Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:3491914-4901933

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tiam2 17 3326296 to 3519397 193101 + protein coding gene T cell lymphoma invasion and metastasis 2
Tfb1m 17 3519256 to 3557777 38521 - protein coding gene transcription factor B1, mitochondrial
Cldn20 17 3532554 to 3533213 659 + protein coding gene claudin 20
Cpgi8549 17 3557207 to 3557967 760 CpG island CpG island 8549
Tssr142372 17 3557452 to 3557462 10 + TSS region transcription start site region 142372
Tssr142373 17 3557521 to 3557578 57 + TSS region transcription start site region 142373
Tssr146288 17 3557718 to 3557733 15 - TSS region transcription start site region 146288
Tssr146289 17 3557742 to 3557775 33 - TSS region transcription start site region 146289
Tssr146290 17 3557785 to 3557797 12 - TSS region transcription start site region 146290
Tssr146291 17 3557813 to 3557824 11 - TSS region transcription start site region 146291
1700102H20Rik 17 3557824 to 3559862 2038 + lincRNA gene RIKEN cDNA 1700102H20 gene
Tssr4982 17 3557834 to 3557838 4 - TSS region transcription start site region 4982
Tssr142374 17 3557847 to 3557877 30 + TSS region transcription start site region 142374
Tssr142375 17 3558097 to 3558112 15 + TSS region transcription start site region 142375
Gm34155 17 3562349 to 3577325 14976 + lncRNA gene predicted gene, 34155
D17Mit268 17 3618921 to 3619065 144 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-268
Nox3 17 3635240 to 3696261 61021 - protein coding gene NADPH oxidase 3
D17Brg22 17 3644234 to 3644449 215 DNA segment DNA segment, Chr 17, David E. Bergstrom 22
D17Brg23 17 3657357 to 3657575 218 DNA segment DNA segment, Chr 17, David E. Bergstrom 23
Tssr146292 17 3663562 to 3663567 5 - TSS region transcription start site region 146292
Gm34208 17 3663658 to 3671660 8002 + lncRNA gene predicted gene, 34208
D17Brg119 17 3719719 to 3719902 183 DNA segment DNA segment, Chr 17, David E. Bergstrom 119
D17Brg120 17 3732913 to 3733073 160 DNA segment DNA segment, Chr 17, David E. Bergstrom 120
D17Brg29 17 3792598 to 3792802 204 DNA segment DNA segment, Chr 17, David E. Bergstrom 29
D17Brg30 17 3812010 to 3812221 211 DNA segment DNA segment, Chr 17, David E. Bergstrom 30
Cpgi8550 17 3878879 to 3879130 251 CpG island CpG island 8550
l17J1 17 3924615 to 6096434 2171819 heritable phenotypic marker lethal, Chr 17, Jackson 1
Bhr3 17 3924615 to 48559063 44634448 QTL bronchial hyperresponsiveness 3
D17Mit164 17 3924615 to 3924747 132 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 164
Myaa1 17 3924615 to 3924747 132 QTL modifier of Yaa 1
l17J2 17 3924615 to 6096434 2171819 heritable phenotypic marker lethal, Chr 17, Jackson 2
Vtbt18 17 3924615 to 3924747 132 QTL vertebral trabecular bone trait 18
Tssr146293 17 4030939 to 4030944 5 - TSS region transcription start site region 146293
4930470H14Rik 17 4044658 to 4082995 38337 - lincRNA gene RIKEN cDNA 4930470H14 gene
4930548J01Rik 17 4119446 to 4122102 2656 - lncRNA gene RIKEN cDNA 4930548J01 gene
Tssr146294 17 4122088 to 4122137 49 - TSS region transcription start site region 146294
D17Brg198 17 4158105 to 4158283 178 DNA segment DNA segment, Chr 17, David E. Bergstrom 198
D17Brg199 17 4174576 to 4174753 177 DNA segment DNA segment, Chr 17, David E. Bergstrom 199
Gm41516 17 4186468 to 4192986 6518 - lncRNA gene predicted gene, 41516
Tssr4983 17 4196914 to 4196933 19 - TSS region transcription start site region 4983
D17Brg125 17 4281244 to 4281434 190 DNA segment DNA segment, Chr 17, David E. Bergstrom 125
Tssr146295 17 4281603 to 4281612 9 - TSS region transcription start site region 146295
D17Brg140 17 4415582 to 4415769 187 DNA segment DNA segment, Chr 17, David E. Bergstrom 140
D17Brg152 17 4518444 to 4518633 189 DNA segment DNA segment, Chr 17, David E. Bergstrom 152
D17Brg153 17 4527153 to 4527324 171 DNA segment DNA segment, Chr 17, David E. Bergstrom 153
Gm34259 17 4612379 to 4633520 21141 + lncRNA gene predicted gene, 34259
4930517M08Rik 17 4634978 to 4637471 2493 + lincRNA gene RIKEN cDNA 4930517M08 gene
Gm23186 17 4678020 to 4678126 106 + snRNA gene predicted gene, 23186
D17Mit223 17 4780494 to 4780618 124 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 223
Gm49780 17 4792646 to 4792959 313 - pseudogene predicted gene, 49780
Gm34371 17 4794550 to 4797430 2880 + lncRNA gene predicted gene, 34371
Tssr142376 17 4794686 to 4794698 12 + TSS region transcription start site region 142376
Tssr142377 17 4794704 to 4794727 23 + TSS region transcription start site region 142377
Tfv1 17 4804477 to 65330362 60525885 QTL total food volume 1
D17Mit19 17 4804477 to 4804658 181 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 19
4930579D07Rik 17 4851698 to 4892987 41289 - lincRNA gene RIKEN cDNA 4930579D07 gene
Cpgi8551 17 4854106 to 4854336 230 CpG island CpG island 8551
Tssr142378 17 4880579 to 4880581 2 + TSS region transcription start site region 142378
Gm4828 17 4880626 to 4881115 489 + pseudogene predicted gene 4828
Idd23 17 26182159 to 3924615 -22257544 QTL insulin dependent diabetes susceptibility 23
Lmr7 17 27496965 to 4804477 -22692488 QTL leishmaniasis resistance 7
Mnic1 17 45359340 to 4804477 -40554863 QTL macronutrient intake, carbohydrate 1
Alan1 17 46158776 to 4804477 -41354299 QTL alloantigen response 1
Kdnw3 17 47574740 to 4804477 -42770263 QTL kidney weight 3