Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:3259615-6761434

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324 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49797 17 3198110 to 3311120 113010 + lincRNA gene predicted gene, 49797
Gm34035 17 3270681 to 3283270 12589 - lincRNA gene predicted gene, 34035
Tssr146282 17 3283165 to 3283178 13 - TSS region transcription start site region 146282
Tssr146283 17 3283186 to 3283197 11 - TSS region transcription start site region 146283
Tssr146284 17 3283244 to 3283267 23 - TSS region transcription start site region 146284
Tssr146285 17 3283276 to 3283284 8 - TSS region transcription start site region 146285
Gm6475 17 3312250 to 3314185 1935 - pseudogene predicted gene 6475
Cpgi8545 17 3313922 to 3314826 904 CpG island CpG island 8545
Tssr146286 17 3314177 to 3314221 44 - TSS region transcription start site region 146286
Cpgi8546 17 3325199 to 3325520 321 CpG island CpG island 8546
D17Brg11 17 3325211 to 3325491 280 DNA segment DNA segment, Chr 17, David E. Bergstrom 11
Cpgi8547 17 3326057 to 3327344 1287 CpG island CpG island 8547
Tiam2 17 3326296 to 3519397 193101 + protein coding gene T cell lymphoma invasion and metastasis 2
Tssr142359 17 3326552 to 3326585 33 + TSS region transcription start site region 142359
Tssr142360 17 3326586 to 3326595 9 + TSS region transcription start site region 142360
Tssr142361 17 3326677 to 3326684 7 + TSS region transcription start site region 142361
Gm49221 17 3346711 to 3347067 356 - pseudogene predicted gene, 49221
D17Mit267 17 3354862 to 3355007 145 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-267
Tssr142362 17 3397189 to 3397204 15 + TSS region transcription start site region 142362
Tssr142363 17 3397220 to 3397242 22 + TSS region transcription start site region 142363
Tssr4981 17 3410941 to 3410944 3 + TSS region transcription start site region 4981
Cpgi8548 17 3414562 to 3414746 184 CpG island CpG island 8548
D17Brg18 17 3431185 to 3431485 300 DNA segment DNA segment, Chr 17, David E. Bergstrom 18
Tssr142364 17 3453215 to 3453226 11 + TSS region transcription start site region 142364
Tssr142365 17 3453229 to 3453244 15 + TSS region transcription start site region 142365
Tssr142366 17 3453255 to 3453276 21 + TSS region transcription start site region 142366
Tssr142367 17 3454238 to 3454253 15 + TSS region transcription start site region 142367
Gm7043 17 3461804 to 3462332 528 - pseudogene predicted gene 7043
Tssr146287 17 3462365 to 3462373 8 - TSS region transcription start site region 146287
Tssr142368 17 3463010 to 3463040 30 + TSS region transcription start site region 142368
D17Brg19 17 3478791 to 3479159 368 DNA segment DNA segment, Chr 17, David E. Bergstrom 19
Tssr142369 17 3482180 to 3482187 7 + TSS region transcription start site region 142369
Tssr142370 17 3482244 to 3482255 11 + TSS region transcription start site region 142370
Tssr142371 17 3482467 to 3482489 22 + TSS region transcription start site region 142371
Tfb1m 17 3519256 to 3557777 38521 - protein coding gene transcription factor B1, mitochondrial
Cldn20 17 3532554 to 3533213 659 + protein coding gene claudin 20
Cpgi8549 17 3557207 to 3557967 760 CpG island CpG island 8549
Tssr142372 17 3557452 to 3557462 10 + TSS region transcription start site region 142372
Tssr142373 17 3557521 to 3557578 57 + TSS region transcription start site region 142373
Tssr146288 17 3557718 to 3557733 15 - TSS region transcription start site region 146288
Tssr146289 17 3557742 to 3557775 33 - TSS region transcription start site region 146289
Tssr146290 17 3557785 to 3557797 12 - TSS region transcription start site region 146290
Tssr146291 17 3557813 to 3557824 11 - TSS region transcription start site region 146291
1700102H20Rik 17 3557824 to 3559862 2038 + lincRNA gene RIKEN cDNA 1700102H20 gene
Tssr4982 17 3557834 to 3557838 4 - TSS region transcription start site region 4982
Tssr142374 17 3557847 to 3557877 30 + TSS region transcription start site region 142374
Tssr142375 17 3558097 to 3558112 15 + TSS region transcription start site region 142375
Gm34155 17 3562349 to 3577325 14976 + lncRNA gene predicted gene, 34155
D17Mit268 17 3618921 to 3619065 144 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-268
Nox3 17 3635240 to 3696261 61021 - protein coding gene NADPH oxidase 3
D17Brg22 17 3644234 to 3644449 215 DNA segment DNA segment, Chr 17, David E. Bergstrom 22
D17Brg23 17 3657357 to 3657575 218 DNA segment DNA segment, Chr 17, David E. Bergstrom 23
Tssr146292 17 3663562 to 3663567 5 - TSS region transcription start site region 146292
Gm34208 17 3663658 to 3671660 8002 + lncRNA gene predicted gene, 34208
D17Brg119 17 3719719 to 3719902 183 DNA segment DNA segment, Chr 17, David E. Bergstrom 119
D17Brg120 17 3732913 to 3733073 160 DNA segment DNA segment, Chr 17, David E. Bergstrom 120
D17Brg29 17 3792598 to 3792802 204 DNA segment DNA segment, Chr 17, David E. Bergstrom 29
D17Brg30 17 3812010 to 3812221 211 DNA segment DNA segment, Chr 17, David E. Bergstrom 30
Cpgi8550 17 3878879 to 3879130 251 CpG island CpG island 8550
l17J2 17 3924615 to 6096434 2171819 heritable phenotypic marker lethal, Chr 17, Jackson 2
Vtbt18 17 3924615 to 3924747 132 QTL vertebral trabecular bone trait 18
Bhr3 17 3924615 to 48559063 44634448 QTL bronchial hyperresponsiveness 3
D17Mit164 17 3924615 to 3924747 132 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 164
Myaa1 17 3924615 to 3924747 132 QTL modifier of Yaa 1
l17J1 17 3924615 to 6096434 2171819 heritable phenotypic marker lethal, Chr 17, Jackson 1
Tssr146293 17 4030939 to 4030944 5 - TSS region transcription start site region 146293
4930470H14Rik 17 4044658 to 4082995 38337 - lincRNA gene RIKEN cDNA 4930470H14 gene
4930548J01Rik 17 4119446 to 4122102 2656 - lncRNA gene RIKEN cDNA 4930548J01 gene
Tssr146294 17 4122088 to 4122137 49 - TSS region transcription start site region 146294
D17Brg198 17 4158105 to 4158283 178 DNA segment DNA segment, Chr 17, David E. Bergstrom 198
D17Brg199 17 4174576 to 4174753 177 DNA segment DNA segment, Chr 17, David E. Bergstrom 199
Gm41516 17 4186468 to 4192986 6518 - lncRNA gene predicted gene, 41516
Tssr4983 17 4196914 to 4196933 19 - TSS region transcription start site region 4983
D17Brg125 17 4281244 to 4281434 190 DNA segment DNA segment, Chr 17, David E. Bergstrom 125
Tssr146295 17 4281603 to 4281612 9 - TSS region transcription start site region 146295
D17Brg140 17 4415582 to 4415769 187 DNA segment DNA segment, Chr 17, David E. Bergstrom 140
D17Brg152 17 4518444 to 4518633 189 DNA segment DNA segment, Chr 17, David E. Bergstrom 152
D17Brg153 17 4527153 to 4527324 171 DNA segment DNA segment, Chr 17, David E. Bergstrom 153
Gm34259 17 4612379 to 4633520 21141 + lncRNA gene predicted gene, 34259
4930517M08Rik 17 4634978 to 4637471 2493 + lincRNA gene RIKEN cDNA 4930517M08 gene
Gm23186 17 4678020 to 4678126 106 + snRNA gene predicted gene, 23186
D17Mit223 17 4780494 to 4780618 124 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 223
Gm49780 17 4792646 to 4792959 313 - pseudogene predicted gene, 49780
Gm34371 17 4794550 to 4797430 2880 + lncRNA gene predicted gene, 34371
Tssr142376 17 4794686 to 4794698 12 + TSS region transcription start site region 142376
Tssr142377 17 4794704 to 4794727 23 + TSS region transcription start site region 142377
Tfv1 17 4804477 to 65330362 60525885 QTL total food volume 1
D17Mit19 17 4804477 to 4804658 181 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 19
4930579D07Rik 17 4851698 to 4892987 41289 - lincRNA gene RIKEN cDNA 4930579D07 gene
Cpgi8551 17 4854106 to 4854336 230 CpG island CpG island 8551
Tssr142378 17 4880579 to 4880581 2 + TSS region transcription start site region 142378
Gm4828 17 4880626 to 4881115 489 + pseudogene predicted gene 4828
Cpgi8552 17 4907893 to 4908850 957 CpG island CpG island 8552
Gm34507 17 4908010 to 4914351 6341 + protein coding gene predicted gene, 34507
Tssr146296 17 4908539 to 4908571 32 - TSS region transcription start site region 146296
Gm41517 17 4945152 to 4946814 1662 - lincRNA gene predicted gene, 41517
Gm34625 17 4954198 to 4960852 6654 + lncRNA gene predicted gene, 34625
Cpgi8553 17 4993726 to 4996994 3268 CpG island CpG island 8553
Tssr142379 17 4994286 to 4994373 87 + TSS region transcription start site region 142379
Arid1b 17 4994332 to 5347656 353324 + protein coding gene AT rich interactive domain 1B (SWI-like)
Tssr142380 17 4994491 to 4994531 40 + TSS region transcription start site region 142380
Tssr4984 17 4994612 to 4994658 46 + TSS region transcription start site region 4984
Tssr142381 17 4994697 to 4994730 33 + TSS region transcription start site region 142381
Tssr142382 17 4994904 to 4994953 49 + TSS region transcription start site region 142382
Tssr142383 17 4995664 to 4995693 29 + TSS region transcription start site region 142383
Tssr142384 17 4995902 to 4995959 57 + TSS region transcription start site region 142384
Tssr142385 17 4995982 to 4995989 7 + TSS region transcription start site region 142385
Tssr142386 17 5000550 to 5000553 3 + TSS region transcription start site region 142386
Tssr142387 17 5012808 to 5012832 24 + TSS region transcription start site region 142387
Tssr142388 17 5012841 to 5012852 11 + TSS region transcription start site region 142388
Tssr142389 17 5057966 to 5057969 3 + TSS region transcription start site region 142389
Tssr146297 17 5058488 to 5058503 15 - TSS region transcription start site region 146297
D17Jcs97 17 5069733 to 5069942 209 DNA segment DNA segment, Chr 17, John C. Schimenti 97
Tssr142390 17 5072989 to 5072992 3 + TSS region transcription start site region 142390
Tssr142391 17 5089896 to 5089901 5 + TSS region transcription start site region 142391
Tssr142392 17 5090081 to 5090122 41 + TSS region transcription start site region 142392
Cpgi8554 17 5091498 to 5091697 199 CpG island CpG island 8554
Tssr142393 17 5103243 to 5103248 5 + TSS region transcription start site region 142393
Gm15599 17 5110766 to 5112110 1344 - pseudogene predicted gene 15599
Tssr142394 17 5134934 to 5134938 4 + TSS region transcription start site region 142394
Tssr142395 17 5152647 to 5152658 11 + TSS region transcription start site region 142395
Tssr142396 17 5160946 to 5160950 4 + TSS region transcription start site region 142396
Cpgi8555 17 5189663 to 5190103 440 CpG island CpG island 8555
Tssr142397 17 5189899 to 5189917 18 + TSS region transcription start site region 142397
Tssr142398 17 5195701 to 5195737 36 + TSS region transcription start site region 142398
Gm34854 17 5196277 to 5217166 20889 - lncRNA gene predicted gene, 34854
Tssr146298 17 5217279 to 5217309 30 - TSS region transcription start site region 146298
Tssr142399 17 5227897 to 5227898 1 + TSS region transcription start site region 142399
Tssr142400 17 5242990 to 5242999 9 + TSS region transcription start site region 142400
Tssr142401 17 5278453 to 5278464 11 + TSS region transcription start site region 142401
Tssr142402 17 5278502 to 5278507 5 + TSS region transcription start site region 142402
Tssr142403 17 5324960 to 5324965 5 + TSS region transcription start site region 142403
Tssr142404 17 5332544 to 5332582 38 + TSS region transcription start site region 142404
Tssr142405 17 5334822 to 5334831 9 + TSS region transcription start site region 142405
Tssr142406 17 5334837 to 5334850 13 + TSS region transcription start site region 142406
Tssr142407 17 5336670 to 5336684 14 + TSS region transcription start site region 142407
Cpgi8556 17 5341860 to 5342748 888 CpG island CpG island 8556
Tssr142408 17 5343972 to 5343978 6 + TSS region transcription start site region 142408
Cpgi8557 17 5397324 to 5397987 663 CpG island CpG island 8557
Tssr142409 17 5401007 to 5401018 11 + TSS region transcription start site region 142409
D17Jcs98 17 5403550 to 5403768 218 DNA segment DNA segment, Chr 17, John C. Schimenti 98
Tssr142410 17 5404075 to 5404082 7 + TSS region transcription start site region 142410
Tssr146299 17 5406632 to 5406664 32 - TSS region transcription start site region 146299
Tmem242 17 5410870 to 5440259 29389 - protein coding gene transmembrane protein 242
Gm29050 17 5412064 to 5413483 1419 + antisense lncRNA gene predicted gene 29050
Ldhal6b 17 5417323 to 5418767 1444 - protein coding gene lactate dehydrogenase A-like 6B
Cpgi8558 17 5418294 to 5418803 509 CpG island CpG island 8558
Tssr146300 17 5418664 to 5418742 78 - TSS region transcription start site region 146300
Gm22475 17 5421464 to 5421565 101 + miRNA gene predicted gene, 22475
Tssr146301 17 5440229 to 5440263 34 - TSS region transcription start site region 146301
Gm8363 17 5481123 to 5482964 1841 - pseudogene predicted gene 8363
Cpgi8559 17 5491605 to 5493723 2118 CpG island CpG island 8559
Tssr146302 17 5492456 to 5492479 23 - TSS region transcription start site region 146302
Tssr146303 17 5492497 to 5492517 20 - TSS region transcription start site region 146303
Zdhhc14 17 5492557 to 5753811 261254 + protein coding gene zinc finger, DHHC domain containing 14
Tssr142411 17 5492558 to 5492646 88 + TSS region transcription start site region 142411
Tssr142412 17 5492914 to 5492954 40 + TSS region transcription start site region 142412
Tssr142413 17 5492982 to 5492989 7 + TSS region transcription start site region 142413
Tssr142414 17 5493155 to 5493196 41 + TSS region transcription start site region 142414
Tssr146304 17 5493975 to 5493997 22 - TSS region transcription start site region 146304
Tssr142415 17 5497457 to 5497465 8 + TSS region transcription start site region 142415
Tssr142416 17 5522035 to 5522058 23 + TSS region transcription start site region 142416
Tssr142417 17 5538504 to 5538510 6 + TSS region transcription start site region 142417
Tssr142418 17 5540109 to 5540124 15 + TSS region transcription start site region 142418
Tssr142419 17 5547888 to 5547901 13 + TSS region transcription start site region 142419
Tssr146305 17 5573189 to 5573193 4 - TSS region transcription start site region 146305
Tssr142420 17 5574914 to 5574941 27 + TSS region transcription start site region 142420
Tssr142421 17 5574951 to 5574964 13 + TSS region transcription start site region 142421
Tssr142422 17 5575004 to 5575032 28 + TSS region transcription start site region 142422
Tssr142423 17 5581012 to 5581016 4 + TSS region transcription start site region 142423
D17Tu1 17 5581076 to 5581317 241 DNA segment DNA segment, Chr 17, Tubingen 1
Tssr146306 17 5591643 to 5591675 32 - TSS region transcription start site region 146306
Tssr142424 17 5661700 to 5661712 12 + TSS region transcription start site region 142424
Tssr142425 17 5685677 to 5685689 12 + TSS region transcription start site region 142425
Tssr142426 17 5688088 to 5688132 44 + TSS region transcription start site region 142426
Tssr142427 17 5700082 to 5700121 39 + TSS region transcription start site region 142427
Tssr142428 17 5700166 to 5700204 38 + TSS region transcription start site region 142428
Tssr142429 17 5713139 to 5713143 4 + TSS region transcription start site region 142429
Tssr142430 17 5718011 to 5718028 17 + TSS region transcription start site region 142430
Tssr142431 17 5720856 to 5720879 23 + TSS region transcription start site region 142431
Tssr142432 17 5726535 to 5726538 3 + TSS region transcription start site region 142432
4930597E08Rik 17 5743397 to 5744207 810 unclassified gene RIKEN cDNA 4930597E08 gene
Gm41519 17 5760321 to 5770730 10409 - lncRNA gene predicted gene, 41519
3300005D01Rik 17 5798657 to 5803240 4583 + lincRNA gene RIKEN cDNA 3300005D01 gene
Tssr4985 17 5799487 to 5799499 12 + TSS region transcription start site region 4985
Tssr142433 17 5799597 to 5799614 17 + TSS region transcription start site region 142433
Tssr142434 17 5799616 to 5799649 33 + TSS region transcription start site region 142434
Tssr142435 17 5799660 to 5799678 18 + TSS region transcription start site region 142435
Tssr146307 17 5803335 to 5803362 27 - TSS region transcription start site region 146307
Tssr142436 17 5803910 to 5803923 13 + TSS region transcription start site region 142436
Tssr142437 17 5804621 to 5804633 12 + TSS region transcription start site region 142437
Tssr142438 17 5804655 to 5804661 6 + TSS region transcription start site region 142438
Gm10231 17 5816200 to 5816640 440 - pseudogene predicted pseudogene 10231
Tssr146308 17 5816699 to 5816701 2 - TSS region transcription start site region 146308
Gm26595 17 5817472 to 5817955 483 + pseudogene predicted gene, 26595
Gm26622 17 5837968 to 5838265 297 + pseudogene predicted gene, 26622
Cpgi8560 17 5840833 to 5841144 311 CpG island CpG island 8560
Tssr142439 17 5841252 to 5841271 19 + TSS region transcription start site region 142439
Tssr142440 17 5841307 to 5841377 70 + TSS region transcription start site region 142440
Snx9 17 5841380 to 5931956 90576 + protein coding gene sorting nexin 9