Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:31775549-32125968

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
hlb156 17 24857609 to 31842786 6985177 heritable phenotypic marker heart, lung and blood, 156
Del(17Abcg1-Rrp1b)5Yey 17 31057698 to 32062865 1005167 chromosomal deletion deletion, Chr 17, Y Eugene Yu 5
Dp(17Abcg1-Rrp1b)3Yey 17 31057698 to 32062865 1005167 chromosomal duplication duplication, Chr 17, Y Eugene Yu 3
Gm49999 17 31789504 to 31793310 3806 + lincRNA gene predicted gene, 49999
Tssr147318 17 31790635 to 31790656 21 - TSS region transcription start site region 147318
Cpgi8954 17 31791606 to 31792032 426 CpG island CpG island 8954
Tssr147319 17 31808044 to 31808065 21 - TSS region transcription start site region 147319
Tssr143694 17 31808462 to 31808467 5 + TSS region transcription start site region 143694
Cpgi8955 17 31809963 to 31810284 321 CpG island CpG island 8955
Tssr147320 17 31811454 to 31811465 11 - TSS region transcription start site region 147320
Tssr147321 17 31819305 to 31819312 7 - TSS region transcription start site region 147321
Tssr143695 17 31820348 to 31820357 9 + TSS region transcription start site region 143695
Gm41563 17 31825354 to 31828784 3430 + lncRNA gene predicted gene, 41563
Gm41564 17 31834787 to 31837596 2809 + lncRNA gene predicted gene, 41564
Tssr147322 17 31841162 to 31841165 3 - TSS region transcription start site region 147322
Lgth9 17 31842678 to 31842786 108 QTL body length 9
Fembrs4 17 31842678 to 31842786 108 QTL femur breaking strength 4
Tbbmd7 17 31842678 to 31842786 108 QTL total body bone mineral density 7
Pcir4 17 31842678 to 31842786 108 QTL periosteal circumference 4
D17Mit175 17 31842678 to 31842786 108 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 175
Blmpf1 17 31842678 to 37333884 5491206 QTL bleomycin-induced pulmonary fibrosis 1
repro17 17 31842678 to 47722705 15880027 heritable phenotypic marker reproductive mutant 17, JAX Reproductive Mutagenesis Program
Sik1 17 31844250 to 31855792 11542 - protein coding gene salt inducible kinase 1
Tssr147323 17 31844373 to 31844378 5 - TSS region transcription start site region 147323
Tssr147324 17 31844510 to 31844515 5 - TSS region transcription start site region 147324
Tssr147325 17 31848832 to 31848847 15 - TSS region transcription start site region 147325
Tssr147326 17 31849571 to 31849597 26 - TSS region transcription start site region 147326
Tssr147327 17 31850004 to 31850017 13 - TSS region transcription start site region 147327
Tssr147328 17 31850054 to 31850074 20 - TSS region transcription start site region 147328
Cpgi8956 17 31854764 to 31856662 1898 CpG island CpG island 8956
Tssr143696 17 31854894 to 31854911 17 + TSS region transcription start site region 143696
Tssr147329 17 31855760 to 31855774 14 - TSS region transcription start site region 147329
Tssr147330 17 31855782 to 31855802 20 - TSS region transcription start site region 147330
Tssr147331 17 31855814 to 31855827 13 - TSS region transcription start site region 147331
Tssr147332 17 31855829 to 31855838 9 - TSS region transcription start site region 147332
Tssr147333 17 31856591 to 31856613 22 - TSS region transcription start site region 147333
Tssr147334 17 31858053 to 31858069 16 - TSS region transcription start site region 147334
Tssr147335 17 31858080 to 31858089 9 - TSS region transcription start site region 147335
Gm41565 17 31864309 to 31865758 1449 - lncRNA gene predicted gene, 41565
Gm30509 17 31867118 to 31871103 3985 - lncRNA gene predicted gene, 30509
Tssr147336 17 31870790 to 31870793 3 - TSS region transcription start site region 147336
Tssr147337 17 31871028 to 31871037 9 - TSS region transcription start site region 147337
Gm50000 17 31896419 to 31899178 2759 - lincRNA gene predicted gene, 50000
Gm41566 17 31897934 to 31899392 1458 + lncRNA gene predicted gene, 41566
Tssr147338 17 31905850 to 31905870 20 - TSS region transcription start site region 147338
2310015A16Rik 17 31907877 to 31912448 4571 - lncRNA gene RIKEN cDNA 2310015A16 gene
Gm30571 17 31912567 to 31913803 1236 + lncRNA gene predicted gene, 30571
Tssr143697 17 31912657 to 31912673 16 + TSS region transcription start site region 143697
Tssr143698 17 31912728 to 31912737 9 + TSS region transcription start site region 143698
Tssr143699 17 31930562 to 31930565 3 + TSS region transcription start site region 143699
Hsf2bp 17 31944769 to 32034508 89739 - protein coding gene heat shock transcription factor 2 binding protein
Gm17572 17 31950549 to 31950968 419 + pseudogene predicted gene, 17572
Tssr143700 17 32007100 to 32007133 33 + TSS region transcription start site region 143700
Tssr147339 17 32021940 to 32021948 8 - TSS region transcription start site region 147339
Gm25883 17 32027938 to 32028208 270 + unclassified non-coding RNA gene predicted gene, 25883
Cpgi8957 17 32034391 to 32034664 273 CpG island CpG island 8957
Tssr147340 17 32034493 to 32034523 30 - TSS region transcription start site region 147340
Tssr147341 17 32034530 to 32034539 9 - TSS region transcription start site region 147341
Cpgi8958 17 32035736 to 32036985 1249 CpG island CpG island 8958
Tssr143701 17 32036098 to 32036113 15 + TSS region transcription start site region 143701
Rrp1b 17 32036162 to 32062865 26703 + protein coding gene ribosomal RNA processing 1 homolog B (S. cerevisiae)
Tssr147342 17 32036314 to 32036330 16 - TSS region transcription start site region 147342
Tssr143702 17 32036399 to 32036453 54 + TSS region transcription start site region 143702
Pdxk-ps 17 32076083 to 32091423 15340 - pseudogene pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene
Cpgi8959 17 32099841 to 32100798 957 CpG island CpG island 8959
Tssr143703 17 32109111 to 32109114 3 + TSS region transcription start site region 143703
Gm30729 17 32110131 to 32113017 2886 - lncRNA gene predicted gene, 30729
Tssr143704 17 32111216 to 32111232 16 + TSS region transcription start site region 143704
Gm17276 17 32113429 to 32141839 28410 + lincRNA gene predicted gene, 17276
Cpgi8960 17 32113513 to 32114330 817 CpG island CpG island 8960
Tssr143705 17 32113746 to 32113756 10 + TSS region transcription start site region 143705
Tssr143706 17 32113804 to 32113844 40 + TSS region transcription start site region 143706
Gm38585 17 32113837 to 32131492 17655 + lncRNA gene predicted gene, 38585
Tssr143707 17 32113846 to 32113868 22 + TSS region transcription start site region 143707
Notch3 17 32120820 to 32166880 46060 - protein coding gene notch 3