Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:33870785-34051495

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smim40-ps 17 33873837 to 33874082 245 + pseudogene small integral membrane protein 40, pseudogene
Kifc1 17 33875664 to 33890633 14969 - protein coding gene kinesin family member C1
Gm27740 17 33886676 to 33886733 57 - miRNA gene predicted gene, 27740
Cpgi9009 17 33890052 to 33891100 1048 CpG island CpG island 9009
Tssr147462 17 33890544 to 33890560 16 - TSS region transcription start site region 147462
Tssr147463 17 33890584 to 33890652 68 - TSS region transcription start site region 147463
Tssr143805 17 33893192 to 33893220 28 + TSS region transcription start site region 143805
Tssr147464 17 33904050 to 33904067 17 - TSS region transcription start site region 147464
Tssr143806 17 33905102 to 33905116 14 + TSS region transcription start site region 143806
Smim40 17 33905135 to 33906675 1540 + lincRNA gene small integral membrane protein 40
BC051226 17 33908182 to 33909178 996 - antisense lncRNA gene cDNA sequence BC051226
Tssr143807 17 33908392 to 33908410 18 + TSS region transcription start site region 143807
Cpgi9010 17 33908448 to 33910109 1661 CpG island CpG island 9010
Tssr147465 17 33909143 to 33909157 14 - TSS region transcription start site region 147465
Tssr147466 17 33909164 to 33909187 23 - TSS region transcription start site region 147466
Tssr147467 17 33909195 to 33909246 51 - TSS region transcription start site region 147467
Tssr147468 17 33909289 to 33909326 37 - TSS region transcription start site region 147468
Tssr143808 17 33909409 to 33909429 20 + TSS region transcription start site region 143808
Daxx 17 33909414 to 33915590 6176 + protein coding gene Fas death domain-associated protein
Tssr143809 17 33909481 to 33909576 95 + TSS region transcription start site region 143809
Tssr143810 17 33909577 to 33909600 23 + TSS region transcription start site region 143810
Tssr143811 17 33909603 to 33909612 9 + TSS region transcription start site region 143811
Tssr143812 17 33909622 to 33909643 21 + TSS region transcription start site region 143812
Tssr147469 17 33910120 to 33910147 27 - TSS region transcription start site region 147469
Tssr143813 17 33910246 to 33910261 15 + TSS region transcription start site region 143813
Tssr143814 17 33910317 to 33910335 18 + TSS region transcription start site region 143814
Tssr143815 17 33910391 to 33910418 27 + TSS region transcription start site region 143815
Tssr143816 17 33910423 to 33910445 22 + TSS region transcription start site region 143816
Tssr143817 17 33911491 to 33911536 45 + TSS region transcription start site region 143817
Tssr143818 17 33911984 to 33911999 15 + TSS region transcription start site region 143818
Tssr143819 17 33912722 to 33912726 4 + TSS region transcription start site region 143819
Cpgi9011 17 33915868 to 33916430 562 CpG island CpG island 9011
Tssr143820 17 33915905 to 33915916 11 + TSS region transcription start site region 143820
Zbtb22 17 33916176 to 33919325 3149 + protein coding gene zinc finger and BTB domain containing 22
Tssr143821 17 33916182 to 33916196 14 + TSS region transcription start site region 143821
Cpgi9012 17 33917058 to 33917253 195 CpG island CpG island 9012
Cpgi9013 17 33918340 to 33918938 598 CpG island CpG island 9013
Tssr143822 17 33919056 to 33919063 7 + TSS region transcription start site region 143822
Gm19412 17 33919279 to 33920485 1206 - antisense lncRNA gene predicted gene, 19412
Cpgi9014 17 33919375 to 33920606 1231 CpG island CpG island 9014
Tssr143823 17 33919470 to 33919477 7 + TSS region transcription start site region 143823
Tapbp 17 33919478 to 33929290 9812 + protein coding gene TAP binding protein
Tssr143824 17 33919486 to 33919498 12 + TSS region transcription start site region 143824
Tssr143825 17 33919563 to 33919579 16 + TSS region transcription start site region 143825
Tssr143826 17 33919597 to 33919617 20 + TSS region transcription start site region 143826
Tssr143827 17 33919619 to 33919628 9 + TSS region transcription start site region 143827
Tssr143828 17 33919645 to 33919676 31 + TSS region transcription start site region 143828
Tssr143829 17 33919679 to 33919690 11 + TSS region transcription start site region 143829
Tssr143830 17 33919725 to 33919736 11 + TSS region transcription start site region 143830
Tssr143831 17 33919827 to 33919833 6 + TSS region transcription start site region 143831
Tssr143832 17 33919862 to 33919877 15 + TSS region transcription start site region 143832
Tssr143833 17 33920242 to 33920337 95 + TSS region transcription start site region 143833
Tssr147470 17 33920343 to 33920372 29 - TSS region transcription start site region 147470
Tssr143834 17 33920398 to 33920414 16 + TSS region transcription start site region 143834
Tssr147471 17 33920470 to 33920500 30 - TSS region transcription start site region 147471
Tssr143835 17 33920490 to 33920514 24 + TSS region transcription start site region 143835
Tssr143836 17 33920522 to 33920554 32 + TSS region transcription start site region 143836
Tssr143837 17 33922804 to 33922852 48 + TSS region transcription start site region 143837
Tssr143838 17 33925400 to 33925445 45 + TSS region transcription start site region 143838
Tssr143839 17 33925469 to 33925491 22 + TSS region transcription start site region 143839
Tssr143840 17 33925695 to 33925710 15 + TSS region transcription start site region 143840
Tssr143841 17 33925732 to 33925764 32 + TSS region transcription start site region 143841
Tssr143842 17 33925992 to 33926029 37 + TSS region transcription start site region 143842
Tssr143843 17 33926165 to 33926191 26 + TSS region transcription start site region 143843
Tssr143844 17 33926265 to 33926279 14 + TSS region transcription start site region 143844
Tssr143845 17 33926312 to 33926326 14 + TSS region transcription start site region 143845
Tssr143846 17 33926411 to 33926414 3 + TSS region transcription start site region 143846
Tssr143847 17 33926417 to 33926429 12 + TSS region transcription start site region 143847
Tssr143848 17 33926449 to 33926467 18 + TSS region transcription start site region 143848
Tssr143849 17 33926619 to 33926637 18 + TSS region transcription start site region 143849
Tssr143850 17 33926657 to 33926676 19 + TSS region transcription start site region 143850
Tssr143851 17 33928155 to 33928250 95 + TSS region transcription start site region 143851
Tssr147472 17 33928200 to 33928236 36 - TSS region transcription start site region 147472
Tssr143852 17 33928270 to 33928301 31 + TSS region transcription start site region 143852
Tssr143853 17 33928475 to 33928477 2 + TSS region transcription start site region 143853
Cpgi9015 17 33928875 to 33930716 1841 CpG island CpG island 9015
Tssr147473 17 33929288 to 33929293 5 - TSS region transcription start site region 147473
Tssr143854 17 33929514 to 33929586 72 + TSS region transcription start site region 143854
Rgl2 17 33929543 to 33937687 8144 + protein coding gene ral guanine nucleotide dissociation stimulator-like 2
Tssr143855 17 33929894 to 33929917 23 + TSS region transcription start site region 143855
Tssr143856 17 33929960 to 33929998 38 + TSS region transcription start site region 143856
Tssr147474 17 33930733 to 33930757 24 - TSS region transcription start site region 147474
Tssr143857 17 33930846 to 33930930 84 + TSS region transcription start site region 143857
Tssr147475 17 33931071 to 33931096 25 - TSS region transcription start site region 147475
Tssr143858 17 33931161 to 33931201 40 + TSS region transcription start site region 143858
Tssr143859 17 33931359 to 33931373 14 + TSS region transcription start site region 143859
Tssr143860 17 33935199 to 33935213 14 + TSS region transcription start site region 143860
Tssr143861 17 33936614 to 33936618 4 + TSS region transcription start site region 143861
Pfdn6 17 33938909 to 33940343 1434 - protein coding gene prefoldin subunit 6
Gm50037 17 33939069 to 33939424 355 + antisense lncRNA gene predicted gene, 50037
Cpgi9016 17 33939753 to 33941539 1786 CpG island CpG island 9016
Tssr147476 17 33940289 to 33940296 7 - TSS region transcription start site region 147476
Tssr147477 17 33940299 to 33940342 43 - TSS region transcription start site region 147477
Wdr46 17 33940660 to 33949697 9037 + protein coding gene WD repeat domain 46
Tssr143862 17 33940661 to 33940709 48 + TSS region transcription start site region 143862
Tssr143863 17 33940715 to 33940729 14 + TSS region transcription start site region 143863
Tssr143864 17 33941238 to 33941280 42 + TSS region transcription start site region 143864
Tssr143865 17 33947980 to 33948008 28 + TSS region transcription start site region 143865
Tssr143866 17 33949254 to 33949296 42 + TSS region transcription start site region 143866
Tssr143867 17 33949412 to 33949424 12 + TSS region transcription start site region 143867
Tssr143868 17 33949486 to 33949535 49 + TSS region transcription start site region 143868
B3galt4 17 33949912 to 33951488 1576 - protein coding gene UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4
Cpgi9017 17 33950911 to 33951704 793 CpG island CpG island 9017
Tssr147478 17 33951046 to 33951064 18 - TSS region transcription start site region 147478
Tssr147479 17 33951079 to 33951123 44 - TSS region transcription start site region 147479
Tssr147480 17 33951438 to 33951493 55 - TSS region transcription start site region 147480
Tssr143869 17 33951520 to 33951527 7 + TSS region transcription start site region 143869
Tssr147481 17 33951716 to 33951728 12 - TSS region transcription start site region 147481
Tssr147482 17 33951772 to 33951786 14 - TSS region transcription start site region 147482
Tssr147483 17 33951791 to 33951803 12 - TSS region transcription start site region 147483
Rps18 17 33951999 to 33955641 3642 - protein coding gene ribosomal protein S18
Cpgi9018 17 33955175 to 33956373 1198 CpG island CpG island 9018
Tssr147484 17 33955658 to 33955686 28 - TSS region transcription start site region 147484
Vps52 17 33955785 to 33966495 10710 + protein coding gene VPS52 GARP complex subunit
Tssr143870 17 33955808 to 33955819 11 + TSS region transcription start site region 143870
Tssr143871 17 33955823 to 33955901 78 + TSS region transcription start site region 143871
Tssr143872 17 33955902 to 33955926 24 + TSS region transcription start site region 143872
Tssr143873 17 33956067 to 33956108 41 + TSS region transcription start site region 143873
Gm23111 17 33959663 to 33959767 104 + snRNA gene predicted gene, 23111
H2-K2 17 33974831 to 33978790 3959 - pseudogene histocompatibility 2, K region locus 2
Tssr143874 17 33974994 to 33975021 27 + TSS region transcription start site region 143874
Tssr147485 17 33975031 to 33975055 24 - TSS region transcription start site region 147485
Tssr143875 17 33975480 to 33975497 17 + TSS region transcription start site region 143875
Tssr147486 17 33975517 to 33975537 20 - TSS region transcription start site region 147486
Cpgi9019 17 33977772 to 33978978 1206 CpG island CpG island 9019
Tssr147487 17 33978454 to 33978480 26 - TSS region transcription start site region 147487
Tssr147488 17 33978737 to 33978739 2 - TSS region transcription start site region 147488
Tssr147489 17 33978782 to 33978841 59 - TSS region transcription start site region 147489
Tssr147490 17 33978853 to 33978860 7 - TSS region transcription start site region 147490
Gm4152 17 33980486 to 33980744 258 - pseudogene predicted gene 4152
Cpgi9020 17 33981358 to 33981688 330 CpG island CpG island 9020
AA388235 17 33981492 to 33985358 3866 + lncRNA gene expressed sequence AA388235
Tssr143876 17 33996013 to 33996040 27 + TSS region transcription start site region 143876
H2-K1 17 33996017 to 34000333 4316 - protein coding gene histocompatibility 2, K1, K region
Tssr143877 17 33996175 to 33996331 156 + TSS region transcription start site region 143877
Tssr147491 17 33996189 to 33996248 59 - TSS region transcription start site region 147491
Tssr147492 17 33996286 to 33996367 81 - TSS region transcription start site region 147492
Tssr147493 17 33996384 to 33996430 46 - TSS region transcription start site region 147493
Tssr143878 17 33996393 to 33996419 26 + TSS region transcription start site region 143878
Tssr147494 17 33996488 to 33996499 11 - TSS region transcription start site region 147494
Tssr143879 17 33997023 to 33997053 30 + TSS region transcription start site region 143879
Tssr143880 17 33997059 to 33997071 12 + TSS region transcription start site region 143880
Tssr147495 17 33997061 to 33997127 66 - TSS region transcription start site region 147495
Tssr143881 17 33997494 to 33997537 43 + TSS region transcription start site region 143881
Tssr147496 17 33998975 to 33998996 21 - TSS region transcription start site region 147496
Cpgi9021 17 33999140 to 34000760 1620 CpG island CpG island 9021
Tssr147497 17 33999466 to 33999487 21 - TSS region transcription start site region 147497
Tssr147498 17 33999490 to 33999508 18 - TSS region transcription start site region 147498
Tssr143882 17 33999763 to 33999775 12 + TSS region transcription start site region 143882
Tssr147499 17 33999792 to 33999802 10 - TSS region transcription start site region 147499
Tssr147500 17 33999923 to 33999957 34 - TSS region transcription start site region 147500
Tssr147501 17 33999965 to 34000003 38 - TSS region transcription start site region 147501
Tssr147502 17 34000248 to 34000268 20 - TSS region transcription start site region 147502
Tssr147503 17 34000276 to 34000290 14 - TSS region transcription start site region 147503
Gm41575 17 34000290 to 34003190 2900 + lncRNA gene predicted gene, 41575
Tssr147504 17 34000300 to 34000318 18 - TSS region transcription start site region 147504
Tssr147505 17 34000328 to 34000338 10 - TSS region transcription start site region 147505
D17Mit28 17 34000916 to 34001035 119 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 28
Sles1 17 34000916 to 34956961 956045 QTL systemic lupus erythmatosus suppressor 1
Gm31082 17 34003191 to 34019784 16593 - lncRNA gene predicted gene, 31082
Gm7326 17 34017060 to 34017881 821 + pseudogene predicted gene 7326
Ring1 17 34020792 to 34024680 3888 - protein coding gene ring finger protein 1
Cpgi9022 17 34024218 to 34025575 1357 CpG island CpG island 9022
Tssr147506 17 34024639 to 34024676 37 - TSS region transcription start site region 147506
Gm26940 17 34024966 to 34025070 104 - lincRNA gene predicted gene, 26940
Mir219a-1 17 34024983 to 34025092 109 - miRNA gene microRNA 219a-1
Mir219c 17 34025012 to 34025071 59 + miRNA gene microRNA 219c
Tssr147507 17 34025486 to 34025513 27 - TSS region transcription start site region 147507
H2-Ke6 17 34026033 to 34028055 2022 - protein coding gene H2-K region expressed gene 6
Gm20427 17 34026034 to 34031572 5538 - unclassified non-coding RNA gene predicted gene 20427
Cpgi9023 17 34027009 to 34028298 1289 CpG island CpG island 9023
Tssr147508 17 34028003 to 34028006 3 - TSS region transcription start site region 147508
Tssr147509 17 34028016 to 34028023 7 - TSS region transcription start site region 147509
Tssr147510 17 34028044 to 34028076 32 - TSS region transcription start site region 147510
Slc39a7 17 34028267 to 34031690 3423 - protein coding gene solute carrier family 39 (zinc transporter), member 7
Cpgi9024 17 34030979 to 34033046 2067 CpG island CpG island 9024
Tssr147511 17 34031556 to 34031634 78 - TSS region transcription start site region 147511
Tssr147512 17 34031644 to 34031667 23 - TSS region transcription start site region 147512
Tssr147513 17 34031671 to 34031674 3 - TSS region transcription start site region 147513
Tssr147514 17 34031684 to 34031699 15 - TSS region transcription start site region 147514
Tssr143883 17 34031787 to 34031821 34 + TSS region transcription start site region 143883
Rxrb 17 34031812 to 34038393 6581 + protein coding gene retinoid X receptor beta
Tssr147515 17 34032045 to 34032061 16 - TSS region transcription start site region 147515
Tssr143884 17 34032071 to 34032123 52 + TSS region transcription start site region 143884
Tssr143885 17 34032348 to 34032375 27 + TSS region transcription start site region 143885
Cpgi9025 17 34038544 to 34039117 573 CpG island CpG island 9025
Tssr143886 17 34039141 to 34039153 12 + TSS region transcription start site region 143886
Tssr143887 17 34039166 to 34039182 16 + TSS region transcription start site region 143887
Tssr143888 17 34039228 to 34039255 27 + TSS region transcription start site region 143888
Tssr5090 17 34039297 to 34039306 9 + TSS region transcription start site region 5090
Tssr5091 17 34039334 to 34039344 10 + TSS region transcription start site region 5091
Col11a2 17 34039437 to 34066685 27248 + protein coding gene collagen, type XI, alpha 2
Tssr143889 17 34039462 to 34039481 19 + TSS region transcription start site region 143889
Cpgi9026 17 34039474 to 34039674 200 CpG island CpG island 9026
Tssr143890 17 34048398 to 34048411 13 + TSS region transcription start site region 143890
Tssr143891 17 34048417 to 34048425 8 + TSS region transcription start site region 143891
Tssr143892 17 34048433 to 34048438 5 + TSS region transcription start site region 143892
Tssr143893 17 34048444 to 34048456 12 + TSS region transcription start site region 143893