 1123 - pseudogene predicted gene 20523
Gm20525 17 36723234 to 36723281 47 + pseudogene predicted gene 20525
Gm20526 17 36723948 to 36724275 327 + pseudogene predicted gene 20526
Gm4271 17 36732642 to 36734751 2109 + pseudogene predicted gene 4271
Gm20401 17 36752513 to 36753979 1466 - pseudogene predicted gene 20401
Gm8878 17 36759857 to 36761302 1445 - pseudogene predicted gene 8878
H2-M10.5 17 36772910 to 36776234 3324 + protein coding gene histocompatibility 2, M region locus 10.5
H2-M10.6 17 36812175 to 36815566 3391 + protein coding gene histocompatibility 2, M region locus 10.6
Cpgi9143 17 36836873 to 36837556 683 CpG island CpG island 9143
Tssr144511 17 36837123 to 36837211 88 + TSS region transcription start site region 144511
Trim26 17 36837134 to 36859398 22264 + protein coding gene tripartite motif-containing 26
Gm25973 17 36842226 to 36842352 126 - snoRNA gene predicted gene, 25973
Trim15 17 36860691 to 36867210 6519 - protein coding gene tripartite motif-containing 15
Tssr147978 17 36867103 to 36867110 7 - TSS region transcription start site region 147978
Tssr147979 17 36867116 to 36867159 43 - TSS region transcription start site region 147979
Tssr147980 17 36867202 to 36867253 51 - TSS region transcription start site region 147980
Tssr144512 17 36869513 to 36869529 16 + TSS region transcription start site region 144512
Tssr144513 17 36869532 to 36869541 9 + TSS region transcription start site region 144513
Tssr144514 17 36869546 to 36869565 19 + TSS region transcription start site region 144514
Tssr144515 17 36869567 to 36869581 14 + TSS region transcription start site region 144515
Trim10 17 36869574 to 36877833 8259 + protein coding gene tripartite motif-containing 10
Cpgi9144 17 36870042 to 36870289 247 CpG island CpG island 9144
Tssr144516 17 36870102 to 36870142 40 + TSS region transcription start site region 144516
Gm4276 17 36877954 to 36878479 525 + pseudogene predicted gene 4276
Trim40 17 36881598 to 36890123 8525 - protein coding gene tripartite motif-containing 40
Tssr147981 17 36889664 to 36889675 11 - TSS region transcription start site region 147981
Tssr147982 17 36890034 to 36890050 16 - TSS region transcription start site region 147982
Tssr147983 17 36890133 to 36890161 28 - TSS region transcription start site region 147983
Tssr147984 17 36894028 to 36894035 7 - TSS region transcription start site region 147984
Tssr144517 17 36898110 to 36898129 19 + TSS region transcription start site region 144517
Trim31 17 36898130 to 36910217 12087 + protein coding gene tripartite motif-containing 31
Tssr144518 17 36898215 to 36898226 11 + TSS region transcription start site region 144518
Tssr144519 17 36898319 to 36898339 20 + TSS region transcription start site region 144519
Cpgi9145 17 36920296 to 36920459 163 CpG island CpG island 9145
A830092I05Rik 17 36921894 to 36922618 724 unclassified gene RIKEN cDNA A830092I05 gene
1700031A10Rik 17 36923792 to 36933432 9640 + antisense lncRNA gene RIKEN cDNA 1700031A10 gene
Cpgi9146 17 36942548 to 36943637 1089 CpG island CpG island 9146
Tssr144520 17 36942910 to 36942924 14 + TSS region transcription start site region 144520
Tssr144521 17 36943025 to 36943038 13 + TSS region transcription start site region 144521
Rnf39 17 36943051 to 36947986 4935 + protein coding gene ring finger protein 39
Tssr144522 17 36943273 to 36943322 49 + TSS region transcription start site region 144522
Gm33595 17 36943457 to 36947111 3654 - lncRNA gene predicted gene, 33595
Cpgi9147 17 36946847 to 36947759 912 CpG island CpG island 9147
Ppp1r11 17 36948356 to 36951741 3385 - protein coding gene protein phosphatase 1, regulatory inhibitor subunit 11
Tssr147985 17 36951139 to 36951148 9 - TSS region transcription start site region 147985
Tssr147986 17 36951416 to 36951425 9 - TSS region transcription start site region 147986
Cpgi9148 17 36951482 to 36951799 317 CpG island CpG island 9148
Tssr147987 17 36951586 to 36951601 15 - TSS region transcription start site region 147987
Tssr147988 17 36951604 to 36951632 28 - TSS region transcription start site region 147988
Tssr147989 17 36951636 to 36951718 82 - TSS region transcription start site region 147989
Znrd1 17 36954349 to 36958520 4171 - protein coding gene zinc ribbon domain containing, 1
Cpgi9149 17 36957982 to 36958903 921 CpG island CpG island 9149
Tssr147990 17 36958175 to 36958198 23 - TSS region transcription start site region 147990
Tssr147991 17 36958206 to 36958234 28 - TSS region transcription start site region 147991
Tssr147992 17 36958261 to 36958284 23 - TSS region transcription start site region 147992
Tssr147993 17 36958417 to 36958433 16 - TSS region transcription start site region 147993
Tssr147994 17 36958437 to 36958500 63 - TSS region transcription start site region 147994
Tssr147995 17 36958538 to 36958554 16 - TSS region transcription start site region 147995
Tssr144523 17 36958558 to 36958569 11 + TSS region transcription start site region 144523
Tssr144524 17 36958571 to 36958611 40 + TSS region transcription start site region 144524
Znrd1as 17 36958592 to 36965625 7033 + protein coding gene zinc ribbon domain containing 1, antisense
Tssr144525 17 36958623 to 36958630 7 + TSS region transcription start site region 144525
Tssr144526 17 36958655 to 36958751 96 + TSS region transcription start site region 144526
Tssr144527 17 36963788 to 36963797 9 + TSS region transcription start site region 144527
Tssr144528 17 36963822 to 36963837 15 + TSS region transcription start site region 144528
Gm27735 17 36964357 to 36964432 75 - unclassified non-coding RNA gene predicted gene, 27735
D17Rua6 17 36968936 to 36969106 170 DNA segment DNA segment, Chr 17, Rutgers University 6
H2-M6-ps 17 36969207 to 36971396 2189 - pseudogene histocompatibility 2, M region locus 6, pseudogene
Tssr147996 17 36970609 to 36970620 11 - TSS region transcription start site region 147996
Tssr144529 17 36970725 to 36970739 14 + TSS region transcription start site region 144529
Tssr144530 17 36970802 to 36970835 33 + TSS region transcription start site region 144530
Tssr147997 17 36972918 to 36972932 14 - TSS region transcription start site region 147997
Tssr147998 17 36973257 to 36973273 16 - TSS region transcription start site region 147998
Tssr144531 17 36973585 to 36973634 49 + TSS region transcription start site region 144531
Tssr144532 17 36973683 to 36973694 11 + TSS region transcription start site region 144532
2410137M14Rik 17 36977701 to 36981237 3536 - protein coding gene RIKEN cDNA 2410137M14 gene
D17Rua5 17 36978240 to 36978390 150 DNA segment DNA segment, Chr 17, Rutgers University 5
H2-M4-ps 17 36980633 to 36980914 281 - pseudogene histocompatibility 2, M region locus 4, pseudogene
Tssr147999 17 36981221 to 36981234 13 - TSS region transcription start site region 147999