Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:33966012-34030341

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vps52 17 33955785 to 33966495 10710 + protein coding gene VPS52 GARP complex subunit
H2-K2 17 33974831 to 33978790 3959 - pseudogene histocompatibility 2, K region locus 2
Tssr143874 17 33974994 to 33975021 27 + TSS region transcription start site region 143874
Tssr147485 17 33975031 to 33975055 24 - TSS region transcription start site region 147485
Tssr143875 17 33975480 to 33975497 17 + TSS region transcription start site region 143875
Tssr147486 17 33975517 to 33975537 20 - TSS region transcription start site region 147486
Cpgi9019 17 33977772 to 33978978 1206 CpG island CpG island 9019
Tssr147487 17 33978454 to 33978480 26 - TSS region transcription start site region 147487
Tssr147488 17 33978737 to 33978739 2 - TSS region transcription start site region 147488
Tssr147489 17 33978782 to 33978841 59 - TSS region transcription start site region 147489
Tssr147490 17 33978853 to 33978860 7 - TSS region transcription start site region 147490
Gm4152 17 33980486 to 33980744 258 - pseudogene predicted gene 4152
Cpgi9020 17 33981358 to 33981688 330 CpG island CpG island 9020
AA388235 17 33981492 to 33985358 3866 + lncRNA gene expressed sequence AA388235
Tssr143876 17 33996013 to 33996040 27 + TSS region transcription start site region 143876
H2-K1 17 33996017 to 34000333 4316 - protein coding gene histocompatibility 2, K1, K region
Tssr143877 17 33996175 to 33996331 156 + TSS region transcription start site region 143877
Tssr147491 17 33996189 to 33996248 59 - TSS region transcription start site region 147491
Tssr147492 17 33996286 to 33996367 81 - TSS region transcription start site region 147492
Tssr147493 17 33996384 to 33996430 46 - TSS region transcription start site region 147493
Tssr143878 17 33996393 to 33996419 26 + TSS region transcription start site region 143878
Tssr147494 17 33996488 to 33996499 11 - TSS region transcription start site region 147494
Tssr143879 17 33997023 to 33997053 30 + TSS region transcription start site region 143879
Tssr143880 17 33997059 to 33997071 12 + TSS region transcription start site region 143880
Tssr147495 17 33997061 to 33997127 66 - TSS region transcription start site region 147495
Tssr143881 17 33997494 to 33997537 43 + TSS region transcription start site region 143881
Tssr147496 17 33998975 to 33998996 21 - TSS region transcription start site region 147496
Cpgi9021 17 33999140 to 34000760 1620 CpG island CpG island 9021
Tssr147497 17 33999466 to 33999487 21 - TSS region transcription start site region 147497
Tssr147498 17 33999490 to 33999508 18 - TSS region transcription start site region 147498
Tssr143882 17 33999763 to 33999775 12 + TSS region transcription start site region 143882
Tssr147499 17 33999792 to 33999802 10 - TSS region transcription start site region 147499
Tssr147500 17 33999923 to 33999957 34 - TSS region transcription start site region 147500
Tssr147501 17 33999965 to 34000003 38 - TSS region transcription start site region 147501
Tssr147502 17 34000248 to 34000268 20 - TSS region transcription start site region 147502
Tssr147503 17 34000276 to 34000290 14 - TSS region transcription start site region 147503
Gm41575 17 34000290 to 34003190 2900 + lncRNA gene predicted gene, 41575
Tssr147504 17 34000300 to 34000318 18 - TSS region transcription start site region 147504
Tssr147505 17 34000328 to 34000338 10 - TSS region transcription start site region 147505
D17Mit28 17 34000916 to 34001035 119 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 28
Sles1 17 34000916 to 34956961 956045 QTL systemic lupus erythmatosus suppressor 1
Gm31082 17 34003191 to 34019784 16593 - lncRNA gene predicted gene, 31082
Gm7326 17 34017060 to 34017881 821 + pseudogene predicted gene 7326
Ring1 17 34020792 to 34024680 3888 - protein coding gene ring finger protein 1
Cpgi9022 17 34024218 to 34025575 1357 CpG island CpG island 9022
Tssr147506 17 34024639 to 34024676 37 - TSS region transcription start site region 147506
Gm26940 17 34024966 to 34025070 104 - lincRNA gene predicted gene, 26940
Mir219a-1 17 34024983 to 34025092 109 - miRNA gene microRNA 219a-1
Mir219c 17 34025012 to 34025071 59 + miRNA gene microRNA 219c
Tssr147507 17 34025486 to 34025513 27 - TSS region transcription start site region 147507
H2-Ke6 17 34026033 to 34028055 2022 - protein coding gene H2-K region expressed gene 6
Gm20427 17 34026034 to 34031572 5538 - unclassified non-coding RNA gene predicted gene 20427
Cpgi9023 17 34027009 to 34028298 1289 CpG island CpG island 9023
Tssr147508 17 34028003 to 34028006 3 - TSS region transcription start site region 147508
Tssr147509 17 34028016 to 34028023 7 - TSS region transcription start site region 147509
Tssr147510 17 34028044 to 34028076 32 - TSS region transcription start site region 147510
Slc39a7 17 34028267 to 34031690 3423 - protein coding gene solute carrier family 39 (zinc transporter), member 7