Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:31868663-32700065

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dp(17Abcg1-Rrp1b)3Yey 17 31057698 to 32062865 1005167 chromosomal duplication duplication, Chr 17, Y Eugene Yu 3
Del(17Abcg1-Rrp1b)5Yey 17 31057698 to 32062865 1005167 chromosomal deletion deletion, Chr 17, Y Eugene Yu 5
Gm30509 17 31867118 to 31871103 3985 - lncRNA gene predicted gene, 30509
Tssr147336 17 31870790 to 31870793 3 - TSS region transcription start site region 147336
Tssr147337 17 31871028 to 31871037 9 - TSS region transcription start site region 147337
Gm50000 17 31896419 to 31899178 2759 - lincRNA gene predicted gene, 50000
Gm41566 17 31897934 to 31899392 1458 + lncRNA gene predicted gene, 41566
Tssr147338 17 31905850 to 31905870 20 - TSS region transcription start site region 147338
2310015A16Rik 17 31907877 to 31912448 4571 - lncRNA gene RIKEN cDNA 2310015A16 gene
Gm30571 17 31912567 to 31913803 1236 + lncRNA gene predicted gene, 30571
Tssr143697 17 31912657 to 31912673 16 + TSS region transcription start site region 143697
Tssr143698 17 31912728 to 31912737 9 + TSS region transcription start site region 143698
Tssr143699 17 31930562 to 31930565 3 + TSS region transcription start site region 143699
Hsf2bp 17 31944769 to 32034508 89739 - protein coding gene heat shock transcription factor 2 binding protein
Gm17572 17 31950549 to 31950968 419 + pseudogene predicted gene, 17572
Tssr143700 17 32007100 to 32007133 33 + TSS region transcription start site region 143700
Tssr147339 17 32021940 to 32021948 8 - TSS region transcription start site region 147339
Gm25883 17 32027938 to 32028208 270 + unclassified non-coding RNA gene predicted gene, 25883
Cpgi8957 17 32034391 to 32034664 273 CpG island CpG island 8957
Tssr147340 17 32034493 to 32034523 30 - TSS region transcription start site region 147340
Tssr147341 17 32034530 to 32034539 9 - TSS region transcription start site region 147341
Cpgi8958 17 32035736 to 32036985 1249 CpG island CpG island 8958
Tssr143701 17 32036098 to 32036113 15 + TSS region transcription start site region 143701
Rrp1b 17 32036162 to 32062865 26703 + protein coding gene ribosomal RNA processing 1 homolog B (S. cerevisiae)
Tssr147342 17 32036314 to 32036330 16 - TSS region transcription start site region 147342
Tssr143702 17 32036399 to 32036453 54 + TSS region transcription start site region 143702
Pdxk-ps 17 32076083 to 32091423 15340 - pseudogene pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene
Cpgi8959 17 32099841 to 32100798 957 CpG island CpG island 8959
Tssr143703 17 32109111 to 32109114 3 + TSS region transcription start site region 143703
Gm30729 17 32110131 to 32113017 2886 - lncRNA gene predicted gene, 30729
Tssr143704 17 32111216 to 32111232 16 + TSS region transcription start site region 143704
Gm17276 17 32113429 to 32141839 28410 + lincRNA gene predicted gene, 17276
Cpgi8960 17 32113513 to 32114330 817 CpG island CpG island 8960
Tssr143705 17 32113746 to 32113756 10 + TSS region transcription start site region 143705
Tssr143706 17 32113804 to 32113844 40 + TSS region transcription start site region 143706
Gm38585 17 32113837 to 32131492 17655 + lncRNA gene predicted gene, 38585
Tssr143707 17 32113846 to 32113868 22 + TSS region transcription start site region 143707
Notch3 17 32120820 to 32166880 46060 - protein coding gene notch 3
Gm41568 17 32139806 to 32141844 2038 + lncRNA gene predicted gene, 41568
Cpgi8961 17 32141126 to 32141539 413 CpG island CpG island 8961
Cpgi8962 17 32143381 to 32143764 383 CpG island CpG island 8962
Cpgi8963 17 32161928 to 32162917 989 CpG island CpG island 8963
Tssr147343 17 32165003 to 32165015 12 - TSS region transcription start site region 147343
Cpgi8964 17 32165589 to 32166260 671 CpG island CpG island 8964
Cpgi8965 17 32166630 to 32167131 501 CpG island CpG island 8965
Tssr147344 17 32166748 to 32166772 24 - TSS region transcription start site region 147344
Tssr147345 17 32166879 to 32166898 19 - TSS region transcription start site region 147345
Ephx3 17 32183770 to 32189549 5779 - protein coding gene epoxide hydrolase 3
Cpgi8966 17 32188966 to 32189595 629 CpG island CpG island 8966
Tssr147346 17 32189439 to 32189450 11 - TSS region transcription start site region 147346
Tssr147347 17 32189457 to 32189476 19 - TSS region transcription start site region 147347
Brd4 17 32196274 to 32284722 88448 - protein coding gene bromodomain containing 4
Cpgi8967 17 32197438 to 32197628 190 CpG island CpG island 8967
Tssr143708 17 32201251 to 32201255 4 + TSS region transcription start site region 143708
Tssr147348 17 32205989 to 32205994 5 - TSS region transcription start site region 147348
Tssr147349 17 32211202 to 32211245 43 - TSS region transcription start site region 147349
Tssr147350 17 32211289 to 32211297 8 - TSS region transcription start site region 147350
Tssr147351 17 32213695 to 32213727 32 - TSS region transcription start site region 147351
Tssr147352 17 32214684 to 32214698 14 - TSS region transcription start site region 147352
Tssr147353 17 32214732 to 32214755 23 - TSS region transcription start site region 147353
Tssr147354 17 32221190 to 32221220 30 - TSS region transcription start site region 147354
Tssr147355 17 32224190 to 32224202 12 - TSS region transcription start site region 147355
Tssr147356 17 32229437 to 32229468 31 - TSS region transcription start site region 147356
Tssr147357 17 32229596 to 32229615 19 - TSS region transcription start site region 147357
Tssr147358 17 32229634 to 32229654 20 - TSS region transcription start site region 147358
Gm4432 17 32242231 to 32242508 277 + pseudogene predicted gene 4432
Tssr147359 17 32272430 to 32272433 3 - TSS region transcription start site region 147359
Tssr147360 17 32276727 to 32276744 17 - TSS region transcription start site region 147360
Cpgi8968 17 32283663 to 32285065 1402 CpG island CpG island 8968
Tssr147361 17 32284088 to 32284116 28 - TSS region transcription start site region 147361
Tssr147362 17 32284135 to 32284162 27 - TSS region transcription start site region 147362
Tssr143709 17 32284461 to 32284484 23 + TSS region transcription start site region 143709
Tssr147363 17 32284659 to 32284706 47 - TSS region transcription start site region 147363
Tssr147364 17 32284715 to 32284738 23 - TSS region transcription start site region 147364
Tssr143710 17 32284772 to 32284809 37 + TSS region transcription start site region 143710
Gm26549 17 32284789 to 32298689 13900 + bidirectional promoter lncRNA gene predicted gene, 26549
Akap8 17 32303676 to 32321153 17477 - protein coding gene A kinase (PRKA) anchor protein 8
Tssr147365 17 32315759 to 32315776 17 - TSS region transcription start site region 147365
Tssr147366 17 32319012 to 32319013 1 - TSS region transcription start site region 147366
Cpgi8969 17 32320122 to 32321773 1651 CpG island CpG island 8969
Tssr147367 17 32320655 to 32320682 27 - TSS region transcription start site region 147367
Tssr147368 17 32321102 to 32321116 14 - TSS region transcription start site region 147368
Tssr147369 17 32321118 to 32321204 86 - TSS region transcription start site region 147369
Tssr143711 17 32321376 to 32321422 46 + TSS region transcription start site region 143711
Akap8l 17 32321425 to 32350581 29156 - protein coding gene A kinase (PRKA) anchor protein 8-like
A630049H14Rik 17 32325903 to 32328458 2555 unclassified gene RIKEN cDNA A630049H14 gene
Tssr143712 17 32335554 to 32335594 40 + TSS region transcription start site region 143712
Cpgi8970 17 32350053 to 32351044 991 CpG island CpG island 8970
Tssr147370 17 32350535 to 32350568 33 - TSS region transcription start site region 147370
Tssr147371 17 32350569 to 32350600 31 - TSS region transcription start site region 147371
Wiz 17 32354055 to 32389401 35346 - protein coding gene widely-interspaced zinc finger motifs
Cpgi8971 17 32363675 to 32364924 1249 CpG island CpG island 8971
Tssr147372 17 32364415 to 32364426 11 - TSS region transcription start site region 147372
Tssr147373 17 32364430 to 32364488 58 - TSS region transcription start site region 147373
Gm26858 17 32369305 to 32378445 9140 + lincRNA gene predicted gene, 26858
Tssr147374 17 32369412 to 32369432 20 - TSS region transcription start site region 147374
Cpgi8972 17 32388701 to 32389621 920 CpG island CpG island 8972
Tssr147375 17 32388998 to 32389047 49 - TSS region transcription start site region 147375
Gm22201 17 32389011 to 32389069 58 + miRNA gene predicted gene, 22201
Tssr147376 17 32389364 to 32389411 47 - TSS region transcription start site region 147376
Rasal3 17 32390659 to 32403583 12924 - protein coding gene RAS protein activator like 3
Tssr147377 17 32391864 to 32391866 2 - TSS region transcription start site region 147377
Cpgi8973 17 32392194 to 32392737 543 CpG island CpG island 8973
Cpgi8974 17 32396162 to 32397030 868 CpG island CpG island 8974
A530088E08Rik 17 32403014 to 32404808 1794 + lncRNA gene RIKEN cDNA A530088E08 gene
Tssr147378 17 32403484 to 32403495 11 - TSS region transcription start site region 147378
Tssr147379 17 32403526 to 32403535 9 - TSS region transcription start site region 147379
Tssr147380 17 32403551 to 32403590 39 - TSS region transcription start site region 147380
Tssr147381 17 32403594 to 32403605 11 - TSS region transcription start site region 147381
Tssr147382 17 32409515 to 32409520 5 - TSS region transcription start site region 147382
Gm41569 17 32410861 to 32412926 2065 + lncRNA gene predicted gene, 41569
Pglyrp2 17 32413100 to 32424167 11067 - protein coding gene peptidoglycan recognition protein 2
Cpgi8975 17 32415729 to 32416202 473 CpG island CpG island 8975
Cpgi8976 17 32416859 to 32417124 265 CpG island CpG island 8976
Tssr147383 17 32418855 to 32418856 1 - TSS region transcription start site region 147383
Tssr147384 17 32420917 to 32420948 31 - TSS region transcription start site region 147384
Tssr147385 17 32420965 to 32420986 21 - TSS region transcription start site region 147385
Tssr147386 17 32420998 to 32421003 5 - TSS region transcription start site region 147386
Tssr147387 17 32424102 to 32424127 25 - TSS region transcription start site region 147387
Tssr147388 17 32424139 to 32424153 14 - TSS region transcription start site region 147388
Tssr147389 17 32424157 to 32424162 5 - TSS region transcription start site region 147389
Tssr147390 17 32424179 to 32424190 11 - TSS region transcription start site region 147390
Tssr147391 17 32425280 to 32425295 15 - TSS region transcription start site region 147391
Cpgi8977 17 32452643 to 32452940 297 CpG island CpG island 8977
Tssr143713 17 32452719 to 32452731 12 + TSS region transcription start site region 143713
Tssr143714 17 32452745 to 32452757 12 + TSS region transcription start site region 143714
Cyp4f39 17 32468462 to 32492479 24017 + protein coding gene cytochrome P450, family 4, subfamily f, polypeptide 39
Cpgi8978 17 32483115 to 32483501 386 CpG island CpG island 8978
Tssr143715 17 32492153 to 32492161 8 + TSS region transcription start site region 143715
Tssr143716 17 32492168 to 32492199 31 + TSS region transcription start site region 143716
Cpgi8979 17 32492215 to 32492741 526 CpG island CpG island 8979
D17Mit63 17 32505099 to 32505226 127 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 63
Tssr143717 17 32506419 to 32506440 21 + TSS region transcription start site region 143717
Tssr143718 17 32506446 to 32506473 27 + TSS region transcription start site region 143718
Cyp4f17 17 32506462 to 32528894 22432 + protein coding gene cytochrome P450, family 4, subfamily f, polypeptide 17
Tssr143719 17 32506474 to 32506501 27 + TSS region transcription start site region 143719
Tssr143720 17 32521731 to 32521735 4 + TSS region transcription start site region 143720
Tssr147392 17 32524045 to 32524057 12 - TSS region transcription start site region 147392
Tssr147393 17 32524061 to 32524086 25 - TSS region transcription start site region 147393
Cpgi8980 17 32528599 to 32528920 321 CpG island CpG island 8980
Tssr143721 17 32536555 to 32536573 18 + TSS region transcription start site region 143721
Cyp4f16 17 32536558 to 32551798 15240 + protein coding gene cytochrome P450, family 4, subfamily f, polypeptide 16
Tssr143722 17 32536576 to 32536615 39 + TSS region transcription start site region 143722
Tssr143723 17 32536616 to 32536630 14 + TSS region transcription start site region 143723
Tssr143724 17 32538350 to 32538371 21 + TSS region transcription start site region 143724
Cpgi8981 17 32551005 to 32551249 244 CpG island CpG island 8981
Gm41570 17 32563614 to 32564268 654 + lncRNA gene predicted gene, 41570
D17Mit230 17 32564900 to 32565022 122 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 230
Gm50036 17 32578546 to 32578732 186 + pseudogene predicted gene, 50036
Gm8497 17 32586504 to 32594207 7703 + pseudogene predicted gene 8497
D17Aus127 17 32599813 to 32599939 126 DNA segment DNA segment, Chr 17, Austin 127
Gm50038 17 32602474 to 32604733 2259 + pseudogene predicted gene, 50038
Cyp4f37 17 32621319 to 32636184 14865 + protein coding gene cytochrome P450, family 4, subfamily f, polypeptide 37
1700082C02Rik 17 32634701 to 32635133 432 unclassified gene RIKEN cDNA 1700082C02 gene
Cpgi8982 17 32634945 to 32635194 249 CpG island CpG island 8982
Tssr147394 17 32635139 to 32635157 18 - TSS region transcription start site region 147394
Cyp4f38-ps 17 32642725 to 32653196 10471 + pseudogene cytochrome P450, family 4, subfamily f, member 38, pseudogene
Tssr143725 17 32658878 to 32658913 35 + TSS region transcription start site region 143725
Cyp4f40 17 32658900 to 32676914 18014 + protein coding gene cytochrome P450, family 4, subfamily f, polypeptide 40
Tssr143726 17 32658966 to 32658977 11 + TSS region transcription start site region 143726
Tssr143727 17 32658989 to 32659002 13 + TSS region transcription start site region 143727
Tssr143728 17 32659009 to 32659020 11 + TSS region transcription start site region 143728
Tssr143729 17 32659021 to 32659041 20 + TSS region transcription start site region 143729
Tssr143730 17 32659044 to 32659058 14 + TSS region transcription start site region 143730
Tssr143731 17 32659066 to 32659079 13 + TSS region transcription start site region 143731
Tssr143732 17 32659080 to 32659091 11 + TSS region transcription start site region 143732
Cpgi8983 17 32676202 to 32676565 363 CpG island CpG island 8983
Tssr143733 17 32685585 to 32685596 11 + TSS region transcription start site region 143733
Tssr143734 17 32685610 to 32685615 5 + TSS region transcription start site region 143734
Cyp4f15 17 32685627 to 32703352 17725 + protein coding gene cytochrome P450, family 4, subfamily f, polypeptide 15
Tssr143735 17 32685639 to 32685643 4 + TSS region transcription start site region 143735
Tssr143736 17 32685655 to 32685677 22 + TSS region transcription start site region 143736
Tssr143737 17 32686093 to 32686106 13 + TSS region transcription start site region 143737