Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:32165122-32476773

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Notch3 17 32120820 to 32166880 46060 - protein coding gene notch 3
Cpgi8964 17 32165589 to 32166260 671 CpG island CpG island 8964
Cpgi8965 17 32166630 to 32167131 501 CpG island CpG island 8965
Tssr147344 17 32166748 to 32166772 24 - TSS region transcription start site region 147344
Tssr147345 17 32166879 to 32166898 19 - TSS region transcription start site region 147345
Ephx3 17 32183770 to 32189549 5779 - protein coding gene epoxide hydrolase 3
Cpgi8966 17 32188966 to 32189595 629 CpG island CpG island 8966
Tssr147346 17 32189439 to 32189450 11 - TSS region transcription start site region 147346
Tssr147347 17 32189457 to 32189476 19 - TSS region transcription start site region 147347
Brd4 17 32196274 to 32284722 88448 - protein coding gene bromodomain containing 4
Cpgi8967 17 32197438 to 32197628 190 CpG island CpG island 8967
Tssr143708 17 32201251 to 32201255 4 + TSS region transcription start site region 143708
Tssr147348 17 32205989 to 32205994 5 - TSS region transcription start site region 147348
Tssr147349 17 32211202 to 32211245 43 - TSS region transcription start site region 147349
Tssr147350 17 32211289 to 32211297 8 - TSS region transcription start site region 147350
Tssr147351 17 32213695 to 32213727 32 - TSS region transcription start site region 147351
Tssr147352 17 32214684 to 32214698 14 - TSS region transcription start site region 147352
Tssr147353 17 32214732 to 32214755 23 - TSS region transcription start site region 147353
Tssr147354 17 32221190 to 32221220 30 - TSS region transcription start site region 147354
Tssr147355 17 32224190 to 32224202 12 - TSS region transcription start site region 147355
Tssr147356 17 32229437 to 32229468 31 - TSS region transcription start site region 147356
Tssr147357 17 32229596 to 32229615 19 - TSS region transcription start site region 147357
Tssr147358 17 32229634 to 32229654 20 - TSS region transcription start site region 147358
Gm4432 17 32242231 to 32242508 277 + pseudogene predicted gene 4432
Tssr147359 17 32272430 to 32272433 3 - TSS region transcription start site region 147359
Tssr147360 17 32276727 to 32276744 17 - TSS region transcription start site region 147360
Cpgi8968 17 32283663 to 32285065 1402 CpG island CpG island 8968
Tssr147361 17 32284088 to 32284116 28 - TSS region transcription start site region 147361
Tssr147362 17 32284135 to 32284162 27 - TSS region transcription start site region 147362
Tssr143709 17 32284461 to 32284484 23 + TSS region transcription start site region 143709
Tssr147363 17 32284659 to 32284706 47 - TSS region transcription start site region 147363
Tssr147364 17 32284715 to 32284738 23 - TSS region transcription start site region 147364
Tssr143710 17 32284772 to 32284809 37 + TSS region transcription start site region 143710
Gm26549 17 32284789 to 32298689 13900 + bidirectional promoter lncRNA gene predicted gene, 26549
Akap8 17 32303676 to 32321153 17477 - protein coding gene A kinase (PRKA) anchor protein 8
Tssr147365 17 32315759 to 32315776 17 - TSS region transcription start site region 147365
Tssr147366 17 32319012 to 32319013 1 - TSS region transcription start site region 147366
Cpgi8969 17 32320122 to 32321773 1651 CpG island CpG island 8969
Tssr147367 17 32320655 to 32320682 27 - TSS region transcription start site region 147367
Tssr147368 17 32321102 to 32321116 14 - TSS region transcription start site region 147368
Tssr147369 17 32321118 to 32321204 86 - TSS region transcription start site region 147369
Tssr143711 17 32321376 to 32321422 46 + TSS region transcription start site region 143711
Akap8l 17 32321425 to 32350581 29156 - protein coding gene A kinase (PRKA) anchor protein 8-like
A630049H14Rik 17 32325903 to 32328458 2555 unclassified gene RIKEN cDNA A630049H14 gene
Tssr143712 17 32335554 to 32335594 40 + TSS region transcription start site region 143712
Cpgi8970 17 32350053 to 32351044 991 CpG island CpG island 8970
Tssr147370 17 32350535 to 32350568 33 - TSS region transcription start site region 147370
Tssr147371 17 32350569 to 32350600 31 - TSS region transcription start site region 147371
Wiz 17 32354055 to 32389401 35346 - protein coding gene widely-interspaced zinc finger motifs
Cpgi8971 17 32363675 to 32364924 1249 CpG island CpG island 8971
Tssr147372 17 32364415 to 32364426 11 - TSS region transcription start site region 147372
Tssr147373 17 32364430 to 32364488 58 - TSS region transcription start site region 147373
Gm26858 17 32369305 to 32378445 9140 + lincRNA gene predicted gene, 26858
Tssr147374 17 32369412 to 32369432 20 - TSS region transcription start site region 147374
Cpgi8972 17 32388701 to 32389621 920 CpG island CpG island 8972
Tssr147375 17 32388998 to 32389047 49 - TSS region transcription start site region 147375
Gm22201 17 32389011 to 32389069 58 + miRNA gene predicted gene, 22201
Tssr147376 17 32389364 to 32389411 47 - TSS region transcription start site region 147376
Rasal3 17 32390659 to 32403583 12924 - protein coding gene RAS protein activator like 3
Tssr147377 17 32391864 to 32391866 2 - TSS region transcription start site region 147377
Cpgi8973 17 32392194 to 32392737 543 CpG island CpG island 8973
Cpgi8974 17 32396162 to 32397030 868 CpG island CpG island 8974
A530088E08Rik 17 32403014 to 32404808 1794 + lncRNA gene RIKEN cDNA A530088E08 gene
Tssr147378 17 32403484 to 32403495 11 - TSS region transcription start site region 147378
Tssr147379 17 32403526 to 32403535 9 - TSS region transcription start site region 147379
Tssr147380 17 32403551 to 32403590 39 - TSS region transcription start site region 147380
Tssr147381 17 32403594 to 32403605 11 - TSS region transcription start site region 147381
Tssr147382 17 32409515 to 32409520 5 - TSS region transcription start site region 147382
Gm41569 17 32410861 to 32412926 2065 + lncRNA gene predicted gene, 41569
Pglyrp2 17 32413100 to 32424167 11067 - protein coding gene peptidoglycan recognition protein 2
Cpgi8975 17 32415729 to 32416202 473 CpG island CpG island 8975
Cpgi8976 17 32416859 to 32417124 265 CpG island CpG island 8976
Tssr147383 17 32418855 to 32418856 1 - TSS region transcription start site region 147383
Tssr147384 17 32420917 to 32420948 31 - TSS region transcription start site region 147384
Tssr147385 17 32420965 to 32420986 21 - TSS region transcription start site region 147385
Tssr147386 17 32420998 to 32421003 5 - TSS region transcription start site region 147386
Tssr147387 17 32424102 to 32424127 25 - TSS region transcription start site region 147387
Tssr147388 17 32424139 to 32424153 14 - TSS region transcription start site region 147388
Tssr147389 17 32424157 to 32424162 5 - TSS region transcription start site region 147389
Tssr147390 17 32424179 to 32424190 11 - TSS region transcription start site region 147390
Tssr147391 17 32425280 to 32425295 15 - TSS region transcription start site region 147391
Cpgi8977 17 32452643 to 32452940 297 CpG island CpG island 8977
Tssr143713 17 32452719 to 32452731 12 + TSS region transcription start site region 143713
Tssr143714 17 32452745 to 32452757 12 + TSS region transcription start site region 143714
Cyp4f39 17 32468462 to 32492479 24017 + protein coding gene cytochrome P450, family 4, subfamily f, polypeptide 39