Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:33927772-34028978

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tapbp 17 33919478 to 33929290 9812 + protein coding gene TAP binding protein
Tssr143851 17 33928155 to 33928250 95 + TSS region transcription start site region 143851
Tssr147472 17 33928200 to 33928236 36 - TSS region transcription start site region 147472
Tssr143852 17 33928270 to 33928301 31 + TSS region transcription start site region 143852
Tssr143853 17 33928475 to 33928477 2 + TSS region transcription start site region 143853
Cpgi9015 17 33928875 to 33930716 1841 CpG island CpG island 9015
Tssr147473 17 33929288 to 33929293 5 - TSS region transcription start site region 147473
Tssr143854 17 33929514 to 33929586 72 + TSS region transcription start site region 143854
Rgl2 17 33929543 to 33937687 8144 + protein coding gene ral guanine nucleotide dissociation stimulator-like 2
Tssr143855 17 33929894 to 33929917 23 + TSS region transcription start site region 143855
Tssr143856 17 33929960 to 33929998 38 + TSS region transcription start site region 143856
Tssr147474 17 33930733 to 33930757 24 - TSS region transcription start site region 147474
Tssr143857 17 33930846 to 33930930 84 + TSS region transcription start site region 143857
Tssr147475 17 33931071 to 33931096 25 - TSS region transcription start site region 147475
Tssr143858 17 33931161 to 33931201 40 + TSS region transcription start site region 143858
Tssr143859 17 33931359 to 33931373 14 + TSS region transcription start site region 143859
Tssr143860 17 33935199 to 33935213 14 + TSS region transcription start site region 143860
Tssr143861 17 33936614 to 33936618 4 + TSS region transcription start site region 143861
Pfdn6 17 33938909 to 33940343 1434 - protein coding gene prefoldin subunit 6
Gm50037 17 33939069 to 33939424 355 + antisense lncRNA gene predicted gene, 50037
Cpgi9016 17 33939753 to 33941539 1786 CpG island CpG island 9016
Tssr147476 17 33940289 to 33940296 7 - TSS region transcription start site region 147476
Tssr147477 17 33940299 to 33940342 43 - TSS region transcription start site region 147477
Wdr46 17 33940660 to 33949697 9037 + protein coding gene WD repeat domain 46
Tssr143862 17 33940661 to 33940709 48 + TSS region transcription start site region 143862
Tssr143863 17 33940715 to 33940729 14 + TSS region transcription start site region 143863
Tssr143864 17 33941238 to 33941280 42 + TSS region transcription start site region 143864
Tssr143865 17 33947980 to 33948008 28 + TSS region transcription start site region 143865
Tssr143866 17 33949254 to 33949296 42 + TSS region transcription start site region 143866
Tssr143867 17 33949412 to 33949424 12 + TSS region transcription start site region 143867
Tssr143868 17 33949486 to 33949535 49 + TSS region transcription start site region 143868
B3galt4 17 33949912 to 33951488 1576 - protein coding gene UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4
Cpgi9017 17 33950911 to 33951704 793 CpG island CpG island 9017
Tssr147478 17 33951046 to 33951064 18 - TSS region transcription start site region 147478
Tssr147479 17 33951079 to 33951123 44 - TSS region transcription start site region 147479
Tssr147480 17 33951438 to 33951493 55 - TSS region transcription start site region 147480
Tssr143869 17 33951520 to 33951527 7 + TSS region transcription start site region 143869
Tssr147481 17 33951716 to 33951728 12 - TSS region transcription start site region 147481
Tssr147482 17 33951772 to 33951786 14 - TSS region transcription start site region 147482
Tssr147483 17 33951791 to 33951803 12 - TSS region transcription start site region 147483
Rps18 17 33951999 to 33955641 3642 - protein coding gene ribosomal protein S18
Cpgi9018 17 33955175 to 33956373 1198 CpG island CpG island 9018
Tssr147484 17 33955658 to 33955686 28 - TSS region transcription start site region 147484
Vps52 17 33955785 to 33966495 10710 + protein coding gene VPS52 GARP complex subunit
Tssr143870 17 33955808 to 33955819 11 + TSS region transcription start site region 143870
Tssr143871 17 33955823 to 33955901 78 + TSS region transcription start site region 143871
Tssr143872 17 33955902 to 33955926 24 + TSS region transcription start site region 143872
Tssr143873 17 33956067 to 33956108 41 + TSS region transcription start site region 143873
Gm23111 17 33959663 to 33959767 104 + snRNA gene predicted gene, 23111
H2-K2 17 33974831 to 33978790 3959 - pseudogene histocompatibility 2, K region locus 2
Tssr143874 17 33974994 to 33975021 27 + TSS region transcription start site region 143874
Tssr147485 17 33975031 to 33975055 24 - TSS region transcription start site region 147485
Tssr143875 17 33975480 to 33975497 17 + TSS region transcription start site region 143875
Tssr147486 17 33975517 to 33975537 20 - TSS region transcription start site region 147486
Cpgi9019 17 33977772 to 33978978 1206 CpG island CpG island 9019
Tssr147487 17 33978454 to 33978480 26 - TSS region transcription start site region 147487
Tssr147488 17 33978737 to 33978739 2 - TSS region transcription start site region 147488
Tssr147489 17 33978782 to 33978841 59 - TSS region transcription start site region 147489
Tssr147490 17 33978853 to 33978860 7 - TSS region transcription start site region 147490
Gm4152 17 33980486 to 33980744 258 - pseudogene predicted gene 4152
Cpgi9020 17 33981358 to 33981688 330 CpG island CpG island 9020
AA388235 17 33981492 to 33985358 3866 + lncRNA gene expressed sequence AA388235
Tssr143876 17 33996013 to 33996040 27 + TSS region transcription start site region 143876
H2-K1 17 33996017 to 34000333 4316 - protein coding gene histocompatibility 2, K1, K region
Tssr143877 17 33996175 to 33996331 156 + TSS region transcription start site region 143877
Tssr147491 17 33996189 to 33996248 59 - TSS region transcription start site region 147491
Tssr147492 17 33996286 to 33996367 81 - TSS region transcription start site region 147492
Tssr147493 17 33996384 to 33996430 46 - TSS region transcription start site region 147493
Tssr143878 17 33996393 to 33996419 26 + TSS region transcription start site region 143878
Tssr147494 17 33996488 to 33996499 11 - TSS region transcription start site region 147494
Tssr143879 17 33997023 to 33997053 30 + TSS region transcription start site region 143879
Tssr143880 17 33997059 to 33997071 12 + TSS region transcription start site region 143880
Tssr147495 17 33997061 to 33997127 66 - TSS region transcription start site region 147495
Tssr143881 17 33997494 to 33997537 43 + TSS region transcription start site region 143881
Tssr147496 17 33998975 to 33998996 21 - TSS region transcription start site region 147496
Cpgi9021 17 33999140 to 34000760 1620 CpG island CpG island 9021
Tssr147497 17 33999466 to 33999487 21 - TSS region transcription start site region 147497
Tssr147498 17 33999490 to 33999508 18 - TSS region transcription start site region 147498
Tssr143882 17 33999763 to 33999775 12 + TSS region transcription start site region 143882
Tssr147499 17 33999792 to 33999802 10 - TSS region transcription start site region 147499
Tssr147500 17 33999923 to 33999957 34 - TSS region transcription start site region 147500
Tssr147501 17 33999965 to 34000003 38 - TSS region transcription start site region 147501
Tssr147502 17 34000248 to 34000268 20 - TSS region transcription start site region 147502
Tssr147503 17 34000276 to 34000290 14 - TSS region transcription start site region 147503
Gm41575 17 34000290 to 34003190 2900 + lncRNA gene predicted gene, 41575
Tssr147504 17 34000300 to 34000318 18 - TSS region transcription start site region 147504
Tssr147505 17 34000328 to 34000338 10 - TSS region transcription start site region 147505
Sles1 17 34000916 to 34956961 956045 QTL systemic lupus erythmatosus suppressor 1
D17Mit28 17 34000916 to 34001035 119 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 28
Gm31082 17 34003191 to 34019784 16593 - lncRNA gene predicted gene, 31082
Gm7326 17 34017060 to 34017881 821 + pseudogene predicted gene 7326
Ring1 17 34020792 to 34024680 3888 - protein coding gene ring finger protein 1
Cpgi9022 17 34024218 to 34025575 1357 CpG island CpG island 9022
Tssr147506 17 34024639 to 34024676 37 - TSS region transcription start site region 147506
Gm26940 17 34024966 to 34025070 104 - lincRNA gene predicted gene, 26940
Mir219a-1 17 34024983 to 34025092 109 - miRNA gene microRNA 219a-1
Mir219c 17 34025012 to 34025071 59 + miRNA gene microRNA 219c
Tssr147507 17 34025486 to 34025513 27 - TSS region transcription start site region 147507
H2-Ke6 17 34026033 to 34028055 2022 - protein coding gene H2-K region expressed gene 6
Gm20427 17 34026034 to 34031572 5538 - unclassified non-coding RNA gene predicted gene 20427
Cpgi9023 17 34027009 to 34028298 1289 CpG island CpG island 9023
Tssr147508 17 34028003 to 34028006 3 - TSS region transcription start site region 147508
Tssr147509 17 34028016 to 34028023 7 - TSS region transcription start site region 147509
Tssr147510 17 34028044 to 34028076 32 - TSS region transcription start site region 147510
Slc39a7 17 34028267 to 34031690 3423 - protein coding gene solute carrier family 39 (zinc transporter), member 7