Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:31847938-32208208

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dp(17Abcg1-Rrp1b)3Yey 17 31057698 to 32062865 1005167 chromosomal duplication duplication, Chr 17, Y Eugene Yu 3
Del(17Abcg1-Rrp1b)5Yey 17 31057698 to 32062865 1005167 chromosomal deletion deletion, Chr 17, Y Eugene Yu 5
Sik1 17 31844250 to 31855792 11542 - protein coding gene salt inducible kinase 1
Tssr147325 17 31848832 to 31848847 15 - TSS region transcription start site region 147325
Tssr147326 17 31849571 to 31849597 26 - TSS region transcription start site region 147326
Tssr147327 17 31850004 to 31850017 13 - TSS region transcription start site region 147327
Tssr147328 17 31850054 to 31850074 20 - TSS region transcription start site region 147328
Cpgi8956 17 31854764 to 31856662 1898 CpG island CpG island 8956
Tssr143696 17 31854894 to 31854911 17 + TSS region transcription start site region 143696
Tssr147329 17 31855760 to 31855774 14 - TSS region transcription start site region 147329
Tssr147330 17 31855782 to 31855802 20 - TSS region transcription start site region 147330
Tssr147331 17 31855814 to 31855827 13 - TSS region transcription start site region 147331
Tssr147332 17 31855829 to 31855838 9 - TSS region transcription start site region 147332
Tssr147333 17 31856591 to 31856613 22 - TSS region transcription start site region 147333
Tssr147334 17 31858053 to 31858069 16 - TSS region transcription start site region 147334
Tssr147335 17 31858080 to 31858089 9 - TSS region transcription start site region 147335
Gm41565 17 31864309 to 31865758 1449 - lncRNA gene predicted gene, 41565
Gm30509 17 31867118 to 31871103 3985 - lncRNA gene predicted gene, 30509
Tssr147336 17 31870790 to 31870793 3 - TSS region transcription start site region 147336
Tssr147337 17 31871028 to 31871037 9 - TSS region transcription start site region 147337
Gm50000 17 31896419 to 31899178 2759 - lincRNA gene predicted gene, 50000
Gm41566 17 31897934 to 31899392 1458 + lncRNA gene predicted gene, 41566
Tssr147338 17 31905850 to 31905870 20 - TSS region transcription start site region 147338
2310015A16Rik 17 31907877 to 31912448 4571 - lncRNA gene RIKEN cDNA 2310015A16 gene
Gm30571 17 31912567 to 31913803 1236 + lncRNA gene predicted gene, 30571
Tssr143697 17 31912657 to 31912673 16 + TSS region transcription start site region 143697
Tssr143698 17 31912728 to 31912737 9 + TSS region transcription start site region 143698
Tssr143699 17 31930562 to 31930565 3 + TSS region transcription start site region 143699
Hsf2bp 17 31944769 to 32034508 89739 - protein coding gene heat shock transcription factor 2 binding protein
Gm17572 17 31950549 to 31950968 419 + pseudogene predicted gene, 17572
Tssr143700 17 32007100 to 32007133 33 + TSS region transcription start site region 143700
Tssr147339 17 32021940 to 32021948 8 - TSS region transcription start site region 147339
Gm25883 17 32027938 to 32028208 270 + unclassified non-coding RNA gene predicted gene, 25883
Cpgi8957 17 32034391 to 32034664 273 CpG island CpG island 8957
Tssr147340 17 32034493 to 32034523 30 - TSS region transcription start site region 147340
Tssr147341 17 32034530 to 32034539 9 - TSS region transcription start site region 147341
Cpgi8958 17 32035736 to 32036985 1249 CpG island CpG island 8958
Tssr143701 17 32036098 to 32036113 15 + TSS region transcription start site region 143701
Rrp1b 17 32036162 to 32062865 26703 + protein coding gene ribosomal RNA processing 1 homolog B (S. cerevisiae)
Tssr147342 17 32036314 to 32036330 16 - TSS region transcription start site region 147342
Tssr143702 17 32036399 to 32036453 54 + TSS region transcription start site region 143702
Pdxk-ps 17 32076083 to 32091423 15340 - pseudogene pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene
Cpgi8959 17 32099841 to 32100798 957 CpG island CpG island 8959
Tssr143703 17 32109111 to 32109114 3 + TSS region transcription start site region 143703
Gm30729 17 32110131 to 32113017 2886 - lncRNA gene predicted gene, 30729
Tssr143704 17 32111216 to 32111232 16 + TSS region transcription start site region 143704
Gm17276 17 32113429 to 32141839 28410 + lincRNA gene predicted gene, 17276
Cpgi8960 17 32113513 to 32114330 817 CpG island CpG island 8960
Tssr143705 17 32113746 to 32113756 10 + TSS region transcription start site region 143705
Tssr143706 17 32113804 to 32113844 40 + TSS region transcription start site region 143706
Gm38585 17 32113837 to 32131492 17655 + lncRNA gene predicted gene, 38585
Tssr143707 17 32113846 to 32113868 22 + TSS region transcription start site region 143707
Notch3 17 32120820 to 32166880 46060 - protein coding gene notch 3
Gm41568 17 32139806 to 32141844 2038 + lncRNA gene predicted gene, 41568
Cpgi8961 17 32141126 to 32141539 413 CpG island CpG island 8961
Cpgi8962 17 32143381 to 32143764 383 CpG island CpG island 8962
Cpgi8963 17 32161928 to 32162917 989 CpG island CpG island 8963
Tssr147343 17 32165003 to 32165015 12 - TSS region transcription start site region 147343
Cpgi8964 17 32165589 to 32166260 671 CpG island CpG island 8964
Cpgi8965 17 32166630 to 32167131 501 CpG island CpG island 8965
Tssr147344 17 32166748 to 32166772 24 - TSS region transcription start site region 147344
Tssr147345 17 32166879 to 32166898 19 - TSS region transcription start site region 147345
Ephx3 17 32183770 to 32189549 5779 - protein coding gene epoxide hydrolase 3
Cpgi8966 17 32188966 to 32189595 629 CpG island CpG island 8966
Tssr147346 17 32189439 to 32189450 11 - TSS region transcription start site region 147346
Tssr147347 17 32189457 to 32189476 19 - TSS region transcription start site region 147347
Brd4 17 32196274 to 32284722 88448 - protein coding gene bromodomain containing 4
Cpgi8967 17 32197438 to 32197628 190 CpG island CpG island 8967
Tssr143708 17 32201251 to 32201255 4 + TSS region transcription start site region 143708
Tssr147348 17 32205989 to 32205994 5 - TSS region transcription start site region 147348