Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:3178215-3728226

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scaf8 17 3114972 to 3198859 83887 + protein coding gene SR-related CTD-associated factor 8
Tssr142355 17 3188637 to 3188651 14 + TSS region transcription start site region 142355
Gm49797 17 3198110 to 3311120 113010 + lincRNA gene predicted gene, 49797
Tssr142356 17 3199601 to 3199605 4 + TSS region transcription start site region 142356
Tssr142357 17 3210506 to 3210510 4 + TSS region transcription start site region 142357
D17Brg6 17 3225374 to 3225610 236 DNA segment DNA segment, Chr 17, David E. Bergstrom 6
Tssr142358 17 3239846 to 3239850 4 + TSS region transcription start site region 142358
Gm34035 17 3270681 to 3283270 12589 - lincRNA gene predicted gene, 34035
Tssr146282 17 3283165 to 3283178 13 - TSS region transcription start site region 146282
Tssr146283 17 3283186 to 3283197 11 - TSS region transcription start site region 146283
Tssr146284 17 3283244 to 3283267 23 - TSS region transcription start site region 146284
Tssr146285 17 3283276 to 3283284 8 - TSS region transcription start site region 146285
Gm6475 17 3312250 to 3314185 1935 - pseudogene predicted gene 6475
Cpgi8545 17 3313922 to 3314826 904 CpG island CpG island 8545
Tssr146286 17 3314177 to 3314221 44 - TSS region transcription start site region 146286
Cpgi8546 17 3325199 to 3325520 321 CpG island CpG island 8546
D17Brg11 17 3325211 to 3325491 280 DNA segment DNA segment, Chr 17, David E. Bergstrom 11
Cpgi8547 17 3326057 to 3327344 1287 CpG island CpG island 8547
Tiam2 17 3326296 to 3519397 193101 + protein coding gene T cell lymphoma invasion and metastasis 2
Tssr142359 17 3326552 to 3326585 33 + TSS region transcription start site region 142359
Tssr142360 17 3326586 to 3326595 9 + TSS region transcription start site region 142360
Tssr142361 17 3326677 to 3326684 7 + TSS region transcription start site region 142361
Gm49221 17 3346711 to 3347067 356 - pseudogene predicted gene, 49221
D17Mit267 17 3354862 to 3355007 145 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-267
Tssr142362 17 3397189 to 3397204 15 + TSS region transcription start site region 142362
Tssr142363 17 3397220 to 3397242 22 + TSS region transcription start site region 142363
Tssr4981 17 3410941 to 3410944 3 + TSS region transcription start site region 4981
Cpgi8548 17 3414562 to 3414746 184 CpG island CpG island 8548
D17Brg18 17 3431185 to 3431485 300 DNA segment DNA segment, Chr 17, David E. Bergstrom 18
Tssr142364 17 3453215 to 3453226 11 + TSS region transcription start site region 142364
Tssr142365 17 3453229 to 3453244 15 + TSS region transcription start site region 142365
Tssr142366 17 3453255 to 3453276 21 + TSS region transcription start site region 142366
Tssr142367 17 3454238 to 3454253 15 + TSS region transcription start site region 142367
Gm7043 17 3461804 to 3462332 528 - pseudogene predicted gene 7043
Tssr146287 17 3462365 to 3462373 8 - TSS region transcription start site region 146287
Tssr142368 17 3463010 to 3463040 30 + TSS region transcription start site region 142368
D17Brg19 17 3478791 to 3479159 368 DNA segment DNA segment, Chr 17, David E. Bergstrom 19
Tssr142369 17 3482180 to 3482187 7 + TSS region transcription start site region 142369
Tssr142370 17 3482244 to 3482255 11 + TSS region transcription start site region 142370
Tssr142371 17 3482467 to 3482489 22 + TSS region transcription start site region 142371
Tfb1m 17 3519256 to 3557777 38521 - protein coding gene transcription factor B1, mitochondrial
Cldn20 17 3532554 to 3533213 659 + protein coding gene claudin 20
Cpgi8549 17 3557207 to 3557967 760 CpG island CpG island 8549
Tssr142372 17 3557452 to 3557462 10 + TSS region transcription start site region 142372
Tssr142373 17 3557521 to 3557578 57 + TSS region transcription start site region 142373
Tssr146288 17 3557718 to 3557733 15 - TSS region transcription start site region 146288
Tssr146289 17 3557742 to 3557775 33 - TSS region transcription start site region 146289
Tssr146290 17 3557785 to 3557797 12 - TSS region transcription start site region 146290
Tssr146291 17 3557813 to 3557824 11 - TSS region transcription start site region 146291
1700102H20Rik 17 3557824 to 3559862 2038 + lincRNA gene RIKEN cDNA 1700102H20 gene
Tssr4982 17 3557834 to 3557838 4 - TSS region transcription start site region 4982
Tssr142374 17 3557847 to 3557877 30 + TSS region transcription start site region 142374
Tssr142375 17 3558097 to 3558112 15 + TSS region transcription start site region 142375
Gm34155 17 3562349 to 3577325 14976 + lncRNA gene predicted gene, 34155
D17Mit268 17 3618921 to 3619065 144 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-268
Nox3 17 3635240 to 3696261 61021 - protein coding gene NADPH oxidase 3
D17Brg22 17 3644234 to 3644449 215 DNA segment DNA segment, Chr 17, David E. Bergstrom 22
D17Brg23 17 3657357 to 3657575 218 DNA segment DNA segment, Chr 17, David E. Bergstrom 23
Tssr146292 17 3663562 to 3663567 5 - TSS region transcription start site region 146292
Gm34208 17 3663658 to 3671660 8002 + lncRNA gene predicted gene, 34208
D17Brg119 17 3719719 to 3719902 183 DNA segment DNA segment, Chr 17, David E. Bergstrom 119