Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:31466878-32067103

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
hlb156 17 24857609 to 31842786 6985177 heritable phenotypic marker heart, lung and blood, 156
Hst6 17 29491045 to 31681724 2190679 heritable phenotypic marker hybrid sterility 6
Del(17Abcg1-Cbs)2Yah 17 31057698 to 31637199 579501 chromosomal deletion deletion, Chr 17, Yann Herault 2
Del(17Abcg1-Rrp1b)5Yey 17 31057698 to 32062865 1005167 chromosomal deletion deletion, Chr 17, Y Eugene Yu 5
Dp(17Abcg1-Rrp1b)3Yey 17 31057698 to 32062865 1005167 chromosomal duplication duplication, Chr 17, Y Eugene Yu 3
Dp(17Abcg1-Cbs)1Yah 17 31057698 to 31637199 579501 chromosomal duplication duplication, Chr 17, Yann Herault 1
Pde9a 17 31386234 to 31476310 90076 + protein coding gene phosphodiesterase 9A
Tssr143669 17 31471042 to 31471047 5 + TSS region transcription start site region 143669
D17Mit191 17 31492136 to 31492230 94 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 191
Wdr4 17 31494323 to 31519974 25651 - protein coding gene WD repeat domain 4
Cpgi8945 17 31511710 to 31512733 1023 CpG island CpG island 8945
Tssr147287 17 31512217 to 31512233 16 - TSS region transcription start site region 147287
Tssr147288 17 31512253 to 31512324 71 - TSS region transcription start site region 147288
Cpgi8946 17 31519867 to 31520352 485 CpG island CpG island 8946
Tssr147289 17 31519916 to 31519980 64 - TSS region transcription start site region 147289
Ndufv3 17 31520115 to 31531326 11211 + protein coding gene NADH:ubiquinone oxidoreductase core subunit V3
Tssr143670 17 31520133 to 31520169 36 + TSS region transcription start site region 143670
Tssr143671 17 31520170 to 31520211 41 + TSS region transcription start site region 143671
Gm38099 17 31532291 to 31535460 3169 - unclassified gene predicted gene, 38099
4833413E03Rik 17 31557126 to 31559113 1987 + lincRNA gene RIKEN cDNA 4833413E03 gene
Tssr5084 17 31558007 to 31558014 7 - TSS region transcription start site region 5084
Tssr147290 17 31558029 to 31558066 37 - TSS region transcription start site region 147290
Tssr147291 17 31558067 to 31558082 15 - TSS region transcription start site region 147291
Tssr147292 17 31559560 to 31559575 15 - TSS region transcription start site region 147292
Cpgi8947 17 31563972 to 31565976 2004 CpG island CpG island 8947
Pknox1 17 31564749 to 31607684 42935 + protein coding gene Pbx/knotted 1 homeobox
Tssr143672 17 31564749 to 31564854 105 + TSS region transcription start site region 143672
Tssr143673 17 31564855 to 31564873 18 + TSS region transcription start site region 143673
Tssr143674 17 31564948 to 31564963 15 + TSS region transcription start site region 143674
Gm24970 17 31564962 to 31565043 81 - miRNA gene predicted gene, 24970
Tssr147293 17 31565681 to 31565691 10 - TSS region transcription start site region 147293
Tssr143675 17 31585881 to 31585912 31 + TSS region transcription start site region 143675
Tssr143676 17 31586370 to 31586374 4 + TSS region transcription start site region 143676
Tssr143677 17 31591719 to 31591759 40 + TSS region transcription start site region 143677
Tssr143678 17 31594822 to 31594839 17 + TSS region transcription start site region 143678
Cbs 17 31612623 to 31637199 24576 - protein coding gene cystathionine beta-synthase
Tssr147294 17 31633079 to 31633101 22 - TSS region transcription start site region 147294
Tssr147295 17 31633103 to 31633152 49 - TSS region transcription start site region 147295
Tssr147296 17 31633154 to 31633176 22 - TSS region transcription start site region 147296
Tssr143679 17 31636028 to 31636030 2 + TSS region transcription start site region 143679
Cpgi8948 17 31636272 to 31637744 1472 CpG island CpG island 8948
Tssr147297 17 31636505 to 31636526 21 - TSS region transcription start site region 147297
Tssr147298 17 31636583 to 31636594 11 - TSS region transcription start site region 147298
Tssr147299 17 31636603 to 31636624 21 - TSS region transcription start site region 147299
Tssr147300 17 31636631 to 31636652 21 - TSS region transcription start site region 147300
Tssr147301 17 31637135 to 31637185 50 - TSS region transcription start site region 147301
Rps2-ps8 17 31643856 to 31644806 950 - pseudogene ribosomal protein S2, pseudogene 8
Tssr147302 17 31644799 to 31644809 10 - TSS region transcription start site region 147302
U2af1 17 31647082 to 31658754 11672 - protein coding gene U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
Tssr147303 17 31654932 to 31654935 3 - TSS region transcription start site region 147303
Cpgi8949 17 31658048 to 31659370 1322 CpG island CpG island 8949
Tssr147304 17 31658729 to 31658766 37 - TSS region transcription start site region 147304
Mnctp1 17 31673397 to 31673397 0 QTL percent monocytes 1
Tssr143680 17 31677924 to 31677939 15 + TSS region transcription start site region 143680
Cryaa 17 31677933 to 31681724 3791 + protein coding gene crystallin, alpha A
Tssr147305 17 31678109 to 31678124 15 - TSS region transcription start site region 147305
Tssr147306 17 31678131 to 31678166 35 - TSS region transcription start site region 147306
Tssr147307 17 31678181 to 31678194 13 - TSS region transcription start site region 147307
Tssr147308 17 31678498 to 31678540 42 - TSS region transcription start site region 147308
D17Rua3 17 31678515 to 31679582 1067 DNA segment DNA segment, Chr 17, Rutgers University 3
Tssr143681 17 31678924 to 31678934 10 + TSS region transcription start site region 143681
Tssr143682 17 31679569 to 31679581 12 + TSS region transcription start site region 143682
Tssr143683 17 31679639 to 31679655 16 + TSS region transcription start site region 143683
Tssr143684 17 31681002 to 31681020 18 + TSS region transcription start site region 143684
Tssr143685 17 31681042 to 31681068 26 + TSS region transcription start site region 143685
Tssr143686 17 31681143 to 31681152 9 + TSS region transcription start site region 143686
Tssr143687 17 31681161 to 31681174 13 + TSS region transcription start site region 143687
Tssr5085 17 31681261 to 31681286 25 + TSS region transcription start site region 5085
Tssr147309 17 31681270 to 31681294 24 - TSS region transcription start site region 147309
Tssr143688 17 31681295 to 31681299 4 + TSS region transcription start site region 143688
Tssr143689 17 31681318 to 31681331 13 + TSS region transcription start site region 143689
Tssr5086 17 31681375 to 31681391 16 + TSS region transcription start site region 5086
Tssr143690 17 31681504 to 31681512 8 + TSS region transcription start site region 143690
Tssr147310 17 31681530 to 31681537 7 - TSS region transcription start site region 147310
Tssr147311 17 31681595 to 31681603 8 - TSS region transcription start site region 147311
Tssr143691 17 31681606 to 31681615 9 + TSS region transcription start site region 143691
Tssr143692 17 31681660 to 31681677 17 + TSS region transcription start site region 143692
Tssr143693 17 31681684 to 31681699 15 + TSS region transcription start site region 143693
Tssr147312 17 31681717 to 31681724 7 - TSS region transcription start site region 147312
Tssr147313 17 31684307 to 31684355 48 - TSS region transcription start site region 147313
Tssr147314 17 31690424 to 31690426 2 - TSS region transcription start site region 147314
Tssr147315 17 31692986 to 31693005 19 - TSS region transcription start site region 147315
Cpgi8950 17 31693374 to 31693768 394 CpG island CpG island 8950
D17Jcs77 17 31694351 to 31694553 202 DNA segment DNA segment, Chr 17, John C. Schimenti 77
Cpgi8951 17 31705381 to 31705660 279 CpG island CpG island 8951
Gm30187 17 31708196 to 31714241 6045 + lncRNA gene predicted gene, 30187
Gm30255 17 31726918 to 31731520 4602 + lncRNA gene predicted gene, 30255
Tssr147316 17 31729550 to 31729553 3 - TSS region transcription start site region 147316
Cpgi8952 17 31732207 to 31732857 650 CpG island CpG island 8952
Gm30316 17 31735708 to 31755634 19926 + lncRNA gene predicted gene, 30316
Cpgi8953 17 31766878 to 31767103 225 CpG island CpG island 8953
Tssr147317 17 31766941 to 31766945 4 - TSS region transcription start site region 147317
Gm49999 17 31789504 to 31793310 3806 + lincRNA gene predicted gene, 49999
Tssr147318 17 31790635 to 31790656 21 - TSS region transcription start site region 147318
Cpgi8954 17 31791606 to 31792032 426 CpG island CpG island 8954
Tssr147319 17 31808044 to 31808065 21 - TSS region transcription start site region 147319
Tssr143694 17 31808462 to 31808467 5 + TSS region transcription start site region 143694
Cpgi8955 17 31809963 to 31810284 321 CpG island CpG island 8955
Tssr147320 17 31811454 to 31811465 11 - TSS region transcription start site region 147320
Tssr147321 17 31819305 to 31819312 7 - TSS region transcription start site region 147321
Tssr143695 17 31820348 to 31820357 9 + TSS region transcription start site region 143695
Gm41563 17 31825354 to 31828784 3430 + lncRNA gene predicted gene, 41563
Gm41564 17 31834787 to 31837596 2809 + lncRNA gene predicted gene, 41564
Tssr147322 17 31841162 to 31841165 3 - TSS region transcription start site region 147322
repro17 17 31842678 to 47722705 15880027 heritable phenotypic marker reproductive mutant 17, JAX Reproductive Mutagenesis Program
Pcir4 17 31842678 to 31842786 108 QTL periosteal circumference 4
Lgth9 17 31842678 to 31842786 108 QTL body length 9
Tbbmd7 17 31842678 to 31842786 108 QTL total body bone mineral density 7
Fembrs4 17 31842678 to 31842786 108 QTL femur breaking strength 4
D17Mit175 17 31842678 to 31842786 108 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 175
Blmpf1 17 31842678 to 37333884 5491206 QTL bleomycin-induced pulmonary fibrosis 1
Sik1 17 31844250 to 31855792 11542 - protein coding gene salt inducible kinase 1
Tssr147323 17 31844373 to 31844378 5 - TSS region transcription start site region 147323
Tssr147324 17 31844510 to 31844515 5 - TSS region transcription start site region 147324
Tssr147325 17 31848832 to 31848847 15 - TSS region transcription start site region 147325
Tssr147326 17 31849571 to 31849597 26 - TSS region transcription start site region 147326
Tssr147327 17 31850004 to 31850017 13 - TSS region transcription start site region 147327
Tssr147328 17 31850054 to 31850074 20 - TSS region transcription start site region 147328
Cpgi8956 17 31854764 to 31856662 1898 CpG island CpG island 8956
Tssr143696 17 31854894 to 31854911 17 + TSS region transcription start site region 143696
Tssr147329 17 31855760 to 31855774 14 - TSS region transcription start site region 147329
Tssr147330 17 31855782 to 31855802 20 - TSS region transcription start site region 147330
Tssr147331 17 31855814 to 31855827 13 - TSS region transcription start site region 147331
Tssr147332 17 31855829 to 31855838 9 - TSS region transcription start site region 147332
Tssr147333 17 31856591 to 31856613 22 - TSS region transcription start site region 147333
Tssr147334 17 31858053 to 31858069 16 - TSS region transcription start site region 147334
Tssr147335 17 31858080 to 31858089 9 - TSS region transcription start site region 147335
Gm41565 17 31864309 to 31865758 1449 - lncRNA gene predicted gene, 41565
Gm30509 17 31867118 to 31871103 3985 - lncRNA gene predicted gene, 30509
Tssr147336 17 31870790 to 31870793 3 - TSS region transcription start site region 147336
Tssr147337 17 31871028 to 31871037 9 - TSS region transcription start site region 147337
Gm50000 17 31896419 to 31899178 2759 - lincRNA gene predicted gene, 50000
Gm41566 17 31897934 to 31899392 1458 + lncRNA gene predicted gene, 41566
Tssr147338 17 31905850 to 31905870 20 - TSS region transcription start site region 147338
2310015A16Rik 17 31907877 to 31912448 4571 - lncRNA gene RIKEN cDNA 2310015A16 gene
Gm30571 17 31912567 to 31913803 1236 + lncRNA gene predicted gene, 30571
Tssr143697 17 31912657 to 31912673 16 + TSS region transcription start site region 143697
Tssr143698 17 31912728 to 31912737 9 + TSS region transcription start site region 143698
Tssr143699 17 31930562 to 31930565 3 + TSS region transcription start site region 143699
Hsf2bp 17 31944769 to 32034508 89739 - protein coding gene heat shock transcription factor 2 binding protein
Gm17572 17 31950549 to 31950968 419 + pseudogene predicted gene, 17572
Tssr143700 17 32007100 to 32007133 33 + TSS region transcription start site region 143700
Tssr147339 17 32021940 to 32021948 8 - TSS region transcription start site region 147339
Gm25883 17 32027938 to 32028208 270 + unclassified non-coding RNA gene predicted gene, 25883
Cpgi8957 17 32034391 to 32034664 273 CpG island CpG island 8957
Tssr147340 17 32034493 to 32034523 30 - TSS region transcription start site region 147340
Tssr147341 17 32034530 to 32034539 9 - TSS region transcription start site region 147341
Cpgi8958 17 32035736 to 32036985 1249 CpG island CpG island 8958
Tssr143701 17 32036098 to 32036113 15 + TSS region transcription start site region 143701
Rrp1b 17 32036162 to 32062865 26703 + protein coding gene ribosomal RNA processing 1 homolog B (S. cerevisiae)
Tssr147342 17 32036314 to 32036330 16 - TSS region transcription start site region 147342
Tssr143702 17 32036399 to 32036453 54 + TSS region transcription start site region 143702