Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:34299954-34569972

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pas19 17 29492190 to 34535463 5043273 QTL pulmonary adenoma susceptibility 19
Sst6 17 34243234 to 34333707 90473 QTL susceptibility to tuberculosis 6
Gm20513 17 34293073 to 34305720 12647 - lincRNA gene predicted gene 20513
Tssr143999 17 34300860 to 34300876 16 + TSS region transcription start site region 143999
Tssr147577 17 34301145 to 34301163 18 - TSS region transcription start site region 147577
Tssr147578 17 34301192 to 34301206 14 - TSS region transcription start site region 147578
Tssr144000 17 34301464 to 34301482 18 + TSS region transcription start site region 144000
Tssr147579 17 34304809 to 34304825 16 - TSS region transcription start site region 147579
Tssr147580 17 34304862 to 34304871 9 - TSS region transcription start site region 147580
Tssr144001 17 34305009 to 34305014 5 + TSS region transcription start site region 144001
Tssr144002 17 34305041 to 34305062 21 + TSS region transcription start site region 144002
Tssr144003 17 34305068 to 34305075 7 + TSS region transcription start site region 144003
Tssr147581 17 34305703 to 34305714 11 - TSS region transcription start site region 147581
Tssr147582 17 34305715 to 34305728 13 - TSS region transcription start site region 147582
H2-Eb1 17 34305877 to 34316199 10322 + protein coding gene histocompatibility 2, class II antigen E beta
Tssr144004 17 34305889 to 34305909 20 + TSS region transcription start site region 144004
Tssr144005 17 34305910 to 34305934 24 + TSS region transcription start site region 144005
Tssr144006 17 34306586 to 34306601 15 + TSS region transcription start site region 144006
Tssr144007 17 34306648 to 34306655 7 + TSS region transcription start site region 144007
Tssr144008 17 34306663 to 34306672 9 + TSS region transcription start site region 144008
Tssr144009 17 34306747 to 34306760 13 + TSS region transcription start site region 144009
Tssr144010 17 34307547 to 34307550 3 + TSS region transcription start site region 144010
Cpgi9039 17 34309453 to 34310028 575 CpG island CpG island 9039
Tssr147583 17 34309817 to 34309831 14 - TSS region transcription start site region 147583
Tssr144011 17 34312067 to 34312072 5 + TSS region transcription start site region 144011
Tssr144012 17 34312112 to 34312116 4 + TSS region transcription start site region 144012
Tssr144013 17 34315086 to 34315097 11 + TSS region transcription start site region 144013
Tssr144014 17 34315902 to 34315925 23 + TSS region transcription start site region 144014
Tssr147584 17 34315906 to 34315921 15 - TSS region transcription start site region 147584
Tssr144015 17 34325635 to 34325642 7 + TSS region transcription start site region 144015
Tssr144016 17 34325658 to 34325679 21 + TSS region transcription start site region 144016
H2-Eb2 17 34325665 to 34340229 14564 + protein coding gene histocompatibility 2, class II antigen E beta2
Tssr144017 17 34330051 to 34330066 15 + TSS region transcription start site region 144017
D17Mit22 17 34333549 to 34333707 158 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 22
Gm11140 17 34340877 to 34341409 532 protein coding gene predicted gene 11140
Tssr144018 17 34341952 to 34341959 7 + TSS region transcription start site region 144018
D17Rua10 17 34341956 to 34342190 234 DNA segment DNA segment, Chr 17, Rutgers University 10
Tssr147585 17 34342125 to 34342141 16 - TSS region transcription start site region 147585
H2-Ea-ps 17 34342933 to 34344643 1710 - pseudogene histocompatibility 2, class II antigen E alpha, pseudogene
Tssr147586 17 34342950 to 34342977 27 - TSS region transcription start site region 147586
Tssr147587 17 34342988 to 34343003 15 - TSS region transcription start site region 147587
Tssr147588 17 34343010 to 34343034 24 - TSS region transcription start site region 147588
Tssr147589 17 34343697 to 34343750 53 - TSS region transcription start site region 147589
D17Rua2 17 34344131 to 34344300 169 DNA segment DNA segment, Chr 17, Rutgers University 2
Tssr147590 17 34344186 to 34344191 5 - TSS region transcription start site region 147590
Tssr147591 17 34344557 to 34344594 37 - TSS region transcription start site region 147591
Tssr147592 17 34347659 to 34347678 19 - TSS region transcription start site region 147592
Tssr144019 17 34347801 to 34347805 4 + TSS region transcription start site region 144019
Tssr144020 17 34354787 to 34354836 49 + TSS region transcription start site region 144020
Btnl2 17 34354822 to 34369493 14671 + protein coding gene butyrophilin-like 2
Tssr144021 17 34354842 to 34354865 23 + TSS region transcription start site region 144021
Tssr144022 17 34355233 to 34355251 18 + TSS region transcription start site region 144022
Tssr144023 17 34372271 to 34372278 7 + TSS region transcription start site region 144023
Tssr144024 17 34377124 to 34377154 30 + TSS region transcription start site region 144024
Btnl1 17 34377132 to 34385776 8644 + protein coding gene butyrophilin-like 1
Tssr144025 17 34377160 to 34377177 17 + TSS region transcription start site region 144025
Gm15320 17 34391361 to 34398162 6801 - pseudogene predicted gene 15320
Cpgi9040 17 34392305 to 34392597 292 CpG island CpG island 9040
Tssr144026 17 34392306 to 34392314 8 + TSS region transcription start site region 144026
Gm15321 17 34392403 to 34392690 287 + pseudogene predicted gene 15321
Tssr144027 17 34398802 to 34398830 28 + TSS region transcription start site region 144027
BC051142 17 34398820 to 34460734 61914 + protein coding gene cDNA sequence BC051142
Cpgi9041 17 34398828 to 34399197 369 CpG island CpG island 9041
Tssr144028 17 34398853 to 34398858 5 + TSS region transcription start site region 144028
Tssr144029 17 34399533 to 34399538 5 + TSS region transcription start site region 144029
Tssr147593 17 34416515 to 34416522 7 - TSS region transcription start site region 147593
Tssr144030 17 34417319 to 34417331 12 + TSS region transcription start site region 144030
Tssr144031 17 34417347 to 34417361 14 + TSS region transcription start site region 144031
Tssr147594 17 34420174 to 34420187 13 - TSS region transcription start site region 147594
Tssr144032 17 34434954 to 34434972 18 + TSS region transcription start site region 144032
Tssr144033 17 34459889 to 34459900 11 + TSS region transcription start site region 144033
Tssr5095 17 34460307 to 34460320 13 + TSS region transcription start site region 5095
Btnl4 17 34469042 to 34475937 6895 - protein coding gene butyrophilin-like 4
Tssr147595 17 34477290 to 34477320 30 - TSS region transcription start site region 147595
Gm15332 17 34480763 to 34481119 356 - pseudogene predicted gene 15332
Btnl5-ps 17 34488070 to 34497429 9359 - pseudogene butyrophilin-like 5, pseudogene
Tssr147596 17 34497368 to 34497398 30 - TSS region transcription start site region 147596
Gm15331 17 34501107 to 34501491 384 - pseudogene predicted gene 15331
Btnl6 17 34507935 to 34517352 9417 - protein coding gene butyrophilin-like 6
Tssr147597 17 34518639 to 34518672 33 - TSS region transcription start site region 147597
Gm15329 17 34521750 to 34521904 154 - pseudogene predicted gene 15329
Btnl7-ps 17 34532877 to 34547651 14774 - pseudogene butyrophilin-like 7, pseudogene
D17Mit231 17 34535349 to 34535463 114 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 231
D17Dcr6 17 34535365 to 34535460 95 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 6
Tssr147598 17 34535991 to 34536001 10 - TSS region transcription start site region 147598
Gm31560 17 34543730 to 34557313 13583 + lncRNA gene predicted gene, 31560
Tssr147599 17 34549305 to 34549318 13 - TSS region transcription start site region 147599
Tssr147600 17 34549331 to 34549348 17 - TSS region transcription start site region 147600
Tssr147601 17 34549374 to 34549377 3 - TSS region transcription start site region 147601
Notch4 17 34564268 to 34588503 24235 + protein coding gene notch 4
Tssr144034 17 34564295 to 34564299 4 + TSS region transcription start site region 144034
Tssr144035 17 34564300 to 34564319 19 + TSS region transcription start site region 144035
Tssr144036 17 34564333 to 34564343 10 + TSS region transcription start site region 144036
Tssr144037 17 34564346 to 34564360 14 + TSS region transcription start site region 144037
Tssr144038 17 34564373 to 34564385 12 + TSS region transcription start site region 144038
Gm20462 17 34567730 to 34568137 407 - pseudogene predicted gene 20462