Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:35507325-35827348

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106 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pou5f1 17 35506032 to 35510777 4745 + protein coding gene POU domain, class 5, transcription factor 1
Gm19553 17 35509077 to 35510551 1474 - antisense lncRNA gene predicted gene, 19553
Tssr144386 17 35509410 to 35509424 14 + TSS region transcription start site region 144386
Tssr144387 17 35509434 to 35509452 18 + TSS region transcription start site region 144387
Tssr144388 17 35510071 to 35510092 21 + TSS region transcription start site region 144388
Tcf19 17 35512735 to 35516824 4089 - protein coding gene transcription factor 19
Cpgi9103 17 35516637 to 35517424 787 CpG island CpG island 9103
Tssr147840 17 35516780 to 35516835 55 - TSS region transcription start site region 147840
Cchcr1 17 35517100 to 35531015 13915 + protein coding gene coiled-coil alpha-helical rod protein 1
Tssr144389 17 35517242 to 35517259 17 + TSS region transcription start site region 144389
Tssr144390 17 35517261 to 35517271 10 + TSS region transcription start site region 144390
Tssr144391 17 35532941 to 35532948 7 + TSS region transcription start site region 144391
Tssr144392 17 35533194 to 35533208 14 + TSS region transcription start site region 144392
Psors1c2 17 35533201 to 35534647 1446 + protein coding gene psoriasis susceptibility 1 candidate 2 (human)
Tssr147841 17 35533951 to 35533962 11 - TSS region transcription start site region 147841
Tssr5105 17 35534103 to 35534119 16 + TSS region transcription start site region 5105
Tssr5106 17 35534129 to 35534138 9 - TSS region transcription start site region 5106
Tssr147842 17 35534159 to 35534166 7 - TSS region transcription start site region 147842
Tssr147843 17 35534243 to 35534256 13 - TSS region transcription start site region 147843
Cdsn 17 35552128 to 35557180 5052 + protein coding gene corneodesmosin
Tssr144393 17 35552167 to 35552182 15 + TSS region transcription start site region 144393
Tssr144394 17 35555209 to 35555224 15 + TSS region transcription start site region 144394
Tssr144395 17 35556047 to 35556054 7 + TSS region transcription start site region 144395
Tssr144396 17 35556320 to 35556355 35 + TSS region transcription start site region 144396
Gm9613 17 35561923 to 35562118 195 - pseudogene predicted gene 9613
Tssr5107 17 35567405 to 35567420 15 + TSS region transcription start site region 5107
Tssr5108 17 35567435 to 35567447 12 + TSS region transcription start site region 5108
Tssr144397 17 35567465 to 35567490 25 + TSS region transcription start site region 144397
2300002M23Rik 17 35567485 to 35568945 1460 + protein coding gene RIKEN cDNA 2300002M23 gene
Tssr144398 17 35567527 to 35567544 17 + TSS region transcription start site region 144398
Gm41577 17 35588594 to 35595574 6980 + lncRNA gene predicted gene, 41577
Tssr144399 17 35590813 to 35590826 13 + TSS region transcription start site region 144399
Gm9573 17 35617923 to 35626637 8714 - protein coding gene predicted gene 9573
Tssr147844 17 35626634 to 35626639 5 - TSS region transcription start site region 147844
Mucl3 17 35635755 to 35643695 7940 - protein coding gene mucin like 3
Tssr147845 17 35637853 to 35637857 4 - TSS region transcription start site region 147845
Tssr147846 17 35638122 to 35638133 11 - TSS region transcription start site region 147846
Tssr147847 17 35638139 to 35638153 14 - TSS region transcription start site region 147847
Tssr147848 17 35638294 to 35638303 9 - TSS region transcription start site region 147848
Tssr147849 17 35643684 to 35643699 15 - TSS region transcription start site region 147849
Sfta2 17 35649708 to 35650569 861 + protein coding gene surfactant associated 2
Tssr5109 17 35649730 to 35649735 5 + TSS region transcription start site region 5109
Tssr144400 17 35649756 to 35649768 12 + TSS region transcription start site region 144400
Tssr144401 17 35649769 to 35649797 28 + TSS region transcription start site region 144401
Tssr144402 17 35649816 to 35649848 32 + TSS region transcription start site region 144402
Gm20483 17 35651828 to 35660367 8539 + antisense lncRNA gene predicted gene 20483
Vars2 17 35655634 to 35667592 11958 - protein coding gene valyl-tRNA synthetase 2, mitochondrial
Cpgi9104 17 35666975 to 35668131 1156 CpG island CpG island 9104
Tssr147850 17 35667325 to 35667348 23 - TSS region transcription start site region 147850
Tssr147851 17 35667484 to 35667496 12 - TSS region transcription start site region 147851
Tssr147852 17 35667546 to 35667618 72 - TSS region transcription start site region 147852
Tssr144403 17 35667661 to 35667677 16 + TSS region transcription start site region 144403
Gtf2h4 17 35667730 to 35673739 6009 - protein coding gene general transcription factor II H, polypeptide 4
Tssr147853 17 35669873 to 35669892 19 - TSS region transcription start site region 147853
Tssr147854 17 35670481 to 35670510 29 - TSS region transcription start site region 147854
Tssr147855 17 35670517 to 35670538 21 - TSS region transcription start site region 147855
Tssr147856 17 35673675 to 35673700 25 - TSS region transcription start site region 147856
Tssr147857 17 35673705 to 35673721 16 - TSS region transcription start site region 147857
Tssr147858 17 35673738 to 35673750 12 - TSS region transcription start site region 147858
Tssr147859 17 35680727 to 35680744 17 - TSS region transcription start site region 147859
Ddr1 17 35681567 to 35704621 23054 - protein coding gene discoidin domain receptor family, member 1
Tssr147860 17 35685420 to 35685431 11 - TSS region transcription start site region 147860
Tssr147861 17 35688989 to 35689031 42 - TSS region transcription start site region 147861
Tssr147862 17 35690384 to 35690421 37 - TSS region transcription start site region 147862
Tssr147863 17 35697702 to 35697750 48 - TSS region transcription start site region 147863
Tssr147864 17 35697770 to 35697781 11 - TSS region transcription start site region 147864
Tssr147865 17 35697980 to 35698001 21 - TSS region transcription start site region 147865
Tssr147866 17 35698006 to 35698031 25 - TSS region transcription start site region 147866
Gm23864 17 35699203 to 35699309 106 - snRNA gene predicted gene, 23864
Cpgi9105 17 35699891 to 35701132 1241 CpG island CpG island 9105
Tssr147867 17 35700486 to 35700516 30 - TSS region transcription start site region 147867
Tssr147868 17 35700520 to 35700606 86 - TSS region transcription start site region 147868
Tssr147869 17 35701937 to 35701946 9 - TSS region transcription start site region 147869
Tssr147870 17 35702003 to 35702016 13 - TSS region transcription start site region 147870
Tssr147871 17 35702022 to 35702037 15 - TSS region transcription start site region 147871
Tssr147872 17 35702040 to 35702068 28 - TSS region transcription start site region 147872
Tssr147873 17 35702216 to 35702228 12 - TSS region transcription start site region 147873
Tssr147874 17 35702297 to 35702374 77 - TSS region transcription start site region 147874
Gm4577 17 35703896 to 35708244 4348 + antisense lncRNA gene predicted gene 4577
Tssr147875 17 35703971 to 35703994 23 - TSS region transcription start site region 147875
Tssr147876 17 35704000 to 35704091 91 - TSS region transcription start site region 147876
Tssr147877 17 35704574 to 35704632 58 - TSS region transcription start site region 147877
Tssr144404 17 35704904 to 35704910 6 + TSS region transcription start site region 144404
Tssr147878 17 35731853 to 35731895 42 - TSS region transcription start site region 147878
Gm20443 17 35737734 to 35739806 2072 - lincRNA gene predicted gene 20443
Gm20442 17 35743323 to 35764191 20868 - lincRNA gene predicted gene 20442
Tssr147879 17 35744100 to 35744138 38 - TSS region transcription start site region 147879
4833427F10Rik 17 35772450 to 35780687 8237 + lincRNA gene RIKEN cDNA 4833427F10 gene
Gm32409 17 35773824 to 35778527 4703 - lncRNA gene predicted gene, 32409
Tssr147880 17 35779102 to 35779123 21 - TSS region transcription start site region 147880
Tssr147881 17 35779603 to 35779627 24 - TSS region transcription start site region 147881
Tssr147882 17 35779918 to 35779931 13 - TSS region transcription start site region 147882
Tssr144405 17 35799714 to 35799721 7 + TSS region transcription start site region 144405
Tssr144406 17 35808387 to 35808390 3 + TSS region transcription start site region 144406
Tssr144407 17 35813865 to 35813892 27 + TSS region transcription start site region 144407
Cpgi9106 17 35817493 to 35817683 190 CpG island CpG island 9106
Cpgi9107 17 35821667 to 35822483 816 CpG island CpG island 9107
Tssr144408 17 35821675 to 35821693 18 + TSS region transcription start site region 144408
Ier3 17 35821713 to 35822911 1198 + protein coding gene immediate early response 3
Cpgi9108 17 35823150 to 35823594 444 CpG island CpG island 9108
Flot1 17 35823320 to 35832787 9467 + protein coding gene flotillin 1
Tssr144409 17 35823327 to 35823371 44 + TSS region transcription start site region 144409
Tssr144410 17 35823373 to 35823424 51 + TSS region transcription start site region 144410
Tssr144411 17 35823425 to 35823436 11 + TSS region transcription start site region 144411
Tssr144412 17 35823509 to 35823547 38 + TSS region transcription start site region 144412
Tssr144413 17 35823558 to 35823571 13 + TSS region transcription start site region 144413