Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:34654466-35190436

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441 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sles1 17 34000916 to 34956961 956045 QTL systemic lupus erythmatosus suppressor 1
Atf6b 17 34647146 to 34655074 7928 + protein coding gene activating transcription factor 6 beta
Tssr147632 17 34659483 to 34659485 2 - TSS region transcription start site region 147632
Tssr144107 17 34660457 to 34660516 59 + TSS region transcription start site region 144107
Tssr144108 17 34661610 to 34661617 7 + TSS region transcription start site region 144108
Tssr144109 17 34661652 to 34661661 9 + TSS region transcription start site region 144109
Tnxb 17 34670535 to 34719815 49280 + protein coding gene tenascin XB
Cpgi9054 17 34671007 to 34672943 1936 CpG island CpG island 9054
Cpgi9055 17 34679932 to 34680690 758 CpG island CpG island 9055
Cpgi9056 17 34681118 to 34681363 245 CpG island CpG island 9056
Tssr144110 17 34681404 to 34681416 12 + TSS region transcription start site region 144110
Gm24389 17 34687696 to 34687802 106 - snRNA gene predicted gene, 24389
Cyp21a2-ps 17 34719813 to 34722252 2439 - pseudogene cytochrome P450, family 21, subfamily a, polypeptide 2 pseudogene
Tssr5096 17 34722382 to 34722389 7 - TSS region transcription start site region 5096
Tssr147633 17 34722408 to 34722421 13 - TSS region transcription start site region 147633
C4b 17 34728380 to 34743882 15502 - protein coding gene complement component 4B (Chido blood group)
Tssr147634 17 34729387 to 34729397 10 - TSS region transcription start site region 147634
Tssr147635 17 34729880 to 34729904 24 - TSS region transcription start site region 147635
Tssr147636 17 34729982 to 34730016 34 - TSS region transcription start site region 147636
Tssr147637 17 34739988 to 34740005 17 - TSS region transcription start site region 147637
Tssr147638 17 34740260 to 34740275 15 - TSS region transcription start site region 147638
Tssr147639 17 34743849 to 34743890 41 - TSS region transcription start site region 147639
D17Mit33a 17 34744007 to 34744199 192 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 33a
D17Mit31 17 34744039 to 34744199 160 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 31
D17Mit32 17 34744048 to 34744197 149 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 32
D17Mit34 17 34744053 to 34744199 146 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 34
Stk19-ps1 17 34744753 to 34747154 2401 - pseudogene serine/threonine kinase 19, pseudogene 1
Skiv2l-ps1 17 34769833 to 34771228 1395 - pseudogene superkiller viralicidic activity 2-like (S. cerevisiae), pseudogene 1
Gm27471 17 34770579 to 34770645 66 - miRNA gene predicted gene, 27471
Tnxa 17 34776555 to 34801623 25068 + pseudogene tenascin XA (pseudogene)
Cyp21a1 17 34801348 to 34804426 3078 - protein coding gene cytochrome P450, family 21, subfamily a, polypeptide 1
Tssr147640 17 34801373 to 34801391 18 - TSS region transcription start site region 147640
Tssr147641 17 34801419 to 34801455 36 - TSS region transcription start site region 147641
Tssr147642 17 34801754 to 34801759 5 - TSS region transcription start site region 147642
Tssr147643 17 34801761 to 34801773 12 - TSS region transcription start site region 147643
Tssr147644 17 34801786 to 34801797 11 - TSS region transcription start site region 147644
Tssr147645 17 34801888 to 34801904 16 - TSS region transcription start site region 147645
Tssr147646 17 34802474 to 34802476 2 - TSS region transcription start site region 147646
Tssr147647 17 34803009 to 34803026 17 - TSS region transcription start site region 147647
Tssr147648 17 34803032 to 34803054 22 - TSS region transcription start site region 147648
Tssr147649 17 34803063 to 34803072 9 - TSS region transcription start site region 147649
Tssr147650 17 34803485 to 34803496 11 - TSS region transcription start site region 147650
Tssr147651 17 34803497 to 34803512 15 - TSS region transcription start site region 147651
Tssr147652 17 34803941 to 34803955 14 - TSS region transcription start site region 147652
Tssr147653 17 34804064 to 34804078 14 - TSS region transcription start site region 147653
Tssr147654 17 34804088 to 34804099 11 - TSS region transcription start site region 147654
Tssr147655 17 34804116 to 34804127 11 - TSS region transcription start site region 147655
Tssr5097 17 34804308 to 34804325 17 - TSS region transcription start site region 5097
Tssr147656 17 34804331 to 34804343 12 - TSS region transcription start site region 147656
Tssr5098 17 34804403 to 34804410 7 - TSS region transcription start site region 5098
Tssr5099 17 34804465 to 34804474 9 - TSS region transcription start site region 5099
Tssr147657 17 34804482 to 34804491 9 - TSS region transcription start site region 147657
Tssr147658 17 34804514 to 34804537 23 - TSS region transcription start site region 147658
Tssr147659 17 34804546 to 34804568 22 - TSS region transcription start site region 147659
C4a 17 34809092 to 34823454 14362 - protein coding gene complement component 4A (Rodgers blood group)
Tssr147660 17 34810088 to 34810109 21 - TSS region transcription start site region 147660
Tssr147661 17 34810557 to 34810596 39 - TSS region transcription start site region 147661
Tssr147662 17 34810676 to 34810710 34 - TSS region transcription start site region 147662
Tssr147663 17 34823436 to 34823451 15 - TSS region transcription start site region 147663
Tssr147664 17 34823453 to 34823465 12 - TSS region transcription start site region 147664
D17Mit33b 17 34823586 to 34823726 140 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 33b
Stk19 17 34823993 to 34836903 12910 - protein coding gene serine/threonine kinase 19
Cpgi9057 17 34836238 to 34837703 1465 CpG island CpG island 9057
Tssr147665 17 34836648 to 34836692 44 - TSS region transcription start site region 147665
Tssr147666 17 34836869 to 34836959 90 - TSS region transcription start site region 147666
Tssr144111 17 34836987 to 34837049 62 + TSS region transcription start site region 144111
Dxo 17 34837019 to 34839187 2168 + protein coding gene decapping exoribonuclease
Tssr144112 17 34837054 to 34837077 23 + TSS region transcription start site region 144112
Tssr144113 17 34837082 to 34837166 84 + TSS region transcription start site region 144113
Tssr144114 17 34837172 to 34837192 20 + TSS region transcription start site region 144114
Tssr144115 17 34837244 to 34837294 50 + TSS region transcription start site region 144115
Skiv2l 17 34839226 to 34850204 10978 - protein coding gene superkiller viralicidic activity 2-like (S. cerevisiae)
Tssr147667 17 34839341 to 34839356 15 - TSS region transcription start site region 147667
Tssr147668 17 34839359 to 34839372 13 - TSS region transcription start site region 147668
Tssr147669 17 34839432 to 34839446 14 - TSS region transcription start site region 147669
Mir6971 17 34841809 to 34841871 62 - miRNA gene microRNA 6971
Mir6970 17 34845101 to 34845167 66 - miRNA gene microRNA 6970
Cpgi9058 17 34849726 to 34850888 1162 CpG island CpG island 9058
Tssr144116 17 34849884 to 34849901 17 + TSS region transcription start site region 144116
Tssr147670 17 34850162 to 34850205 43 - TSS region transcription start site region 147670
Tssr147671 17 34850329 to 34850349 20 - TSS region transcription start site region 147671
Tssr144117 17 34850373 to 34850422 49 + TSS region transcription start site region 144117
Nelfe 17 34850391 to 34856372 5981 + protein coding gene negative elongation factor complex member E, Rdbp
Tssr144118 17 34850425 to 34850445 20 + TSS region transcription start site region 144118
Tssr144119 17 34850447 to 34850466 19 + TSS region transcription start site region 144119
Tssr144120 17 34850468 to 34850493 25 + TSS region transcription start site region 144120
Tssr144121 17 34850494 to 34850526 32 + TSS region transcription start site region 144121
Tssr144122 17 34850559 to 34850576 17 + TSS region transcription start site region 144122
Tssr144123 17 34856372 to 34856384 12 + TSS region transcription start site region 144123
Cfb 17 34856374 to 34862514 6140 - protein coding gene complement factor B
Gm20547 17 34856412 to 34882042 25630 - protein coding gene predicted gene 20547
Tssr147672 17 34857028 to 34857043 15 - TSS region transcription start site region 147672
Tssr147673 17 34857079 to 34857093 14 - TSS region transcription start site region 147673
Mir6972 17 34857569 to 34857632 63 - miRNA gene microRNA 6972
Tssr147674 17 34858113 to 34858124 11 - TSS region transcription start site region 147674
Tssr147675 17 34860013 to 34860062 49 - TSS region transcription start site region 147675
Tssr147676 17 34860311 to 34860326 15 - TSS region transcription start site region 147676
Tssr147677 17 34860564 to 34860596 32 - TSS region transcription start site region 147677
Tssr147678 17 34860833 to 34860844 11 - TSS region transcription start site region 147678
Tssr147679 17 34860860 to 34860872 12 - TSS region transcription start site region 147679
Tssr147680 17 34860887 to 34860895 8 - TSS region transcription start site region 147680
Tssr147681 17 34861088 to 34861127 39 - TSS region transcription start site region 147681
Tssr147682 17 34861151 to 34861165 14 - TSS region transcription start site region 147682
Tssr147683 17 34861168 to 34861179 11 - TSS region transcription start site region 147683
Tssr147684 17 34861821 to 34861837 16 - TSS region transcription start site region 147684
Tssr147685 17 34861877 to 34861894 17 - TSS region transcription start site region 147685
Tssr147686 17 34861900 to 34861911 11 - TSS region transcription start site region 147686
Tssr147687 17 34862122 to 34862238 116 - TSS region transcription start site region 147687
Tssr147688 17 34862246 to 34862352 106 - TSS region transcription start site region 147688
Tssr147689 17 34862461 to 34862472 11 - TSS region transcription start site region 147689
Tssr147690 17 34862473 to 34862535 62 - TSS region transcription start site region 147690
C2 17 34862602 to 34882100 19498 - protein coding gene complement component 2 (within H-2S)
Tssr147691 17 34882004 to 34882080 76 - TSS region transcription start site region 147691
Tssr147692 17 34882094 to 34882114 20 - TSS region transcription start site region 147692
Gm40706 17 34892804 to 34895216 2412 - lncRNA gene predicted gene, 40706
Cpgi9059 17 34893880 to 34895633 1753 CpG island CpG island 9059
Tssr144124 17 34894515 to 34894573 58 + TSS region transcription start site region 144124
Zbtb12 17 34894559 to 34897064 2505 + protein coding gene zinc finger and BTB domain containing 12
Tssr144125 17 34894579 to 34894594 15 + TSS region transcription start site region 144125
Tssr144126 17 34894644 to 34894685 41 + TSS region transcription start site region 144126
Tssr144127 17 34894686 to 34894700 14 + TSS region transcription start site region 144127
Tssr147693 17 34895983 to 34895996 13 - TSS region transcription start site region 147693
Tssr144128 17 34896958 to 34896977 19 + TSS region transcription start site region 144128
Cpgi9060 17 34898079 to 34899759 1680 CpG island CpG island 9060
Tssr144129 17 34898276 to 34898315 39 + TSS region transcription start site region 144129
Tssr144130 17 34898463 to 34898501 38 + TSS region transcription start site region 144130
Ehmt2 17 34898469 to 34914052 15583 + protein coding gene euchromatic histone lysine N-methyltransferase 2
Tssr144131 17 34898586 to 34898605 19 + TSS region transcription start site region 144131
Tssr144132 17 34898931 to 34898986 55 + TSS region transcription start site region 144132
Tssr144133 17 34903169 to 34903180 11 + TSS region transcription start site region 144133
Tssr144134 17 34903341 to 34903354 13 + TSS region transcription start site region 144134
Tssr144135 17 34911201 to 34911227 26 + TSS region transcription start site region 144135
Tssr144136 17 34911243 to 34911257 14 + TSS region transcription start site region 144136
Tssr144137 17 34914245 to 34914276 31 + TSS region transcription start site region 144137
Tssr144138 17 34914432 to 34914446 14 + TSS region transcription start site region 144138
Tssr144139 17 34914459 to 34914476 17 + TSS region transcription start site region 144139
Slc44a4 17 34914466 to 34930436 15970 + protein coding gene solute carrier family 44, member 4
Cpgi9061 17 34931045 to 34932152 1107 CpG island CpG island 9061
Neu1 17 34931253 to 34935953 4700 + protein coding gene neuraminidase 1
Tssr144140 17 34931331 to 34931343 12 + TSS region transcription start site region 144140
Tssr144141 17 34931348 to 34931384 36 + TSS region transcription start site region 144141
Tssr144142 17 34931904 to 34931937 33 + TSS region transcription start site region 144142
Cpgi9062 17 34934009 to 34934922 913 CpG island CpG island 9062
Tssr144143 17 34934059 to 34934079 20 + TSS region transcription start site region 144143
D17Nki1 17 34946744 to 34947028 284 DNA segment DNA segment, Chr 17, Netherlands Cancer Institute 1
D17Nki2 17 34947008 to 34947219 211 DNA segment DNA segment, Chr 17, Netherlands Cancer Institute 2
1110038B12Rik 17 34950238 to 34952471 2233 - lncRNA gene RIKEN cDNA 1110038B12 gene
Snord52 17 34950950 to 34951008 58 - snoRNA gene small nucleolar RNA, C/D box 52
Tssr147694 17 34951288 to 34951292 4 - TSS region transcription start site region 147694
Cpgi9063 17 34951888 to 34952619 731 CpG island CpG island 9063
Tssr147695 17 34951897 to 34951929 32 - TSS region transcription start site region 147695
Gm25744 17 34952013 to 34952075 62 - snoRNA gene predicted gene, 25744
Tssr147696 17 34952459 to 34952475 16 - TSS region transcription start site region 147696
Gm8696 17 34954328 to 34954712 384 - pseudogene predicted gene 8696
Tssr144144 17 34956432 to 34956436 4 + TSS region transcription start site region 144144
Ssial4 17 34956436 to 34959238 2802 QTL susceptibility to sialadenitis 4
Hspa1b 17 34956436 to 34959238 2802 - protein coding gene heat shock protein 1B
D17Mit1011 17 34956656 to 34956838 182 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1011
Tssr147697 17 34956671 to 34956686 15 - TSS region transcription start site region 147697
Tssr147698 17 34956819 to 34956828 9 - TSS region transcription start site region 147698
Mbis4 17 34956841 to 69858931 34902090 QTL Mycobacterium bovis-induced systemic lupus erythematosus 4
D17Mit83 17 34956841 to 34956961 120 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 83
D17Nds2 17 34956842 to 34956943 101 DNA segment DNA segment, Chr 17, Nuffield Department of Surgery 2
D17Mit83.1 17 34956990 to 34957099 109 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 83.1
Cpgi9064 17 34957043 to 34957658 615 CpG island CpG island 9064
Tssr147699 17 34957123 to 34957147 24 - TSS region transcription start site region 147699
7330403C04Rik 17 34957618 to 34959818 2200 unclassified non-coding RNA gene RIKEN cDNA 7330403C04 gene
Cpgi9065 17 34958073 to 34958226 153 CpG island CpG island 9065
Cpgi9066 17 34958818 to 34959660 842 CpG island CpG island 9066
Tssr147700 17 34959113 to 34959150 37 - TSS region transcription start site region 147700
Tssr147701 17 34959232 to 34959238 6 - TSS region transcription start site region 147701
Tssr144145 17 34959574 to 34959579 5 + TSS region transcription start site region 144145
Tssr147702 17 34959584 to 34959592 8 - TSS region transcription start site region 147702
Hspa1a 17 34969359 to 34972156 2797 - protein coding gene heat shock protein 1A
Tssr147703 17 34969418 to 34969427 9 - TSS region transcription start site region 147703
Tssr147704 17 34969804 to 34969807 3 - TSS region transcription start site region 147704
Gm20481 17 34969912 to 34972136 2224 + protein coding gene predicted gene 20481
Cpgi9067 17 34970282 to 34970568 286 CpG island CpG island 9067
Cpgi9068 17 34971738 to 34972627 889 CpG island CpG island 9068
Tssr147705 17 34972150 to 34972158 8 - TSS region transcription start site region 147705
Tssr144146 17 34972687 to 34972705 18 + TSS region transcription start site region 144146
Hspa1l 17 34972703 to 34979228 6525 + protein coding gene heat shock protein 1-like
Tssr144147 17 34972708 to 34972729 21 + TSS region transcription start site region 144147
D17Nki3 17 34976054 to 34976182 128 DNA segment DNA segment, Chr 17, Netherlands Cancer Institute 3
D17Nki4 17 34976408 to 34976486 78 DNA segment DNA segment, Chr 17, Netherlands Cancer Institute 4
Gm10501 17 34976899 to 34981788 4889 - antisense lncRNA gene predicted gene 10501
Cpgi9069 17 34976932 to 34978678 1746 CpG island CpG island 9069
Cpgi9070 17 34981604 to 34982593 989 CpG island CpG island 9070
Tssr147706 17 34981760 to 34981829 69 - TSS region transcription start site region 147706
Tssr144148 17 34981847 to 34981897 50 + TSS region transcription start site region 144148
Lsm2 17 34981862 to 34985891 4029 + protein coding gene LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
Tssr144149 17 34981898 to 34981940 42 + TSS region transcription start site region 144149
Tssr144150 17 34981947 to 34981948 1 + TSS region transcription start site region 144150
Tssr144151 17 34981952 to 34981986 34 + TSS region transcription start site region 144151
Tssr144152 17 34982022 to 34982034 12 + TSS region transcription start site region 144152
Tssr144153 17 34982099 to 34982151 52 + TSS region transcription start site region 144153
Tssr144154 17 34982154 to 34982168 14 + TSS region transcription start site region 144154
Tssr147707 17 34982477 to 34982491 14 - TSS region transcription start site region 147707
Tssr144155 17 34982586 to 34982652 66 + TSS region transcription start site region 144155
Tssr144156 17 34985533 to 34985567 34 + TSS region transcription start site region 144156