Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:35628636-36868948

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414 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dps3 17 33600747 to 35939288 2338541 QTL delta power in slow-wave sleep 3
Mucl3 17 35635755 to 35643695 7940 - protein coding gene mucin like 3
Tssr147845 17 35637853 to 35637857 4 - TSS region transcription start site region 147845
Tssr147846 17 35638122 to 35638133 11 - TSS region transcription start site region 147846
Tssr147847 17 35638139 to 35638153 14 - TSS region transcription start site region 147847
Tssr147848 17 35638294 to 35638303 9 - TSS region transcription start site region 147848
Tssr147849 17 35643684 to 35643699 15 - TSS region transcription start site region 147849
Sfta2 17 35649708 to 35650569 861 + protein coding gene surfactant associated 2
Tssr5109 17 35649730 to 35649735 5 + TSS region transcription start site region 5109
Tssr144400 17 35649756 to 35649768 12 + TSS region transcription start site region 144400
Tssr144401 17 35649769 to 35649797 28 + TSS region transcription start site region 144401
Tssr144402 17 35649816 to 35649848 32 + TSS region transcription start site region 144402
Gm20483 17 35651828 to 35660367 8539 + antisense lncRNA gene predicted gene 20483
Vars2 17 35655634 to 35667592 11958 - protein coding gene valyl-tRNA synthetase 2, mitochondrial
Cpgi9104 17 35666975 to 35668131 1156 CpG island CpG island 9104
Tssr147850 17 35667325 to 35667348 23 - TSS region transcription start site region 147850
Tssr147851 17 35667484 to 35667496 12 - TSS region transcription start site region 147851
Tssr147852 17 35667546 to 35667618 72 - TSS region transcription start site region 147852
Tssr144403 17 35667661 to 35667677 16 + TSS region transcription start site region 144403
Gtf2h4 17 35667730 to 35673739 6009 - protein coding gene general transcription factor II H, polypeptide 4
Tssr147853 17 35669873 to 35669892 19 - TSS region transcription start site region 147853
Tssr147854 17 35670481 to 35670510 29 - TSS region transcription start site region 147854
Tssr147855 17 35670517 to 35670538 21 - TSS region transcription start site region 147855
Tssr147856 17 35673675 to 35673700 25 - TSS region transcription start site region 147856
Tssr147857 17 35673705 to 35673721 16 - TSS region transcription start site region 147857
Tssr147858 17 35673738 to 35673750 12 - TSS region transcription start site region 147858
Tssr147859 17 35680727 to 35680744 17 - TSS region transcription start site region 147859
Ddr1 17 35681567 to 35704621 23054 - protein coding gene discoidin domain receptor family, member 1
Tssr147860 17 35685420 to 35685431 11 - TSS region transcription start site region 147860
Tssr147861 17 35688989 to 35689031 42 - TSS region transcription start site region 147861
Tssr147862 17 35690384 to 35690421 37 - TSS region transcription start site region 147862
Tssr147863 17 35697702 to 35697750 48 - TSS region transcription start site region 147863
Tssr147864 17 35697770 to 35697781 11 - TSS region transcription start site region 147864
Tssr147865 17 35697980 to 35698001 21 - TSS region transcription start site region 147865
Tssr147866 17 35698006 to 35698031 25 - TSS region transcription start site region 147866
Gm23864 17 35699203 to 35699309 106 - snRNA gene predicted gene, 23864
Cpgi9105 17 35699891 to 35701132 1241 CpG island CpG island 9105
Tssr147867 17 35700486 to 35700516 30 - TSS region transcription start site region 147867
Tssr147868 17 35700520 to 35700606 86 - TSS region transcription start site region 147868
Tssr147869 17 35701937 to 35701946 9 - TSS region transcription start site region 147869
Tssr147870 17 35702003 to 35702016 13 - TSS region transcription start site region 147870
Tssr147871 17 35702022 to 35702037 15 - TSS region transcription start site region 147871
Tssr147872 17 35702040 to 35702068 28 - TSS region transcription start site region 147872
Tssr147873 17 35702216 to 35702228 12 - TSS region transcription start site region 147873
Tssr147874 17 35702297 to 35702374 77 - TSS region transcription start site region 147874
Gm4577 17 35703896 to 35708244 4348 + antisense lncRNA gene predicted gene 4577
Tssr147875 17 35703971 to 35703994 23 - TSS region transcription start site region 147875
Tssr147876 17 35704000 to 35704091 91 - TSS region transcription start site region 147876
Tssr147877 17 35704574 to 35704632 58 - TSS region transcription start site region 147877
Tssr144404 17 35704904 to 35704910 6 + TSS region transcription start site region 144404
Tssr147878 17 35731853 to 35731895 42 - TSS region transcription start site region 147878
Gm20443 17 35737734 to 35739806 2072 - lincRNA gene predicted gene 20443
Gm20442 17 35743323 to 35764191 20868 - lincRNA gene predicted gene 20442
Tssr147879 17 35744100 to 35744138 38 - TSS region transcription start site region 147879
4833427F10Rik 17 35772450 to 35780687 8237 + lincRNA gene RIKEN cDNA 4833427F10 gene
Gm32409 17 35773824 to 35778527 4703 - lncRNA gene predicted gene, 32409
Tssr147880 17 35779102 to 35779123 21 - TSS region transcription start site region 147880
Tssr147881 17 35779603 to 35779627 24 - TSS region transcription start site region 147881
Tssr147882 17 35779918 to 35779931 13 - TSS region transcription start site region 147882
Tssr144405 17 35799714 to 35799721 7 + TSS region transcription start site region 144405
Tssr144406 17 35808387 to 35808390 3 + TSS region transcription start site region 144406
Tssr144407 17 35813865 to 35813892 27 + TSS region transcription start site region 144407
Cpgi9106 17 35817493 to 35817683 190 CpG island CpG island 9106
Cpgi9107 17 35821667 to 35822483 816 CpG island CpG island 9107
Tssr144408 17 35821675 to 35821693 18 + TSS region transcription start site region 144408
Ier3 17 35821713 to 35822911 1198 + protein coding gene immediate early response 3
Cpgi9108 17 35823150 to 35823594 444 CpG island CpG island 9108
Flot1 17 35823320 to 35832787 9467 + protein coding gene flotillin 1
Tssr144409 17 35823327 to 35823371 44 + TSS region transcription start site region 144409
Tssr144410 17 35823373 to 35823424 51 + TSS region transcription start site region 144410
Tssr144411 17 35823425 to 35823436 11 + TSS region transcription start site region 144411
Tssr144412 17 35823509 to 35823547 38 + TSS region transcription start site region 144412
Tssr144413 17 35823558 to 35823571 13 + TSS region transcription start site region 144413
Cpgi9109 17 35829762 to 35830086 324 CpG island CpG island 9109
Tssr144414 17 35829968 to 35829991 23 + TSS region transcription start site region 144414
Tubb5 17 35833920 to 35838301 4381 - protein coding gene tubulin, beta 5 class I
Tssr147883 17 35833973 to 35833974 1 - TSS region transcription start site region 147883
Tssr147884 17 35834045 to 35834073 28 - TSS region transcription start site region 147884
Tssr147885 17 35834326 to 35834341 15 - TSS region transcription start site region 147885
Tssr147886 17 35834364 to 35834392 28 - TSS region transcription start site region 147886
Tssr147887 17 35834476 to 35834494 18 - TSS region transcription start site region 147887
Tssr147888 17 35834589 to 35834615 26 - TSS region transcription start site region 147888
Tssr147889 17 35834691 to 35834700 9 - TSS region transcription start site region 147889
Tssr147890 17 35834740 to 35834844 104 - TSS region transcription start site region 147890
Tssr147891 17 35834895 to 35834998 103 - TSS region transcription start site region 147891
Tssr147892 17 35835130 to 35835195 65 - TSS region transcription start site region 147892
Tssr147893 17 35835385 to 35835413 28 - TSS region transcription start site region 147893
Tssr147894 17 35835442 to 35835480 38 - TSS region transcription start site region 147894
Tssr147895 17 35835496 to 35835520 24 - TSS region transcription start site region 147895
Tssr144415 17 35835517 to 35835539 22 + TSS region transcription start site region 144415
Tssr147896 17 35835534 to 35835567 33 - TSS region transcription start site region 147896
Tssr147897 17 35835571 to 35835617 46 - TSS region transcription start site region 147897
Tssr144416 17 35835621 to 35835675 54 + TSS region transcription start site region 144416
Tssr147898 17 35835626 to 35835704 78 - TSS region transcription start site region 147898
Tssr147899 17 35835762 to 35835783 21 - TSS region transcription start site region 147899
Tssr147900 17 35835803 to 35835814 11 - TSS region transcription start site region 147900
Tssr5110 17 35835833 to 35835855 22 - TSS region transcription start site region 5110
Tssr5111 17 35835864 to 35835901 37 - TSS region transcription start site region 5111
Tssr147901 17 35835910 to 35835927 17 - TSS region transcription start site region 147901
Tssr147902 17 35835931 to 35835966 35 - TSS region transcription start site region 147902
Tssr147903 17 35835970 to 35836000 30 - TSS region transcription start site region 147903
Tssr147904 17 35836001 to 35836033 32 - TSS region transcription start site region 147904
Tssr147905 17 35836205 to 35836281 76 - TSS region transcription start site region 147905
Cpgi9110 17 35836550 to 35837289 739 CpG island CpG island 9110
Tssr147906 17 35836687 to 35836731 44 - TSS region transcription start site region 147906
Tssr147907 17 35837031 to 35837078 47 - TSS region transcription start site region 147907
Cpgi9111 17 35838164 to 35838405 241 CpG island CpG island 9111
Tssr147908 17 35838219 to 35838243 24 - TSS region transcription start site region 147908
Tssr147909 17 35838259 to 35838264 5 - TSS region transcription start site region 147909
Gm32463 17 35838997 to 35840780 1783 + lncRNA gene predicted gene, 32463
Cpgi9112 17 35841187 to 35841980 793 CpG island CpG island 9112
Tssr147910 17 35841333 to 35841361 28 - TSS region transcription start site region 147910
Tssr144417 17 35841491 to 35841505 14 + TSS region transcription start site region 144417
Mdc1 17 35841515 to 35859670 18155 + protein coding gene mediator of DNA damage checkpoint 1
Tssr144418 17 35841603 to 35841659 56 + TSS region transcription start site region 144418
Tssr144419 17 35841668 to 35841683 15 + TSS region transcription start site region 144419
Tssr144420 17 35841698 to 35841721 23 + TSS region transcription start site region 144420
Tssr144421 17 35841791 to 35841805 14 + TSS region transcription start site region 144421
Tssr144422 17 35841823 to 35841834 11 + TSS region transcription start site region 144422
Tssr144423 17 35841881 to 35841889 8 + TSS region transcription start site region 144423
Tssr144424 17 35854832 to 35854841 9 + TSS region transcription start site region 144424
Tssr144425 17 35854886 to 35854892 6 + TSS region transcription start site region 144425
Ppp1r18os 17 35860918 to 35866886 5968 - antisense lncRNA gene protein phosphatase 1, regulatory subunit 18, opposite strand
Cpgi9113 17 35861098 to 35861742 644 CpG island CpG island 9113
Tssr144426 17 35861241 to 35861246 5 + TSS region transcription start site region 144426
Tssr144427 17 35861264 to 35861271 7 + TSS region transcription start site region 144427
Tssr144428 17 35861280 to 35861296 16 + TSS region transcription start site region 144428
Nrm 17 35861318 to 35865400 4082 + protein coding gene nurim (nuclear envelope membrane protein)
Tssr144429 17 35861325 to 35861339 14 + TSS region transcription start site region 144429
Tssr144430 17 35861343 to 35861380 37 + TSS region transcription start site region 144430
Cpgi9114 17 35865497 to 35866892 1395 CpG island CpG island 9114
Ppp1r18 17 35865593 to 35875596 10003 + protein coding gene protein phosphatase 1, regulatory subunit 18
Tssr147911 17 35865704 to 35865707 3 - TSS region transcription start site region 147911
Tssr144431 17 35865787 to 35865843 56 + TSS region transcription start site region 144431
Tssr144432 17 35866071 to 35866085 14 + TSS region transcription start site region 144432
Tssr144433 17 35866121 to 35866144 23 + TSS region transcription start site region 144433
Tssr144434 17 35866152 to 35866203 51 + TSS region transcription start site region 144434
Tssr144435 17 35866245 to 35866256 11 + TSS region transcription start site region 144435
Tssr147912 17 35866493 to 35866511 18 - TSS region transcription start site region 147912
Tssr144436 17 35866606 to 35866675 69 + TSS region transcription start site region 144436
Tssr144437 17 35866677 to 35866699 22 + TSS region transcription start site region 144437
Tssr144438 17 35866700 to 35866719 19 + TSS region transcription start site region 144438
Tssr144439 17 35866821 to 35866832 11 + TSS region transcription start site region 144439
Tssr144440 17 35866842 to 35866852 10 + TSS region transcription start site region 144440
Tssr144441 17 35866855 to 35866877 22 + TSS region transcription start site region 144441
Tssr144442 17 35866932 to 35866946 14 + TSS region transcription start site region 144442
Tssr147913 17 35866948 to 35866960 12 - TSS region transcription start site region 147913
Tssr144443 17 35867041 to 35867058 17 + TSS region transcription start site region 144443
Tssr144444 17 35867149 to 35867166 17 + TSS region transcription start site region 144444
Tssr144445 17 35867179 to 35867233 54 + TSS region transcription start site region 144445
Cpgi9115 17 35867184 to 35867352 168 CpG island CpG island 9115
Tssr144446 17 35867745 to 35867775 30 + TSS region transcription start site region 144446
Tssr144447 17 35867778 to 35867789 11 + TSS region transcription start site region 144447
Tssr144448 17 35868003 to 35868014 11 + TSS region transcription start site region 144448
Tssr147914 17 35868296 to 35868333 37 - TSS region transcription start site region 147914
Gm28033 17 35868302 to 35868397 95 - miRNA gene predicted gene, 28033
Tssr144449 17 35868382 to 35868449 67 + TSS region transcription start site region 144449
Tssr144450 17 35868455 to 35868459 4 + TSS region transcription start site region 144450
Tssr144451 17 35868461 to 35868492 31 + TSS region transcription start site region 144451
Tssr144452 17 35868517 to 35868521 4 + TSS region transcription start site region 144452
Tssr144453 17 35868579 to 35868590 11 + TSS region transcription start site region 144453
Tssr144454 17 35868618 to 35868647 29 + TSS region transcription start site region 144454
Tssr144455 17 35868718 to 35868730 12 + TSS region transcription start site region 144455
Tssr144456 17 35869667 to 35869716 49 + TSS region transcription start site region 144456
Tssr144457 17 35873826 to 35873838 12 + TSS region transcription start site region 144457
Tssr144458 17 35873868 to 35873914 46 + TSS region transcription start site region 144458
Tssr144459 17 35874934 to 35874941 7 + TSS region transcription start site region 144459
Tssr144460 17 35874973 to 35874999 26 + TSS region transcription start site region 144460
Tssr144461 17 35875085 to 35875110 25 + TSS region transcription start site region 144461
Cpgi9116 17 35879435 to 35880291 856 CpG island CpG island 9116
Tssr144462 17 35879770 to 35879824 54 + TSS region transcription start site region 144462
Dhx16 17 35879819 to 35892670 12851 + protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 16
Tssr144463 17 35879825 to 35879845 20 + TSS region transcription start site region 144463
Tssr144464 17 35879895 to 35879909 14 + TSS region transcription start site region 144464
Tssr144465 17 35879953 to 35879962 9 + TSS region transcription start site region 144465
Tssr144466 17 35887872 to 35888023 151 + TSS region transcription start site region 144466
Tssr144467 17 35888125 to 35888139 14 + TSS region transcription start site region 144467
2310061I04Rik 17 35892677 to 35897378 4701 - protein coding gene RIKEN cDNA 2310061I04 gene
Tssr147915 17 35895990 to 35896001 11 - TSS region transcription start site region 147915
Tssr147916 17 35896022 to 35896061 39 - TSS region transcription start site region 147916
Cpgi9117 17 35896676 to 35898046 1370 CpG island CpG island 9117
Tssr147917 17 35897079 to 35897141 62 - TSS region transcription start site region 147917
Tssr147918 17 35897299 to 35897324 25 - TSS region transcription start site region 147918
Tssr147919 17 35897326 to 35897331 5 - TSS region transcription start site region 147919
Tssr147920 17 35897342 to 35897369 27 - TSS region transcription start site region 147920
Tssr147921 17 35897371 to 35897418 47 - TSS region transcription start site region 147921
Atat1 17 35897595 to 35910075 12480 - protein coding gene alpha tubulin acetyltransferase 1
Tssr147922 17 35900721 to 35900740 19 - TSS region transcription start site region 147922
Tssr147923 17 35901435 to 35901452 17 - TSS region transcription start site region 147923
Tssr147924 17 35901543 to 35901569 26 - TSS region transcription start site region 147924
Tssr147925 17 35908907 to 35908924 17 - TSS region transcription start site region 147925
Tssr147926 17 35909224 to 35909246 22 - TSS region transcription start site region 147926
Gm16279 17 35909423 to 35913288 3865 + antisense lncRNA gene predicted gene 16279
Tssr147927 17 35909677 to 35909700 23 - TSS region transcription start site region 147927
Tssr144468 17 35909729 to 35909755 26 + TSS region transcription start site region 144468
Cpgi9118 17 35909789 to 35910176 387 CpG island CpG island 9118
Tssr147928 17 35910000 to 35910029 29 - TSS region transcription start site region 147928
Tssr147929 17 35910032 to 35910076 44 - TSS region transcription start site region 147929
Mrps18b 17 35910379 to 35916389 6010 - protein coding gene mitochondrial ribosomal protein S18B
Tssr144469 17 35915687 to 35915698 11 + TSS region transcription start site region 144469