Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:34002355-34182366

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41575 17 34000290 to 34003190 2900 + lncRNA gene predicted gene, 41575
Gm31082 17 34003191 to 34019784 16593 - lncRNA gene predicted gene, 31082
Gm7326 17 34017060 to 34017881 821 + pseudogene predicted gene 7326
Ring1 17 34020792 to 34024680 3888 - protein coding gene ring finger protein 1
Cpgi9022 17 34024218 to 34025575 1357 CpG island CpG island 9022
Tssr147506 17 34024639 to 34024676 37 - TSS region transcription start site region 147506
Gm26940 17 34024966 to 34025070 104 - lincRNA gene predicted gene, 26940
Mir219a-1 17 34024983 to 34025092 109 - miRNA gene microRNA 219a-1
Mir219c 17 34025012 to 34025071 59 + miRNA gene microRNA 219c
Tssr147507 17 34025486 to 34025513 27 - TSS region transcription start site region 147507
H2-Ke6 17 34026033 to 34028055 2022 - protein coding gene H2-K region expressed gene 6
Gm20427 17 34026034 to 34031572 5538 - unclassified non-coding RNA gene predicted gene 20427
Cpgi9023 17 34027009 to 34028298 1289 CpG island CpG island 9023
Tssr147508 17 34028003 to 34028006 3 - TSS region transcription start site region 147508
Tssr147509 17 34028016 to 34028023 7 - TSS region transcription start site region 147509
Tssr147510 17 34028044 to 34028076 32 - TSS region transcription start site region 147510
Slc39a7 17 34028267 to 34031690 3423 - protein coding gene solute carrier family 39 (zinc transporter), member 7
Cpgi9024 17 34030979 to 34033046 2067 CpG island CpG island 9024
Tssr147511 17 34031556 to 34031634 78 - TSS region transcription start site region 147511
Tssr147512 17 34031644 to 34031667 23 - TSS region transcription start site region 147512
Tssr147513 17 34031671 to 34031674 3 - TSS region transcription start site region 147513
Tssr147514 17 34031684 to 34031699 15 - TSS region transcription start site region 147514
Tssr143883 17 34031787 to 34031821 34 + TSS region transcription start site region 143883
Rxrb 17 34031812 to 34038393 6581 + protein coding gene retinoid X receptor beta
Tssr147515 17 34032045 to 34032061 16 - TSS region transcription start site region 147515
Tssr143884 17 34032071 to 34032123 52 + TSS region transcription start site region 143884
Tssr143885 17 34032348 to 34032375 27 + TSS region transcription start site region 143885
Cpgi9025 17 34038544 to 34039117 573 CpG island CpG island 9025
Tssr143886 17 34039141 to 34039153 12 + TSS region transcription start site region 143886
Tssr143887 17 34039166 to 34039182 16 + TSS region transcription start site region 143887
Tssr143888 17 34039228 to 34039255 27 + TSS region transcription start site region 143888
Tssr5090 17 34039297 to 34039306 9 + TSS region transcription start site region 5090
Tssr5091 17 34039334 to 34039344 10 + TSS region transcription start site region 5091
Col11a2 17 34039437 to 34066685 27248 + protein coding gene collagen, type XI, alpha 2
Tssr143889 17 34039462 to 34039481 19 + TSS region transcription start site region 143889
Cpgi9026 17 34039474 to 34039674 200 CpG island CpG island 9026
Tssr143890 17 34048398 to 34048411 13 + TSS region transcription start site region 143890
Tssr143891 17 34048417 to 34048425 8 + TSS region transcription start site region 143891
Tssr143892 17 34048433 to 34048438 5 + TSS region transcription start site region 143892
Tssr143893 17 34048444 to 34048456 12 + TSS region transcription start site region 143893
Tssr5092 17 34055060 to 34055082 22 + TSS region transcription start site region 5092
H2-Pb 17 34073762 to 34076162 2400 - pseudogene histocompatibility 2, P region beta locus
Cpgi9027 17 34075997 to 34076236 239 CpG island CpG island 9027
BC051537 17 34083843 to 34095309 11466 - antisense lncRNA gene cDNA sequence BC051537
H2-Pa 17 34084672 to 34085823 1151 + pseudogene histocompatibility 2, P region alpha locus
Tssr143894 17 34092355 to 34092366 11 + TSS region transcription start site region 143894
Tssr143895 17 34092376 to 34092421 45 + TSS region transcription start site region 143895
H2-Oa 17 34092379 to 34095234 2855 + protein coding gene histocompatibility 2, O region alpha locus
D17Dgm3 17 34092449 to 34092524 75 DNA segment DNA segment, Chr 17, Department of Geriatric Medicine 3
Tssr143896 17 34092849 to 34092858 9 + TSS region transcription start site region 143896
Tssr143897 17 34092873 to 34092891 18 + TSS region transcription start site region 143897
Tssr143898 17 34092905 to 34092916 11 + TSS region transcription start site region 143898
Cpgi9028 17 34093905 to 34094093 188 CpG island CpG island 9028
Cpgi9029 17 34094359 to 34094532 173 CpG island CpG island 9029
Brd2 17 34112019 to 34122615 10596 - protein coding gene bromodomain containing 2
Tssr147516 17 34115220 to 34115264 44 - TSS region transcription start site region 147516
Tssr147517 17 34115448 to 34115498 50 - TSS region transcription start site region 147517
Tssr147518 17 34115499 to 34115572 73 - TSS region transcription start site region 147518
Tssr147519 17 34115576 to 34115593 17 - TSS region transcription start site region 147519
Tssr147520 17 34116228 to 34116243 15 - TSS region transcription start site region 147520
Tssr147521 17 34116271 to 34116287 16 - TSS region transcription start site region 147521
Tssr147522 17 34116291 to 34116309 18 - TSS region transcription start site region 147522
Tssr147523 17 34116329 to 34116342 13 - TSS region transcription start site region 147523
Tssr147524 17 34117007 to 34117026 19 - TSS region transcription start site region 147524
Cpgi9030 17 34118069 to 34123049 4980 CpG island CpG island 9030
Tssr147525 17 34118476 to 34118522 46 - TSS region transcription start site region 147525
Tssr147526 17 34119317 to 34119340 23 - TSS region transcription start site region 147526
Tssr143899 17 34119539 to 34119542 3 + TSS region transcription start site region 143899
Tssr143900 17 34119549 to 34119594 45 + TSS region transcription start site region 143900
Tssr143901 17 34119883 to 34119933 50 + TSS region transcription start site region 143901
Tssr147527 17 34120311 to 34120334 23 - TSS region transcription start site region 147527
Tssr147528 17 34120378 to 34120422 44 - TSS region transcription start site region 147528
Tssr147529 17 34120969 to 34120991 22 - TSS region transcription start site region 147529
Tssr147530 17 34120993 to 34121039 46 - TSS region transcription start site region 147530
Tssr143902 17 34121390 to 34121405 15 + TSS region transcription start site region 143902
Tssr143903 17 34121411 to 34121433 22 + TSS region transcription start site region 143903
Tssr147531 17 34121944 to 34121972 28 - TSS region transcription start site region 147531
Tssr147532 17 34122206 to 34122241 35 - TSS region transcription start site region 147532
Tssr147533 17 34122259 to 34122282 23 - TSS region transcription start site region 147533
Tssr147534 17 34122311 to 34122375 64 - TSS region transcription start site region 147534
Tssr147535 17 34122572 to 34122632 60 - TSS region transcription start site region 147535
Tssr147536 17 34122635 to 34122646 11 - TSS region transcription start site region 147536
Tssr143904 17 34122679 to 34122721 42 + TSS region transcription start site region 143904
Tssr143905 17 34122815 to 34122883 68 + TSS region transcription start site region 143905
Tssr147537 17 34129400 to 34129412 12 - TSS region transcription start site region 147537
Gm20493 17 34133325 to 34133537 212 - pseudogene predicted gene 20493
H2-DMa 17 34135182 to 34139101 3919 + protein coding gene histocompatibility 2, class II, locus DMa
Cpgi9031 17 34135361 to 34135854 493 CpG island CpG island 9031
Tssr143906 17 34135581 to 34135671 90 + TSS region transcription start site region 143906
Tssr143907 17 34135684 to 34135729 45 + TSS region transcription start site region 143907
Tssr143908 17 34137294 to 34137311 17 + TSS region transcription start site region 143908
Tssr143909 17 34138002 to 34138024 22 + TSS region transcription start site region 143909
Tssr143910 17 34139399 to 34139403 4 + TSS region transcription start site region 143910
Tssr143911 17 34143222 to 34143255 33 + TSS region transcription start site region 143911
Tssr143912 17 34143341 to 34143375 34 + TSS region transcription start site region 143912
Tssr143913 17 34145199 to 34145215 16 + TSS region transcription start site region 143913
Tssr143914 17 34145225 to 34145230 5 + TSS region transcription start site region 143914
Tssr143915 17 34145231 to 34145265 34 + TSS region transcription start site region 143915
Tssr143916 17 34145311 to 34145331 20 + TSS region transcription start site region 143916
H2-DMb2 17 34145416 to 34151095 5679 + protein coding gene histocompatibility 2, class II, locus Mb2
Tssr143917 17 34153152 to 34153164 12 + TSS region transcription start site region 143917
Tssr143918 17 34153165 to 34153239 74 + TSS region transcription start site region 143918
H2-DMb1 17 34153191 to 34160229 7038 + protein coding gene histocompatibility 2, class II, locus Mb1
Tssr143919 17 34157633 to 34157675 42 + TSS region transcription start site region 143919
D17Dgm1 17 34179377 to 34179509 132 DNA segment DNA segment, Chr 17, Department of Geriatric Medicine 1
Psmb9 17 34182030 to 34187330 5300 - protein coding gene proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)
D17Dgm6 17 34182101 to 34182226 125 DNA segment DNA segment, Chr 17, Department of Geriatric Medicine 6