Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:34467877-34612651

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pas19 17 29492190 to 34535463 5043273 QTL pulmonary adenoma susceptibility 19
Btnl4 17 34469042 to 34475937 6895 - protein coding gene butyrophilin-like 4
Tssr147595 17 34477290 to 34477320 30 - TSS region transcription start site region 147595
Gm15332 17 34480763 to 34481119 356 - pseudogene predicted gene 15332
Btnl5-ps 17 34488070 to 34497429 9359 - pseudogene butyrophilin-like 5, pseudogene
Tssr147596 17 34497368 to 34497398 30 - TSS region transcription start site region 147596
Gm15331 17 34501107 to 34501491 384 - pseudogene predicted gene 15331
Btnl6 17 34507935 to 34517352 9417 - protein coding gene butyrophilin-like 6
Tssr147597 17 34518639 to 34518672 33 - TSS region transcription start site region 147597
Gm15329 17 34521750 to 34521904 154 - pseudogene predicted gene 15329
Btnl7-ps 17 34532877 to 34547651 14774 - pseudogene butyrophilin-like 7, pseudogene
D17Mit231 17 34535349 to 34535463 114 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 231
D17Dcr6 17 34535365 to 34535460 95 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 6
Tssr147598 17 34535991 to 34536001 10 - TSS region transcription start site region 147598
Gm31560 17 34543730 to 34557313 13583 + lncRNA gene predicted gene, 31560
Tssr147599 17 34549305 to 34549318 13 - TSS region transcription start site region 147599
Tssr147600 17 34549331 to 34549348 17 - TSS region transcription start site region 147600
Tssr147601 17 34549374 to 34549377 3 - TSS region transcription start site region 147601
Notch4 17 34564268 to 34588503 24235 + protein coding gene notch 4
Tssr144034 17 34564295 to 34564299 4 + TSS region transcription start site region 144034
Tssr144035 17 34564300 to 34564319 19 + TSS region transcription start site region 144035
Tssr144036 17 34564333 to 34564343 10 + TSS region transcription start site region 144036
Tssr144037 17 34564346 to 34564360 14 + TSS region transcription start site region 144037
Tssr144038 17 34564373 to 34564385 12 + TSS region transcription start site region 144038
Gm20462 17 34567730 to 34568137 407 - pseudogene predicted gene 20462
Cpgi9042 17 34572356 to 34572645 289 CpG island CpG island 9042
Cpgi9043 17 34586545 to 34588056 1511 CpG island CpG island 9043
Tssr144039 17 34587642 to 34587679 37 + TSS region transcription start site region 144039
Tssr144040 17 34589799 to 34589830 31 + TSS region transcription start site region 144040
Gpsm3 17 34589806 to 34591754 1948 + protein coding gene G-protein signalling modulator 3 (AGS3-like, C. elegans)
Tssr144041 17 34589832 to 34589913 81 + TSS region transcription start site region 144041
Tssr144042 17 34589914 to 34589928 14 + TSS region transcription start site region 144042
Tssr144043 17 34589954 to 34589965 11 + TSS region transcription start site region 144043
Tssr144044 17 34590056 to 34590104 48 + TSS region transcription start site region 144044
Tssr144045 17 34590115 to 34590142 27 + TSS region transcription start site region 144045
Tssr144046 17 34590162 to 34590205 43 + TSS region transcription start site region 144046
Tssr144047 17 34590409 to 34590448 39 + TSS region transcription start site region 144047
Tssr144048 17 34590450 to 34590464 14 + TSS region transcription start site region 144048
Tssr144049 17 34590503 to 34590539 36 + TSS region transcription start site region 144049
Tssr144050 17 34590793 to 34590829 36 + TSS region transcription start site region 144050
Tssr144051 17 34590834 to 34590847 13 + TSS region transcription start site region 144051
Tssr144052 17 34590851 to 34590896 45 + TSS region transcription start site region 144052
Cpgi9044 17 34591818 to 34592792 974 CpG island CpG island 9044
Tssr144053 17 34592215 to 34592226 11 + TSS region transcription start site region 144053
Tssr144054 17 34592248 to 34592329 81 + TSS region transcription start site region 144054
Pbx2 17 34592471 to 34597341 4870 + protein coding gene pre B cell leukemia homeobox 2
Tssr144055 17 34592522 to 34592566 44 + TSS region transcription start site region 144055
Tssr144056 17 34593388 to 34593417 29 + TSS region transcription start site region 144056
Cpgi9045 17 34593890 to 34594079 189 CpG island CpG island 9045
Tssr144057 17 34596077 to 34596097 20 + TSS region transcription start site region 144057
Tssr144058 17 34597852 to 34597868 16 + TSS region transcription start site region 144058
Ager 17 34597862 to 34600936 3074 + protein coding gene advanced glycosylation end product-specific receptor
Tssr144059 17 34598152 to 34598164 12 + TSS region transcription start site region 144059
Tssr144060 17 34598443 to 34598450 7 + TSS region transcription start site region 144060
Rnf5 17 34601099 to 34603561 2462 - protein coding gene ring finger protein 5
Gm20463 17 34601151 to 34601576 425 + antisense lncRNA gene predicted gene 20463
Cpgi9046 17 34603253 to 34603646 393 CpG island CpG island 9046
Tssr147602 17 34603399 to 34603410 11 - TSS region transcription start site region 147602
Tssr147603 17 34603477 to 34603488 11 - TSS region transcription start site region 147603
Tssr147604 17 34603522 to 34603626 104 - TSS region transcription start site region 147604
Tssr147605 17 34603675 to 34603702 27 - TSS region transcription start site region 147605
Tssr147606 17 34603709 to 34603724 15 - TSS region transcription start site region 147606
Tssr147607 17 34603738 to 34603749 11 - TSS region transcription start site region 147607
Cpgi9047 17 34603960 to 34604697 737 CpG island CpG island 9047
Tssr144061 17 34604184 to 34604195 11 + TSS region transcription start site region 144061
Tssr144062 17 34604286 to 34604304 18 + TSS region transcription start site region 144062
Agpat1 17 34604303 to 34613449 9146 + protein coding gene 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)
Tssr144063 17 34604783 to 34604790 7 + TSS region transcription start site region 144063
Tssr144064 17 34604795 to 34604809 14 + TSS region transcription start site region 144064
Tssr144065 17 34604819 to 34604856 37 + TSS region transcription start site region 144065
Tssr144066 17 34604884 to 34604921 37 + TSS region transcription start site region 144066
Tssr144067 17 34604929 to 34604951 22 + TSS region transcription start site region 144067
Tssr144068 17 34605443 to 34605476 33 + TSS region transcription start site region 144068
Tssr144069 17 34605489 to 34605498 9 + TSS region transcription start site region 144069
Cpgi9048 17 34605518 to 34606447 929 CpG island CpG island 9048
Tssr147608 17 34605717 to 34605731 14 - TSS region transcription start site region 147608
Tssr147609 17 34605747 to 34605765 18 - TSS region transcription start site region 147609
Tssr144070 17 34605855 to 34605862 7 + TSS region transcription start site region 144070
Tssr144071 17 34605864 to 34605881 17 + TSS region transcription start site region 144071
Tssr144072 17 34605899 to 34605939 40 + TSS region transcription start site region 144072
Tssr147610 17 34606345 to 34606359 14 - TSS region transcription start site region 147610
Tssr147611 17 34606649 to 34606662 13 - TSS region transcription start site region 147611
Tssr147612 17 34606907 to 34606923 16 - TSS region transcription start site region 147612
Tssr144073 17 34608979 to 34608980 1 + TSS region transcription start site region 144073
Tssr144074 17 34608986 to 34608989 3 + TSS region transcription start site region 144074
Tssr144075 17 34608997 to 34609021 24 + TSS region transcription start site region 144075
Tssr144076 17 34610009 to 34610019 10 + TSS region transcription start site region 144076
Tssr144077 17 34610933 to 34610948 15 + TSS region transcription start site region 144077
Tssr144078 17 34611807 to 34611820 13 + TSS region transcription start site region 144078
Tssr144079 17 34612594 to 34612630 36 + TSS region transcription start site region 144079