Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:35890493-36150509

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dps3 17 33600747 to 35939288 2338541 QTL delta power in slow-wave sleep 3
Dhx16 17 35879819 to 35892670 12851 + protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 16
2310061I04Rik 17 35892677 to 35897378 4701 - protein coding gene RIKEN cDNA 2310061I04 gene
Tssr147915 17 35895990 to 35896001 11 - TSS region transcription start site region 147915
Tssr147916 17 35896022 to 35896061 39 - TSS region transcription start site region 147916
Cpgi9117 17 35896676 to 35898046 1370 CpG island CpG island 9117
Tssr147917 17 35897079 to 35897141 62 - TSS region transcription start site region 147917
Tssr147918 17 35897299 to 35897324 25 - TSS region transcription start site region 147918
Tssr147919 17 35897326 to 35897331 5 - TSS region transcription start site region 147919
Tssr147920 17 35897342 to 35897369 27 - TSS region transcription start site region 147920
Tssr147921 17 35897371 to 35897418 47 - TSS region transcription start site region 147921
Atat1 17 35897595 to 35910075 12480 - protein coding gene alpha tubulin acetyltransferase 1
Tssr147922 17 35900721 to 35900740 19 - TSS region transcription start site region 147922
Tssr147923 17 35901435 to 35901452 17 - TSS region transcription start site region 147923
Tssr147924 17 35901543 to 35901569 26 - TSS region transcription start site region 147924
Tssr147925 17 35908907 to 35908924 17 - TSS region transcription start site region 147925
Tssr147926 17 35909224 to 35909246 22 - TSS region transcription start site region 147926
Gm16279 17 35909423 to 35913288 3865 + antisense lncRNA gene predicted gene 16279
Tssr147927 17 35909677 to 35909700 23 - TSS region transcription start site region 147927
Tssr144468 17 35909729 to 35909755 26 + TSS region transcription start site region 144468
Cpgi9118 17 35909789 to 35910176 387 CpG island CpG island 9118
Tssr147928 17 35910000 to 35910029 29 - TSS region transcription start site region 147928
Tssr147929 17 35910032 to 35910076 44 - TSS region transcription start site region 147929
Mrps18b 17 35910379 to 35916389 6010 - protein coding gene mitochondrial ribosomal protein S18B
Tssr144469 17 35915687 to 35915698 11 + TSS region transcription start site region 144469
Cpgi9119 17 35916033 to 35917452 1419 CpG island CpG island 9119
Tssr147930 17 35916340 to 35916411 71 - TSS region transcription start site region 147930
Tssr144470 17 35916428 to 35916479 51 + TSS region transcription start site region 144470
Ppp1r10 17 35916512 to 35932283 15771 + protein coding gene protein phosphatase 1, regulatory subunit 10
Tssr144471 17 35916541 to 35916562 21 + TSS region transcription start site region 144471
Tssr144472 17 35916571 to 35916595 24 + TSS region transcription start site region 144472
Tssr144473 17 35916879 to 35916910 31 + TSS region transcription start site region 144473
Tssr144474 17 35916912 to 35916914 2 + TSS region transcription start site region 144474
Tssr144475 17 35916918 to 35916929 11 + TSS region transcription start site region 144475
Tssr144476 17 35916930 to 35916939 9 + TSS region transcription start site region 144476
Tssr144477 17 35916951 to 35916958 7 + TSS region transcription start site region 144477
Tssr144478 17 35916977 to 35916993 16 + TSS region transcription start site region 144478
Mir1894 17 35917889 to 35917969 80 + miRNA gene microRNA 1894
Tssr144479 17 35919249 to 35919276 27 + TSS region transcription start site region 144479
2810427A07Rik 17 35920324 to 35920959 635 unclassified gene RIKEN cDNA 2810427A07 gene
Tssr144480 17 35926427 to 35926433 6 + TSS region transcription start site region 144480
Rbx1-ps 17 35935624 to 35935950 326 - pseudogene ring-box 1, pseudogene
D17Mit233 17 35939173 to 35939288 115 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 233
D17Dcr7 17 35939179 to 35939285 106 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 7
Tssr144481 17 35947161 to 35947170 9 + TSS region transcription start site region 144481
Gm8801 17 35947246 to 35952297 5051 + pseudogene predicted gene 8801
Abcf1 17 35956819 to 35969761 12942 - protein coding gene ATP-binding cassette, sub-family F (GCN20), member 1
Mir877 17 35960730 to 35960814 84 - miRNA gene microRNA 877
Tssr147931 17 35963662 to 35963677 15 - TSS region transcription start site region 147931
Cpgi9120 17 35969252 to 35970080 828 CpG island CpG island 9120
Tssr147932 17 35969528 to 35969569 41 - TSS region transcription start site region 147932
Tssr147933 17 35969697 to 35969711 14 - TSS region transcription start site region 147933
Tssr147934 17 35969724 to 35969785 61 - TSS region transcription start site region 147934
Gm32655 17 35969809 to 35972538 2729 + lncRNA gene predicted gene, 32655
Tssr144482 17 35969885 to 35969966 81 + TSS region transcription start site region 144482
Tssr144483 17 35970056 to 35970068 12 + TSS region transcription start site region 144483
Prr3 17 35972539 to 35980008 7469 - protein coding gene proline-rich polypeptide 3
Cpgi9121 17 35978780 to 35980877 2097 CpG island CpG island 9121
Tssr147935 17 35979237 to 35979308 71 - TSS region transcription start site region 147935
Tssr144484 17 35979554 to 35979563 9 + TSS region transcription start site region 144484
Tssr144485 17 35979564 to 35979591 27 + TSS region transcription start site region 144485
Tssr147936 17 35979791 to 35979831 40 - TSS region transcription start site region 147936
Tssr144486 17 35979907 to 35979924 17 + TSS region transcription start site region 144486
Tssr144487 17 35979931 to 35980009 78 + TSS region transcription start site region 144487
Gnl1 17 35979955 to 35989462 9507 + protein coding gene guanine nucleotide binding protein-like 1
Tssr144488 17 35980080 to 35980091 11 + TSS region transcription start site region 144488
Tssr144489 17 35980114 to 35980133 19 + TSS region transcription start site region 144489
Tssr147937 17 35980197 to 35980235 38 - TSS region transcription start site region 147937
Tssr147938 17 35980238 to 35980253 15 - TSS region transcription start site region 147938
Tssr144490 17 35980403 to 35980426 23 + TSS region transcription start site region 144490
Tssr144491 17 35980446 to 35980455 9 + TSS region transcription start site region 144491
Tssr144492 17 35980856 to 35980872 16 + TSS region transcription start site region 144492
Gm20508 17 35991867 to 35993738 1871 + lincRNA gene predicted gene 20508
Cpgi9122 17 35993740 to 35993967 227 CpG island CpG island 9122
Cpgi9123 17 35994375 to 35994598 223 CpG island CpG island 9123
Tssr144493 17 35994493 to 35994539 46 + TSS region transcription start site region 144493
A930015D03Rik 17 35994504 to 36038174 43670 + antisense lncRNA gene RIKEN cDNA A930015D03 gene
Tssr144494 17 35998014 to 35998022 8 + TSS region transcription start site region 144494
Tssr144495 17 35998368 to 35998372 4 + TSS region transcription start site region 144495
Tssr144496 17 36000662 to 36000681 19 + TSS region transcription start site region 144496
H2-T24 17 36005695 to 36020560 14865 - protein coding gene histocompatibility 2, T region locus 24
Tssr147939 17 36006324 to 36006341 17 - TSS region transcription start site region 147939
Tssr147940 17 36006409 to 36006435 26 - TSS region transcription start site region 147940
Tssr147941 17 36006574 to 36006593 19 - TSS region transcription start site region 147941
Tssr147942 17 36006627 to 36006652 25 - TSS region transcription start site region 147942
Tssr147943 17 36015586 to 36015602 16 - TSS region transcription start site region 147943
Tssr147944 17 36020493 to 36020509 16 - TSS region transcription start site region 147944
Tssr147945 17 36020528 to 36020570 42 - TSS region transcription start site region 147945
Tssr144497 17 36020979 to 36021001 22 + TSS region transcription start site region 144497
Tssr144498 17 36023819 to 36023851 32 + TSS region transcription start site region 144498
Tssr144499 17 36023852 to 36023875 23 + TSS region transcription start site region 144499
H2-T23 17 36029977 to 36032701 2724 - protein coding gene histocompatibility 2, T region locus 23
Tssr147946 17 36030620 to 36030653 33 - TSS region transcription start site region 147946
Cpgi9124 17 36031548 to 36032734 1186 CpG island CpG island 9124
Tssr147947 17 36032516 to 36032562 46 - TSS region transcription start site region 147947
Tssr147948 17 36032563 to 36032575 12 - TSS region transcription start site region 147948
Tssr5112 17 36032668 to 36032679 11 - TSS region transcription start site region 5112
Tssr147949 17 36032682 to 36032742 60 - TSS region transcription start site region 147949
H2-T22 17 36038407 to 36042743 4336 - protein coding gene histocompatibility 2, T region locus 22
Tssr147950 17 36042721 to 36042750 29 - TSS region transcription start site region 147950
Tssr144500 17 36042956 to 36042984 28 + TSS region transcription start site region 144500
Gm6034 17 36042961 to 36058645 15684 + protein coding gene predicted gene 6034
Tssr144501 17 36042992 to 36043012 20 + TSS region transcription start site region 144501
Tssr144502 17 36043026 to 36043027 1 + TSS region transcription start site region 144502
Tssr144503 17 36043047 to 36043056 9 + TSS region transcription start site region 144503
Tssr144504 17 36043823 to 36043839 16 + TSS region transcription start site region 144504
Tssr147951 17 36046561 to 36046570 9 - TSS region transcription start site region 147951
Gm11127 17 36055816 to 36058371 2555 - protein coding gene predicted gene 11127
Gm20950 17 36056315 to 36056838 523 - pseudogene predicted gene, 20950
Tssr5113 17 36058451 to 36058457 6 - TSS region transcription start site region 5113
Gm8810 17 36066108 to 36067753 1645 - pseudogene predicted gene 8810
H2-Bl 17 36080189 to 36084249 4060 - polymorphic pseudogene histocompatibility 2, blastocyst
Cpgi9125 17 36083280 to 36084316 1036 CpG island CpG island 9125
Tssr147952 17 36084232 to 36084255 23 - TSS region transcription start site region 147952
Gm20530 17 36094181 to 36094763 582 + pseudogene predicted gene 20530
Gm8815 17 36094968 to 36096805 1837 - pseudogene predicted gene 8815
H2-T-ps 17 36109234 to 36111658 2424 - pseudogene histocompatibility 2, T region locus, pseudogene
Cpgi9126 17 36111135 to 36111694 559 CpG island CpG island 9126
Tssr147953 17 36111674 to 36111696 22 - TSS region transcription start site region 147953
H2-T10 17 36115871 to 36121444 5573 - polymorphic pseudogene histocompatibility 2, T region locus 10
BC023719 17 36116242 to 36116860 618 + antisense lncRNA gene cDNA sequence BC023719
Tssr144505 17 36121666 to 36121698 32 + TSS region transcription start site region 144505
Gm19684 17 36121678 to 36129692 8014 + protein coding gene predicted gene, 19684
Tssr144506 17 36121757 to 36121763 6 + TSS region transcription start site region 144506
Gm7030 17 36127609 to 36129425 1816 - protein coding gene predicted gene 7030
Tssr147954 17 36129435 to 36129463 28 - TSS region transcription start site region 147954
Tssr147955 17 36129505 to 36129508 3 - TSS region transcription start site region 147955
Gm9574 17 36137188 to 36139105 1917 - pseudogene predicted gene 9574
Gm10499 17 36141758 to 36145923 4165 - pseudogene predicted gene 10499
Tssr144507 17 36143168 to 36143187 19 + TSS region transcription start site region 144507
Cpgi9127 17 36144800 to 36145983 1183 CpG island CpG island 9127
2410017I17Rik 17 36145018 to 36162374 17356 + lincRNA gene RIKEN cDNA 2410017I17 gene
Tssr147956 17 36145699 to 36145723 24 - TSS region transcription start site region 147956
Tssr147957 17 36145761 to 36145769 8 - TSS region transcription start site region 147957
Tssr147958 17 36145927 to 36145938 11 - TSS region transcription start site region 147958
Tssr147959 17 36145939 to 36145956 17 - TSS region transcription start site region 147959