Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:33998398-34098411

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
H2-K1 17 33996017 to 34000333 4316 - protein coding gene histocompatibility 2, K1, K region
Tssr147496 17 33998975 to 33998996 21 - TSS region transcription start site region 147496
Cpgi9021 17 33999140 to 34000760 1620 CpG island CpG island 9021
Tssr147497 17 33999466 to 33999487 21 - TSS region transcription start site region 147497
Tssr147498 17 33999490 to 33999508 18 - TSS region transcription start site region 147498
Tssr143882 17 33999763 to 33999775 12 + TSS region transcription start site region 143882
Tssr147499 17 33999792 to 33999802 10 - TSS region transcription start site region 147499
Tssr147500 17 33999923 to 33999957 34 - TSS region transcription start site region 147500
Tssr147501 17 33999965 to 34000003 38 - TSS region transcription start site region 147501
Tssr147502 17 34000248 to 34000268 20 - TSS region transcription start site region 147502
Tssr147503 17 34000276 to 34000290 14 - TSS region transcription start site region 147503
Gm41575 17 34000290 to 34003190 2900 + lncRNA gene predicted gene, 41575
Tssr147504 17 34000300 to 34000318 18 - TSS region transcription start site region 147504
Tssr147505 17 34000328 to 34000338 10 - TSS region transcription start site region 147505
D17Mit28 17 34000916 to 34001035 119 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 28
Sles1 17 34000916 to 34956961 956045 QTL systemic lupus erythmatosus suppressor 1
Gm31082 17 34003191 to 34019784 16593 - lncRNA gene predicted gene, 31082
Gm7326 17 34017060 to 34017881 821 + pseudogene predicted gene 7326
Ring1 17 34020792 to 34024680 3888 - protein coding gene ring finger protein 1
Cpgi9022 17 34024218 to 34025575 1357 CpG island CpG island 9022
Tssr147506 17 34024639 to 34024676 37 - TSS region transcription start site region 147506
Gm26940 17 34024966 to 34025070 104 - lincRNA gene predicted gene, 26940
Mir219a-1 17 34024983 to 34025092 109 - miRNA gene microRNA 219a-1
Mir219c 17 34025012 to 34025071 59 + miRNA gene microRNA 219c
Tssr147507 17 34025486 to 34025513 27 - TSS region transcription start site region 147507
H2-Ke6 17 34026033 to 34028055 2022 - protein coding gene H2-K region expressed gene 6
Gm20427 17 34026034 to 34031572 5538 - unclassified non-coding RNA gene predicted gene 20427
Cpgi9023 17 34027009 to 34028298 1289 CpG island CpG island 9023
Tssr147508 17 34028003 to 34028006 3 - TSS region transcription start site region 147508
Tssr147509 17 34028016 to 34028023 7 - TSS region transcription start site region 147509
Tssr147510 17 34028044 to 34028076 32 - TSS region transcription start site region 147510
Slc39a7 17 34028267 to 34031690 3423 - protein coding gene solute carrier family 39 (zinc transporter), member 7
Cpgi9024 17 34030979 to 34033046 2067 CpG island CpG island 9024
Tssr147511 17 34031556 to 34031634 78 - TSS region transcription start site region 147511
Tssr147512 17 34031644 to 34031667 23 - TSS region transcription start site region 147512
Tssr147513 17 34031671 to 34031674 3 - TSS region transcription start site region 147513
Tssr147514 17 34031684 to 34031699 15 - TSS region transcription start site region 147514
Tssr143883 17 34031787 to 34031821 34 + TSS region transcription start site region 143883
Rxrb 17 34031812 to 34038393 6581 + protein coding gene retinoid X receptor beta
Tssr147515 17 34032045 to 34032061 16 - TSS region transcription start site region 147515
Tssr143884 17 34032071 to 34032123 52 + TSS region transcription start site region 143884
Tssr143885 17 34032348 to 34032375 27 + TSS region transcription start site region 143885
Cpgi9025 17 34038544 to 34039117 573 CpG island CpG island 9025
Tssr143886 17 34039141 to 34039153 12 + TSS region transcription start site region 143886
Tssr143887 17 34039166 to 34039182 16 + TSS region transcription start site region 143887
Tssr143888 17 34039228 to 34039255 27 + TSS region transcription start site region 143888
Tssr5090 17 34039297 to 34039306 9 + TSS region transcription start site region 5090
Tssr5091 17 34039334 to 34039344 10 + TSS region transcription start site region 5091
Col11a2 17 34039437 to 34066685 27248 + protein coding gene collagen, type XI, alpha 2
Tssr143889 17 34039462 to 34039481 19 + TSS region transcription start site region 143889
Cpgi9026 17 34039474 to 34039674 200 CpG island CpG island 9026
Tssr143890 17 34048398 to 34048411 13 + TSS region transcription start site region 143890
Tssr143891 17 34048417 to 34048425 8 + TSS region transcription start site region 143891
Tssr143892 17 34048433 to 34048438 5 + TSS region transcription start site region 143892
Tssr143893 17 34048444 to 34048456 12 + TSS region transcription start site region 143893
Tssr5092 17 34055060 to 34055082 22 + TSS region transcription start site region 5092
H2-Pb 17 34073762 to 34076162 2400 - pseudogene histocompatibility 2, P region beta locus
Cpgi9027 17 34075997 to 34076236 239 CpG island CpG island 9027
BC051537 17 34083843 to 34095309 11466 - antisense lncRNA gene cDNA sequence BC051537
H2-Pa 17 34084672 to 34085823 1151 + pseudogene histocompatibility 2, P region alpha locus
Tssr143894 17 34092355 to 34092366 11 + TSS region transcription start site region 143894
Tssr143895 17 34092376 to 34092421 45 + TSS region transcription start site region 143895
H2-Oa 17 34092379 to 34095234 2855 + protein coding gene histocompatibility 2, O region alpha locus
D17Dgm3 17 34092449 to 34092524 75 DNA segment DNA segment, Chr 17, Department of Geriatric Medicine 3
Tssr143896 17 34092849 to 34092858 9 + TSS region transcription start site region 143896
Tssr143897 17 34092873 to 34092891 18 + TSS region transcription start site region 143897
Tssr143898 17 34092905 to 34092916 11 + TSS region transcription start site region 143898
Cpgi9028 17 34093905 to 34094093 188 CpG island CpG island 9028
Cpgi9029 17 34094359 to 34094532 173 CpG island CpG island 9029