Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:33963016-34093023

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vps52 17 33955785 to 33966495 10710 + protein coding gene VPS52 GARP complex subunit
H2-K2 17 33974831 to 33978790 3959 - pseudogene histocompatibility 2, K region locus 2
Tssr143874 17 33974994 to 33975021 27 + TSS region transcription start site region 143874
Tssr147485 17 33975031 to 33975055 24 - TSS region transcription start site region 147485
Tssr143875 17 33975480 to 33975497 17 + TSS region transcription start site region 143875
Tssr147486 17 33975517 to 33975537 20 - TSS region transcription start site region 147486
Cpgi9019 17 33977772 to 33978978 1206 CpG island CpG island 9019
Tssr147487 17 33978454 to 33978480 26 - TSS region transcription start site region 147487
Tssr147488 17 33978737 to 33978739 2 - TSS region transcription start site region 147488
Tssr147489 17 33978782 to 33978841 59 - TSS region transcription start site region 147489
Tssr147490 17 33978853 to 33978860 7 - TSS region transcription start site region 147490
Gm4152 17 33980486 to 33980744 258 - pseudogene predicted gene 4152
Cpgi9020 17 33981358 to 33981688 330 CpG island CpG island 9020
AA388235 17 33981492 to 33985358 3866 + lncRNA gene expressed sequence AA388235
Tssr143876 17 33996013 to 33996040 27 + TSS region transcription start site region 143876
H2-K1 17 33996017 to 34000333 4316 - protein coding gene histocompatibility 2, K1, K region
Tssr143877 17 33996175 to 33996331 156 + TSS region transcription start site region 143877
Tssr147491 17 33996189 to 33996248 59 - TSS region transcription start site region 147491
Tssr147492 17 33996286 to 33996367 81 - TSS region transcription start site region 147492
Tssr147493 17 33996384 to 33996430 46 - TSS region transcription start site region 147493
Tssr143878 17 33996393 to 33996419 26 + TSS region transcription start site region 143878
Tssr147494 17 33996488 to 33996499 11 - TSS region transcription start site region 147494
Tssr143879 17 33997023 to 33997053 30 + TSS region transcription start site region 143879
Tssr143880 17 33997059 to 33997071 12 + TSS region transcription start site region 143880
Tssr147495 17 33997061 to 33997127 66 - TSS region transcription start site region 147495
Tssr143881 17 33997494 to 33997537 43 + TSS region transcription start site region 143881
Tssr147496 17 33998975 to 33998996 21 - TSS region transcription start site region 147496
Cpgi9021 17 33999140 to 34000760 1620 CpG island CpG island 9021
Tssr147497 17 33999466 to 33999487 21 - TSS region transcription start site region 147497
Tssr147498 17 33999490 to 33999508 18 - TSS region transcription start site region 147498
Tssr143882 17 33999763 to 33999775 12 + TSS region transcription start site region 143882
Tssr147499 17 33999792 to 33999802 10 - TSS region transcription start site region 147499
Tssr147500 17 33999923 to 33999957 34 - TSS region transcription start site region 147500
Tssr147501 17 33999965 to 34000003 38 - TSS region transcription start site region 147501
Tssr147502 17 34000248 to 34000268 20 - TSS region transcription start site region 147502
Tssr147503 17 34000276 to 34000290 14 - TSS region transcription start site region 147503
Gm41575 17 34000290 to 34003190 2900 + lncRNA gene predicted gene, 41575
Tssr147504 17 34000300 to 34000318 18 - TSS region transcription start site region 147504
Tssr147505 17 34000328 to 34000338 10 - TSS region transcription start site region 147505
Sles1 17 34000916 to 34956961 956045 QTL systemic lupus erythmatosus suppressor 1
D17Mit28 17 34000916 to 34001035 119 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 28
Gm31082 17 34003191 to 34019784 16593 - lncRNA gene predicted gene, 31082
Gm7326 17 34017060 to 34017881 821 + pseudogene predicted gene 7326
Ring1 17 34020792 to 34024680 3888 - protein coding gene ring finger protein 1
Cpgi9022 17 34024218 to 34025575 1357 CpG island CpG island 9022
Tssr147506 17 34024639 to 34024676 37 - TSS region transcription start site region 147506
Gm26940 17 34024966 to 34025070 104 - lincRNA gene predicted gene, 26940
Mir219a-1 17 34024983 to 34025092 109 - miRNA gene microRNA 219a-1
Mir219c 17 34025012 to 34025071 59 + miRNA gene microRNA 219c
Tssr147507 17 34025486 to 34025513 27 - TSS region transcription start site region 147507
H2-Ke6 17 34026033 to 34028055 2022 - protein coding gene H2-K region expressed gene 6
Gm20427 17 34026034 to 34031572 5538 - unclassified non-coding RNA gene predicted gene 20427
Cpgi9023 17 34027009 to 34028298 1289 CpG island CpG island 9023
Tssr147508 17 34028003 to 34028006 3 - TSS region transcription start site region 147508
Tssr147509 17 34028016 to 34028023 7 - TSS region transcription start site region 147509
Tssr147510 17 34028044 to 34028076 32 - TSS region transcription start site region 147510
Slc39a7 17 34028267 to 34031690 3423 - protein coding gene solute carrier family 39 (zinc transporter), member 7
Cpgi9024 17 34030979 to 34033046 2067 CpG island CpG island 9024
Tssr147511 17 34031556 to 34031634 78 - TSS region transcription start site region 147511
Tssr147512 17 34031644 to 34031667 23 - TSS region transcription start site region 147512
Tssr147513 17 34031671 to 34031674 3 - TSS region transcription start site region 147513
Tssr147514 17 34031684 to 34031699 15 - TSS region transcription start site region 147514
Tssr143883 17 34031787 to 34031821 34 + TSS region transcription start site region 143883
Rxrb 17 34031812 to 34038393 6581 + protein coding gene retinoid X receptor beta
Tssr147515 17 34032045 to 34032061 16 - TSS region transcription start site region 147515
Tssr143884 17 34032071 to 34032123 52 + TSS region transcription start site region 143884
Tssr143885 17 34032348 to 34032375 27 + TSS region transcription start site region 143885
Cpgi9025 17 34038544 to 34039117 573 CpG island CpG island 9025
Tssr143886 17 34039141 to 34039153 12 + TSS region transcription start site region 143886
Tssr143887 17 34039166 to 34039182 16 + TSS region transcription start site region 143887
Tssr143888 17 34039228 to 34039255 27 + TSS region transcription start site region 143888
Tssr5090 17 34039297 to 34039306 9 + TSS region transcription start site region 5090
Tssr5091 17 34039334 to 34039344 10 + TSS region transcription start site region 5091
Col11a2 17 34039437 to 34066685 27248 + protein coding gene collagen, type XI, alpha 2
Tssr143889 17 34039462 to 34039481 19 + TSS region transcription start site region 143889
Cpgi9026 17 34039474 to 34039674 200 CpG island CpG island 9026
Tssr143890 17 34048398 to 34048411 13 + TSS region transcription start site region 143890
Tssr143891 17 34048417 to 34048425 8 + TSS region transcription start site region 143891
Tssr143892 17 34048433 to 34048438 5 + TSS region transcription start site region 143892
Tssr143893 17 34048444 to 34048456 12 + TSS region transcription start site region 143893
Tssr5092 17 34055060 to 34055082 22 + TSS region transcription start site region 5092
H2-Pb 17 34073762 to 34076162 2400 - pseudogene histocompatibility 2, P region beta locus
Cpgi9027 17 34075997 to 34076236 239 CpG island CpG island 9027
BC051537 17 34083843 to 34095309 11466 - antisense lncRNA gene cDNA sequence BC051537
H2-Pa 17 34084672 to 34085823 1151 + pseudogene histocompatibility 2, P region alpha locus
Tssr143894 17 34092355 to 34092366 11 + TSS region transcription start site region 143894
Tssr143895 17 34092376 to 34092421 45 + TSS region transcription start site region 143895
H2-Oa 17 34092379 to 34095234 2855 + protein coding gene histocompatibility 2, O region alpha locus
D17Dgm3 17 34092449 to 34092524 75 DNA segment DNA segment, Chr 17, Department of Geriatric Medicine 3
Tssr143896 17 34092849 to 34092858 9 + TSS region transcription start site region 143896
Tssr143897 17 34092873 to 34092891 18 + TSS region transcription start site region 143897
Tssr143898 17 34092905 to 34092916 11 + TSS region transcription start site region 143898