Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:35244816-36054848

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421 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dps3 17 33600747 to 35939288 2338541 QTL delta power in slow-wave sleep 3
Ddx39b 17 35241746 to 35253707 11961 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Tssr144328 17 35247003 to 35247033 30 + TSS region transcription start site region 144328
Tssr144329 17 35247174 to 35247177 3 + TSS region transcription start site region 144329
Gm25128 17 35247175 to 35247250 75 + snoRNA gene predicted gene, 25128
Tssr144330 17 35248966 to 35248991 25 + TSS region transcription start site region 144330
Tssr144331 17 35249081 to 35249129 48 + TSS region transcription start site region 144331
Tssr144332 17 35251214 to 35251237 23 + TSS region transcription start site region 144332
Mir8094 17 35251289 to 35251405 116 + miRNA gene microRNA 8094
Tssr5103 17 35253532 to 35253593 61 + TSS region transcription start site region 5103
Tssr147829 17 35258089 to 35258103 14 - TSS region transcription start site region 147829
Tssr147830 17 35258268 to 35258291 23 - TSS region transcription start site region 147830
Tssr144333 17 35259346 to 35259359 13 + TSS region transcription start site region 144333
5430410E06Rik 17 35262268 to 35263603 1335 unclassified gene RIKEN cDNA 5430410E06 gene
Tssr144334 17 35262726 to 35262776 50 + TSS region transcription start site region 144334
Cpgi9092 17 35262762 to 35264256 1494 CpG island CpG island 9092
Tssr144335 17 35262802 to 35262823 21 + TSS region transcription start site region 144335
Tssr147831 17 35262845 to 35262854 9 - TSS region transcription start site region 147831
Tssr144336 17 35263063 to 35263074 11 + TSS region transcription start site region 144336
Tssr144337 17 35263087 to 35263100 13 + TSS region transcription start site region 144337
H2-D1 17 35263094 to 35267497 4403 + protein coding gene histocompatibility 2, D region locus 1
Tssr144338 17 35263291 to 35263310 19 + TSS region transcription start site region 144338
Tssr144339 17 35263425 to 35263457 32 + TSS region transcription start site region 144339
Tssr147832 17 35263591 to 35263618 27 - TSS region transcription start site region 147832
Tssr144340 17 35263759 to 35263768 9 + TSS region transcription start site region 144340
Tssr144341 17 35263864 to 35263885 21 + TSS region transcription start site region 144341
Tssr144342 17 35263961 to 35263990 29 + TSS region transcription start site region 144342
Tssr144343 17 35264046 to 35264058 12 + TSS region transcription start site region 144343
Tssr147833 17 35264068 to 35264104 36 - TSS region transcription start site region 147833
Tssr144344 17 35264397 to 35264418 21 + TSS region transcription start site region 144344
Tssr144345 17 35264776 to 35264787 11 + TSS region transcription start site region 144345
Tssr144346 17 35264836 to 35264850 14 + TSS region transcription start site region 144346
Tssr144347 17 35264891 to 35264895 4 + TSS region transcription start site region 144347
Tssr144348 17 35265790 to 35265812 22 + TSS region transcription start site region 144348
Tssr144349 17 35266179 to 35266252 73 + TSS region transcription start site region 144349
Tssr147834 17 35267000 to 35267088 88 - TSS region transcription start site region 147834
Tssr144350 17 35267004 to 35267042 38 + TSS region transcription start site region 144350
Tssr144351 17 35267093 to 35267108 15 + TSS region transcription start site region 144351
Tssr144352 17 35267139 to 35267193 54 + TSS region transcription start site region 144352
Tssr147835 17 35267184 to 35267221 37 - TSS region transcription start site region 147835
Tssr144353 17 35267251 to 35267279 28 + TSS region transcription start site region 144353
Tssr5104 17 35267486 to 35267497 11 - TSS region transcription start site region 5104
Gm18733 17 35278154 to 35279231 1077 - pseudogene predicted gene, 18733
Gm18734 17 35304206 to 35306317 2111 - pseudogene predicted gene, 18734
H2-Q1 17 35320405 to 35325099 4694 + protein coding gene histocompatibility 2, Q region locus 1
Cpgi9093 17 35320460 to 35321525 1065 CpG island CpG island 9093
Tssr144354 17 35320529 to 35320557 28 + TSS region transcription start site region 144354
D17Rua9 17 35322046 to 35322259 213 DNA segment DNA segment, Chr 17, Rutgers University 9
Tssr144355 17 35335849 to 35335890 41 + TSS region transcription start site region 144355
Gm8741 17 35335909 to 35336292 383 + pseudogene predicted gene 8741
Cpgi9094 17 35342232 to 35343356 1124 CpG island CpG island 9094
H2-Q2 17 35342242 to 35346762 4520 + protein coding gene histocompatibility 2, Q region locus 2
Tssr144356 17 35342299 to 35342330 31 + TSS region transcription start site region 144356
Tssr144357 17 35343149 to 35343161 12 + TSS region transcription start site region 144357
Tssr144358 17 35343172 to 35343190 18 + TSS region transcription start site region 144358
Tssr144359 17 35345662 to 35345668 6 + TSS region transcription start site region 144359
Cpgi9095 17 35358866 to 35359823 957 CpG island CpG island 9095
Tssr144360 17 35358969 to 35358989 20 + TSS region transcription start site region 144360
H2-Q3 17 35358989 to 35359972 983 + pseudogene histocompatibility 2, Q region locus 3
Gm11131 17 35377021 to 35380292 3271 - antisense lncRNA gene predicted gene 11131
Cpgi9096 17 35379490 to 35380606 1116 CpG island CpG island 9096
Tssr144361 17 35379586 to 35379600 14 + TSS region transcription start site region 144361
Tssr144362 17 35379608 to 35379637 29 + TSS region transcription start site region 144362
H2-Q4 17 35379617 to 35384674 5057 + protein coding gene histocompatibility 2, Q region locus 4
Tssr147836 17 35380256 to 35380277 21 - TSS region transcription start site region 147836
Tssr144363 17 35380403 to 35380435 32 + TSS region transcription start site region 144363
Tssr144364 17 35381543 to 35381548 5 + TSS region transcription start site region 144364
Tssr144365 17 35384195 to 35384226 31 + TSS region transcription start site region 144365
Gm41576 17 35389547 to 35390085 538 + lncRNA gene predicted gene, 41576
Cpgi9097 17 35394094 to 35394609 515 CpG island CpG island 9097
Tssr144366 17 35394097 to 35394099 2 + TSS region transcription start site region 144366
H2-Q5 17 35394099 to 35395630 1531 + polymorphic pseudogene histocompatibility 2, Q region locus 5
Cpgi9098 17 35395004 to 35395164 160 CpG island CpG island 9098
Gm8750 17 35400799 to 35403727 2928 + pseudogene predicted pseudogene 8750
Gm32252 17 35420315 to 35421911 1596 + lncRNA gene predicted gene, 32252
Cpgi9099 17 35424760 to 35425938 1178 CpG island CpG island 9099
Tssr144367 17 35424842 to 35424856 14 + TSS region transcription start site region 144367
Tssr144368 17 35424870 to 35424885 15 + TSS region transcription start site region 144368
H2-Q6 17 35424877 to 35428361 3484 + protein coding gene histocompatibility 2, Q region locus 6
Tssr144369 17 35425314 to 35425350 36 + TSS region transcription start site region 144369
Tssr147837 17 35425350 to 35425380 30 - TSS region transcription start site region 147837
Tssr144370 17 35428103 to 35428115 12 + TSS region transcription start site region 144370
Cpgi9100 17 35438999 to 35439706 707 CpG island CpG island 9100
H2-Q7 17 35439155 to 35443773 4618 + protein coding gene histocompatibility 2, Q region locus 7
Tssr144371 17 35439192 to 35439195 3 + TSS region transcription start site region 144371
Cpgi9101 17 35440026 to 35440226 200 CpG island CpG island 9101
Gm8752 17 35445994 to 35448923 2929 + pseudogene predicted pseudogene 8752
Cpgi9102 17 35469776 to 35471072 1296 CpG island CpG island 9102
Tssr144372 17 35470083 to 35470095 12 + TSS region transcription start site region 144372
H2-Q10 17 35470089 to 35474563 4474 + protein coding gene histocompatibility 2, Q region locus 10
Tssr144373 17 35470435 to 35470441 6 + TSS region transcription start site region 144373
Tssr144374 17 35470759 to 35470762 3 + TSS region transcription start site region 144374
Tssr144375 17 35470863 to 35470881 18 + TSS region transcription start site region 144375
Tssr144376 17 35470974 to 35471019 45 + TSS region transcription start site region 144376
Tssr144377 17 35471644 to 35471683 39 + TSS region transcription start site region 144377
Tssr144378 17 35473482 to 35473490 8 + TSS region transcription start site region 144378
Gm32362 17 35500641 to 35505737 5096 - lncRNA gene predicted gene, 32362
Tssr147838 17 35503924 to 35503936 12 - TSS region transcription start site region 147838
Tssr147839 17 35505912 to 35505934 22 - TSS region transcription start site region 147839
Tssr144379 17 35506028 to 35506049 21 + TSS region transcription start site region 144379
Pou5f1 17 35506032 to 35510777 4745 + protein coding gene POU domain, class 5, transcription factor 1
Tssr144380 17 35506052 to 35506069 17 + TSS region transcription start site region 144380
Tssr144381 17 35506243 to 35506254 11 + TSS region transcription start site region 144381
Tssr144382 17 35506256 to 35506269 13 + TSS region transcription start site region 144382
Tssr144383 17 35506327 to 35506339 12 + TSS region transcription start site region 144383
Tssr144384 17 35506404 to 35506415 11 + TSS region transcription start site region 144384
Tssr144385 17 35506426 to 35506444 18 + TSS region transcription start site region 144385
Gm19553 17 35509077 to 35510551 1474 - antisense lncRNA gene predicted gene, 19553
Tssr144386 17 35509410 to 35509424 14 + TSS region transcription start site region 144386
Tssr144387 17 35509434 to 35509452 18 + TSS region transcription start site region 144387
Tssr144388 17 35510071 to 35510092 21 + TSS region transcription start site region 144388
Tcf19 17 35512735 to 35516824 4089 - protein coding gene transcription factor 19
Cpgi9103 17 35516637 to 35517424 787 CpG island CpG island 9103
Tssr147840 17 35516780 to 35516835 55 - TSS region transcription start site region 147840
Cchcr1 17 35517100 to 35531015 13915 + protein coding gene coiled-coil alpha-helical rod protein 1
Tssr144389 17 35517242 to 35517259 17 + TSS region transcription start site region 144389
Tssr144390 17 35517261 to 35517271 10 + TSS region transcription start site region 144390
Tssr144391 17 35532941 to 35532948 7 + TSS region transcription start site region 144391
Tssr144392 17 35533194 to 35533208 14 + TSS region transcription start site region 144392
Psors1c2 17 35533201 to 35534647 1446 + protein coding gene psoriasis susceptibility 1 candidate 2 (human)
Tssr147841 17 35533951 to 35533962 11 - TSS region transcription start site region 147841
Tssr5105 17 35534103 to 35534119 16 + TSS region transcription start site region 5105
Tssr5106 17 35534129 to 35534138 9 - TSS region transcription start site region 5106
Tssr147842 17 35534159 to 35534166 7 - TSS region transcription start site region 147842
Tssr147843 17 35534243 to 35534256 13 - TSS region transcription start site region 147843
Cdsn 17 35552128 to 35557180 5052 + protein coding gene corneodesmosin
Tssr144393 17 35552167 to 35552182 15 + TSS region transcription start site region 144393
Tssr144394 17 35555209 to 35555224 15 + TSS region transcription start site region 144394
Tssr144395 17 35556047 to 35556054 7 + TSS region transcription start site region 144395
Tssr144396 17 35556320 to 35556355 35 + TSS region transcription start site region 144396
Gm9613 17 35561923 to 35562118 195 - pseudogene predicted gene 9613
Tssr5107 17 35567405 to 35567420 15 + TSS region transcription start site region 5107
Tssr5108 17 35567435 to 35567447 12 + TSS region transcription start site region 5108
Tssr144397 17 35567465 to 35567490 25 + TSS region transcription start site region 144397
2300002M23Rik 17 35567485 to 35568945 1460 + protein coding gene RIKEN cDNA 2300002M23 gene
Tssr144398 17 35567527 to 35567544 17 + TSS region transcription start site region 144398
Gm41577 17 35588594 to 35595574 6980 + lncRNA gene predicted gene, 41577
Tssr144399 17 35590813 to 35590826 13 + TSS region transcription start site region 144399
Gm9573 17 35617923 to 35626637 8714 - protein coding gene predicted gene 9573
Tssr147844 17 35626634 to 35626639 5 - TSS region transcription start site region 147844
Mucl3 17 35635755 to 35643695 7940 - protein coding gene mucin like 3
Tssr147845 17 35637853 to 35637857 4 - TSS region transcription start site region 147845
Tssr147846 17 35638122 to 35638133 11 - TSS region transcription start site region 147846
Tssr147847 17 35638139 to 35638153 14 - TSS region transcription start site region 147847
Tssr147848 17 35638294 to 35638303 9 - TSS region transcription start site region 147848
Tssr147849 17 35643684 to 35643699 15 - TSS region transcription start site region 147849
Sfta2 17 35649708 to 35650569 861 + protein coding gene surfactant associated 2
Tssr5109 17 35649730 to 35649735 5 + TSS region transcription start site region 5109
Tssr144400 17 35649756 to 35649768 12 + TSS region transcription start site region 144400
Tssr144401 17 35649769 to 35649797 28 + TSS region transcription start site region 144401
Tssr144402 17 35649816 to 35649848 32 + TSS region transcription start site region 144402
Gm20483 17 35651828 to 35660367 8539 + antisense lncRNA gene predicted gene 20483
Vars2 17 35655634 to 35667592 11958 - protein coding gene valyl-tRNA synthetase 2, mitochondrial
Cpgi9104 17 35666975 to 35668131 1156 CpG island CpG island 9104
Tssr147850 17 35667325 to 35667348 23 - TSS region transcription start site region 147850
Tssr147851 17 35667484 to 35667496 12 - TSS region transcription start site region 147851
Tssr147852 17 35667546 to 35667618 72 - TSS region transcription start site region 147852
Tssr144403 17 35667661 to 35667677 16 + TSS region transcription start site region 144403
Gtf2h4 17 35667730 to 35673739 6009 - protein coding gene general transcription factor II H, polypeptide 4
Tssr147853 17 35669873 to 35669892 19 - TSS region transcription start site region 147853
Tssr147854 17 35670481 to 35670510 29 - TSS region transcription start site region 147854
Tssr147855 17 35670517 to 35670538 21 - TSS region transcription start site region 147855
Tssr147856 17 35673675 to 35673700 25 - TSS region transcription start site region 147856
Tssr147857 17 35673705 to 35673721 16 - TSS region transcription start site region 147857
Tssr147858 17 35673738 to 35673750 12 - TSS region transcription start site region 147858
Tssr147859 17 35680727 to 35680744 17 - TSS region transcription start site region 147859
Ddr1 17 35681567 to 35704621 23054 - protein coding gene discoidin domain receptor family, member 1
Tssr147860 17 35685420 to 35685431 11 - TSS region transcription start site region 147860
Tssr147861 17 35688989 to 35689031 42 - TSS region transcription start site region 147861
Tssr147862 17 35690384 to 35690421 37 - TSS region transcription start site region 147862
Tssr147863 17 35697702 to 35697750 48 - TSS region transcription start site region 147863
Tssr147864 17 35697770 to 35697781 11 - TSS region transcription start site region 147864
Tssr147865 17 35697980 to 35698001 21 - TSS region transcription start site region 147865
Tssr147866 17 35698006 to 35698031 25 - TSS region transcription start site region 147866
Gm23864 17 35699203 to 35699309 106 - snRNA gene predicted gene, 23864
Cpgi9105 17 35699891 to 35701132 1241 CpG island CpG island 9105
Tssr147867 17 35700486 to 35700516 30 - TSS region transcription start site region 147867
Tssr147868 17 35700520 to 35700606 86 - TSS region transcription start site region 147868
Tssr147869 17 35701937 to 35701946 9 - TSS region transcription start site region 147869
Tssr147870 17 35702003 to 35702016 13 - TSS region transcription start site region 147870
Tssr147871 17 35702022 to 35702037 15 - TSS region transcription start site region 147871
Tssr147872 17 35702040 to 35702068 28 - TSS region transcription start site region 147872
Tssr147873 17 35702216 to 35702228 12 - TSS region transcription start site region 147873
Tssr147874 17 35702297 to 35702374 77 - TSS region transcription start site region 147874
Gm4577 17 35703896 to 35708244 4348 + antisense lncRNA gene predicted gene 4577
Tssr147875 17 35703971 to 35703994 23 - TSS region transcription start site region 147875
Tssr147876 17 35704000 to 35704091 91 - TSS region transcription start site region 147876
Tssr147877 17 35704574 to 35704632 58 - TSS region transcription start site region 147877
Tssr144404 17 35704904 to 35704910 6 + TSS region transcription start site region 144404
Tssr147878 17 35731853 to 35731895 42 - TSS region transcription start site region 147878
Gm20443 17 35737734 to 35739806 2072 - lincRNA gene predicted gene 20443
Gm20442 17 35743323 to 35764191 20868 - lincRNA gene predicted gene 20442
Tssr147879 17 35744100 to 35744138 38 - TSS region transcription start site region 147879
4833427F10Rik 17 35772450 to 35780687 8237 + lincRNA gene RIKEN cDNA 4833427F10 gene
Gm32409 17 35773824 to 35778527 4703 - lncRNA gene predicted gene, 32409
Tssr147880 17 35779102 to 35779123 21 - TSS region transcription start site region 147880
Tssr147881 17 35779603 to 35779627 24 - TSS region transcription start site region 147881
Tssr147882 17 35779918 to 35779931 13 - TSS region transcription start site region 147882
Tssr144405 17 35799714 to 35799721 7 + TSS region transcription start site region 144405
Tssr144406 17 35808387 to 35808390 3 + TSS region transcription start site region 144406