Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:35989177-36899749

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185 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gnl1 17 35979955 to 35989462 9507 + protein coding gene guanine nucleotide binding protein-like 1
Gm20508 17 35991867 to 35993738 1871 + lincRNA gene predicted gene 20508
Cpgi9122 17 35993740 to 35993967 227 CpG island CpG island 9122
Cpgi9123 17 35994375 to 35994598 223 CpG island CpG island 9123
Tssr144493 17 35994493 to 35994539 46 + TSS region transcription start site region 144493
A930015D03Rik 17 35994504 to 36038174 43670 + antisense lncRNA gene RIKEN cDNA A930015D03 gene
Tssr144494 17 35998014 to 35998022 8 + TSS region transcription start site region 144494
Tssr144495 17 35998368 to 35998372 4 + TSS region transcription start site region 144495
Tssr144496 17 36000662 to 36000681 19 + TSS region transcription start site region 144496
H2-T24 17 36005695 to 36020560 14865 - protein coding gene histocompatibility 2, T region locus 24
Tssr147939 17 36006324 to 36006341 17 - TSS region transcription start site region 147939
Tssr147940 17 36006409 to 36006435 26 - TSS region transcription start site region 147940
Tssr147941 17 36006574 to 36006593 19 - TSS region transcription start site region 147941
Tssr147942 17 36006627 to 36006652 25 - TSS region transcription start site region 147942
Tssr147943 17 36015586 to 36015602 16 - TSS region transcription start site region 147943
Tssr147944 17 36020493 to 36020509 16 - TSS region transcription start site region 147944
Tssr147945 17 36020528 to 36020570 42 - TSS region transcription start site region 147945
Tssr144497 17 36020979 to 36021001 22 + TSS region transcription start site region 144497
Tssr144498 17 36023819 to 36023851 32 + TSS region transcription start site region 144498
Tssr144499 17 36023852 to 36023875 23 + TSS region transcription start site region 144499
H2-T23 17 36029977 to 36032701 2724 - protein coding gene histocompatibility 2, T region locus 23
Tssr147946 17 36030620 to 36030653 33 - TSS region transcription start site region 147946
Cpgi9124 17 36031548 to 36032734 1186 CpG island CpG island 9124
Tssr147947 17 36032516 to 36032562 46 - TSS region transcription start site region 147947
Tssr147948 17 36032563 to 36032575 12 - TSS region transcription start site region 147948
Tssr5112 17 36032668 to 36032679 11 - TSS region transcription start site region 5112
Tssr147949 17 36032682 to 36032742 60 - TSS region transcription start site region 147949
H2-T22 17 36038407 to 36042743 4336 - protein coding gene histocompatibility 2, T region locus 22
Tssr147950 17 36042721 to 36042750 29 - TSS region transcription start site region 147950
Tssr144500 17 36042956 to 36042984 28 + TSS region transcription start site region 144500
Gm6034 17 36042961 to 36058645 15684 + protein coding gene predicted gene 6034
Tssr144501 17 36042992 to 36043012 20 + TSS region transcription start site region 144501
Tssr144502 17 36043026 to 36043027 1 + TSS region transcription start site region 144502
Tssr144503 17 36043047 to 36043056 9 + TSS region transcription start site region 144503
Tssr144504 17 36043823 to 36043839 16 + TSS region transcription start site region 144504
Tssr147951 17 36046561 to 36046570 9 - TSS region transcription start site region 147951
Gm11127 17 36055816 to 36058371 2555 - protein coding gene predicted gene 11127
Gm20950 17 36056315 to 36056838 523 - pseudogene predicted gene, 20950
Tssr5113 17 36058451 to 36058457 6 - TSS region transcription start site region 5113
Gm8810 17 36066108 to 36067753 1645 - pseudogene predicted gene 8810
H2-Bl 17 36080189 to 36084249 4060 - polymorphic pseudogene histocompatibility 2, blastocyst
Cpgi9125 17 36083280 to 36084316 1036 CpG island CpG island 9125
Tssr147952 17 36084232 to 36084255 23 - TSS region transcription start site region 147952
Gm20530 17 36094181 to 36094763 582 + pseudogene predicted gene 20530
Gm8815 17 36094968 to 36096805 1837 - pseudogene predicted gene 8815
H2-T-ps 17 36109234 to 36111658 2424 - pseudogene histocompatibility 2, T region locus, pseudogene
Cpgi9126 17 36111135 to 36111694 559 CpG island CpG island 9126
Tssr147953 17 36111674 to 36111696 22 - TSS region transcription start site region 147953
H2-T10 17 36115871 to 36121444 5573 - polymorphic pseudogene histocompatibility 2, T region locus 10
BC023719 17 36116242 to 36116860 618 + antisense lncRNA gene cDNA sequence BC023719
Tssr144505 17 36121666 to 36121698 32 + TSS region transcription start site region 144505
Gm19684 17 36121678 to 36129692 8014 + protein coding gene predicted gene, 19684
Tssr144506 17 36121757 to 36121763 6 + TSS region transcription start site region 144506
Gm7030 17 36127609 to 36129425 1816 - protein coding gene predicted gene 7030
Tssr147954 17 36129435 to 36129463 28 - TSS region transcription start site region 147954
Tssr147955 17 36129505 to 36129508 3 - TSS region transcription start site region 147955
Gm9574 17 36137188 to 36139105 1917 - pseudogene predicted gene 9574
Gm10499 17 36141758 to 36145923 4165 - pseudogene predicted gene 10499
Tssr144507 17 36143168 to 36143187 19 + TSS region transcription start site region 144507
Cpgi9127 17 36144800 to 36145983 1183 CpG island CpG island 9127
2410017I17Rik 17 36145018 to 36162374 17356 + lincRNA gene RIKEN cDNA 2410017I17 gene
Tssr147956 17 36145699 to 36145723 24 - TSS region transcription start site region 147956
Tssr147957 17 36145761 to 36145769 8 - TSS region transcription start site region 147957
Tssr147958 17 36145927 to 36145938 11 - TSS region transcription start site region 147958
Tssr147959 17 36145939 to 36145956 17 - TSS region transcription start site region 147959
Gm17782 17 36156531 to 36162079 5548 - pseudogene predicted gene, 17782
Cpgi9128 17 36157842 to 36158219 377 CpG island CpG island 9128
Gm6659 17 36157988 to 36158534 546 + pseudogene predicted gene 6659
Cpgi9129 17 36161256 to 36162072 816 CpG island CpG island 9129
Gm8909 17 36164443 to 36168537 4094 - protein coding gene predicted gene 8909
Cpgi9130 17 36167313 to 36168571 1258 CpG island CpG island 9130
Tssr144508 17 36167606 to 36167634 28 + TSS region transcription start site region 144508
Tssr147960 17 36167647 to 36167682 35 - TSS region transcription start site region 147960
Tssr147961 17 36167687 to 36167704 17 - TSS region transcription start site region 147961
Gm20478 17 36167982 to 36171805 3823 + antisense lncRNA gene predicted gene 20478
Tssr147962 17 36168513 to 36168528 15 - TSS region transcription start site region 147962
Tssr147963 17 36168532 to 36168546 14 - TSS region transcription start site region 147963
Cpgi9131 17 36178955 to 36179344 389 CpG island CpG island 9131
Gm6623 17 36179114 to 36179657 543 + pseudogene predicted gene 6623
Gm20495 17 36182196 to 36182430 234 - pseudogene predicted gene 20495
H2-T3 17 36185571 to 36190151 4580 - protein coding gene histocompatibility 2, T region locus 3
Cpgi9132 17 36189640 to 36189856 216 CpG island CpG island 9132
Tssr147964 17 36190121 to 36190158 37 - TSS region transcription start site region 147964
Tssr5114 17 36190220 to 36190262 42 - TSS region transcription start site region 5114
Tssr144509 17 36191435 to 36191455 20 + TSS region transcription start site region 144509
Gm4246 17 36194596 to 36194811 215 - pseudogene predicted gene 4246
Gm20447 17 36197570 to 36198513 943 - pseudogene predicted gene 20447
Gm8835 17 36201890 to 36203383 1493 - pseudogene predicted gene 8835
Cpgi9133 17 36205376 to 36206360 984 CpG island CpG island 9133
Gm5682 17 36210276 to 36211184 908 - pseudogene predicted gene 5682
Gm20392 17 36213417 to 36216412 2995 - pseudogene predicted gene 20392
Cpgi9134 17 36215483 to 36216466 983 CpG island CpG island 9134
D17Mit47 17 36216856 to 36217095 239 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 47
Cpgi9135 17 36225111 to 36225352 241 CpG island CpG island 9135
Gm10074 17 36226023 to 36226271 248 + pseudogene predicted gene 10074
Gm20545 17 36226815 to 36227024 209 - pseudogene predicted gene 20545
Gm29402 17 36228925 to 36228964 39 + pseudogene predicted gene 29402
Gm18604 17 36229474 to 36230020 546 + pseudogene predicted gene, 18604
Cpgi9136 17 36231116 to 36231861 745 CpG island CpG island 9136
Tssr147965 17 36231307 to 36231325 18 - TSS region transcription start site region 147965
Tssr147966 17 36231568 to 36231586 18 - TSS region transcription start site region 147966
Gm20391 17 36237254 to 36237359 105 - pseudogene predicted gene 20391
Cpgi9137 17 36237394 to 36237859 465 CpG island CpG island 9137
Gm22453 17 36241789 to 36242106 317 - unclassified non-coding RNA gene predicted gene, 22453
Gm4252 17 36248636 to 36248948 312 - pseudogene predicted gene 4252
Gm20546 17 36248821 to 36253679 4858 + lincRNA gene predicted gene 20546
Cpgi9138 17 36248863 to 36249219 356 CpG island CpG island 9138
Gm6633 17 36252117 to 36252386 269 - pseudogene predicted gene 6633
Cpgi9139 17 36252276 to 36252607 331 CpG island CpG island 9139
Tssr147967 17 36252487 to 36252503 16 - TSS region transcription start site region 147967
Rpp21 17 36255645 to 36258069 2424 - protein coding gene ribonuclease P 21 subunit
Cpgi9140 17 36257427 to 36257900 473 CpG island CpG island 9140
Tssr147968 17 36257836 to 36257855 19 - TSS region transcription start site region 147968
Tssr147969 17 36257857 to 36257871 14 - TSS region transcription start site region 147969
Trim39 17 36258872 to 36272004 13132 - protein coding gene tripartite motif-containing 39
Tssr147970 17 36263490 to 36263491 1 - TSS region transcription start site region 147970
Cpgi9141 17 36270760 to 36272017 1257 CpG island CpG island 9141
Tssr147971 17 36271089 to 36271102 13 - TSS region transcription start site region 147971
Tssr147972 17 36271115 to 36271145 30 - TSS region transcription start site region 147972
Tssr147973 17 36271354 to 36271365 11 - TSS region transcription start site region 147973
Tssr144510 17 36271432 to 36271483 51 + TSS region transcription start site region 144510
Tssr5115 17 36271799 to 36271813 14 - TSS region transcription start site region 5115
Tssr147974 17 36271829 to 36271857 28 - TSS region transcription start site region 147974
Tssr147975 17 36271877 to 36271921 44 - TSS region transcription start site region 147975
Tssr147976 17 36272244 to 36272248 4 - TSS region transcription start site region 147976
H2-M10.2 17 36284281 to 36286421 2140 - protein coding gene histocompatibility 2, M region locus 10.2
Gm33257 17 36286052 to 36318773 32721 + lncRNA gene predicted gene, 33257
H2-M10.1 17 36322860 to 36326150 3290 - protein coding gene histocompatibility 2, M region locus 10.1
H2-M10.3 17 36365004 to 36368417 3413 - protein coding gene histocompatibility 2, M region locus 10.3
Stk-ps1 17 36397444 to 36398517 1073 - pseudogene serine/threonine kinase, pseudogene 1
H2-M10.5-ps1 17 36407439 to 36409549 2110 - pseudogene histocompatibility 2, M region locus 10.5, pseudogene 1
Lgals1-ps1 17 36435903 to 36436270 367 - pseudogene lectin, galactose binding, soluble 1, pseudogene 1
Rpl9-ps9 17 36444177 to 36444749 572 - pseudogene ribosomal protein L9,pseudogene 9
Obox3-ps8 17 36452294 to 36453253 959 - pseudogene oocyte specific homeobox 3, pseudogene 8
H2-M10.4 17 36458917 to 36462329 3412 - protein coding gene histocompatibility 2, M region locus 10.4
D17Mit125 17 36498157 to 36498299 142 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 125
Gm20452 17 36500360 to 36501581 1221 + pseudogene predicted gene 20452
Gm18809 17 36501027 to 36534495 33468 + pseudogene predicted gene, 18809
Gm20451 17 36507180 to 36508952 1772 + pseudogene predicted gene 20451
Gm20454 17 36534281 to 36534501 220 + pseudogene predicted gene 20454
Gm20453 17 36545888 to 36546113 225 - pseudogene predicted gene 20453
H2-M11 17 36547075 to 36549250 2175 + protein coding gene histocompatibility 2, M region locus 11
Gm8868 17 36558621 to 36561668 3047 + pseudogene predicted gene 8868
Gm20450 17 36597898 to 36598044 146 + pseudogene predicted gene 20450
D17Dcr35 17 36601074 to 36601169 95 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 35
H2-M9 17 36640425 to 36642644 2219 - protein coding gene histocompatibility 2, M region locus 9
Tssr147977 17 36642661 to 36642664 3 - TSS region transcription start site region 147977
Rpl9-ps5 17 36657056 to 36657626 570 + pseudogene ribosomal protein L9, pseudogene 5
H2-M1 17 36670008 to 36672219 2211 - protein coding gene histocompatibility 2, M region locus 1
D17Dcr36 17 36697310 to 36697405 95 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 36
Gm8877 17 36701629 to 36703209 1580 - pseudogene predicted gene 8877
Gm20549 17 36703775 to 36704203 428 + pseudogene predicted gene 20549
Gm20523 17 36705724 to 36706847 1123 - pseudogene predicted gene 20523
Gm20525 17 36723234 to 36723281 47 + pseudogene predicted gene 20525
Gm20526 17 36723948 to 36724275 327 + pseudogene predicted gene 20526
Gm4271 17 36732642 to 36734751 2109 + pseudogene predicted gene 4271
Gm20401 17 36752513 to 36753979 1466 - pseudogene predicted gene 20401
Gm8878 17 36759857 to 36761302 1445 - pseudogene predicted gene 8878
H2-M10.5 17 36772910 to 36776234 3324 + protein coding gene histocompatibility 2, M region locus 10.5
H2-M10.6 17 36812175 to 36815566 3391 + protein coding gene histocompatibility 2, M region locus 10.6
Cpgi9143 17 36836873 to 36837556 683 CpG island CpG island 9143
Tssr144511 17 36837123 to 36837211 88 + TSS region transcription start site region 144511
Trim26 17 36837134 to 36859398 22264 + protein coding gene tripartite motif-containing 26
Gm25973 17 36842226 to 36842352 126 - snoRNA gene predicted gene, 25973
Trim15 17 36860691 to 36867210 6519 - protein coding gene tripartite motif-containing 15
Tssr147978 17 36867103 to 36867110 7 - TSS region transcription start site region 147978
Tssr147979 17 36867116 to 36867159 43 - TSS region transcription start site region 147979
Tssr147980 17 36867202 to 36867253 51 - TSS region transcription start site region 147980
Tssr144512 17 36869513 to 36869529 16 + TSS region transcription start site region 144512
Tssr144513 17 36869532 to 36869541 9 + TSS region transcription start site region 144513
Tssr144514 17 36869546 to 36869565 19 + TSS region transcription start site region 144514
Tssr144515 17 36869567 to 36869581 14 + TSS region transcription start site region 144515
Trim10 17 36869574 to 36877833 8259 + protein coding gene tripartite motif-containing 10
Cpgi9144 17 36870042 to 36870289 247 CpG island CpG island 9144
Tssr144516 17 36870102 to 36870142 40 + TSS region transcription start site region 144516
Gm4276 17 36877954 to 36878479 525 + pseudogene predicted gene 4276
Trim40 17 36881598 to 36890123 8525 - protein coding gene tripartite motif-containing 40
Tssr147981 17 36889664 to 36889675 11 - TSS region transcription start site region 147981
Tssr147982 17 36890034 to 36890050 16 - TSS region transcription start site region 147982
Tssr147983 17 36890133 to 36890161 28 - TSS region transcription start site region 147983
Tssr147984 17 36894028 to 36894035 7 - TSS region transcription start site region 147984
Tssr144517 17 36898110 to 36898129 19 + TSS region transcription start site region 144517
Trim31 17 36898130 to 36910217 12087 + protein coding gene tripartite motif-containing 31
Tssr144518 17 36898215 to 36898226 11 + TSS region transcription start site region 144518
Tssr144519 17 36898319 to 36898339 20 + TSS region transcription start site region 144519