Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:31434916-31604980

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pde9a 17 31386234 to 31476310 90076 + protein coding gene phosphodiesterase 9A
Tssr143667 17 31442914 to 31442928 14 + TSS region transcription start site region 143667
Tssr143668 17 31442938 to 31442953 15 + TSS region transcription start site region 143668
Tssr143669 17 31471042 to 31471047 5 + TSS region transcription start site region 143669
D17Mit191 17 31492136 to 31492230 94 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 191
Wdr4 17 31494323 to 31519974 25651 - protein coding gene WD repeat domain 4
Cpgi8945 17 31511710 to 31512733 1023 CpG island CpG island 8945
Tssr147287 17 31512217 to 31512233 16 - TSS region transcription start site region 147287
Tssr147288 17 31512253 to 31512324 71 - TSS region transcription start site region 147288
Cpgi8946 17 31519867 to 31520352 485 CpG island CpG island 8946
Tssr147289 17 31519916 to 31519980 64 - TSS region transcription start site region 147289
Ndufv3 17 31520115 to 31531326 11211 + protein coding gene NADH:ubiquinone oxidoreductase core subunit V3
Tssr143670 17 31520133 to 31520169 36 + TSS region transcription start site region 143670
Tssr143671 17 31520170 to 31520211 41 + TSS region transcription start site region 143671
Gm38099 17 31532291 to 31535460 3169 - unclassified gene predicted gene, 38099
4833413E03Rik 17 31557126 to 31559113 1987 + lincRNA gene RIKEN cDNA 4833413E03 gene
Tssr5084 17 31558007 to 31558014 7 - TSS region transcription start site region 5084
Tssr147290 17 31558029 to 31558066 37 - TSS region transcription start site region 147290
Tssr147291 17 31558067 to 31558082 15 - TSS region transcription start site region 147291
Tssr147292 17 31559560 to 31559575 15 - TSS region transcription start site region 147292
Cpgi8947 17 31563972 to 31565976 2004 CpG island CpG island 8947
Tssr143672 17 31564749 to 31564854 105 + TSS region transcription start site region 143672
Pknox1 17 31564749 to 31607684 42935 + protein coding gene Pbx/knotted 1 homeobox
Tssr143673 17 31564855 to 31564873 18 + TSS region transcription start site region 143673
Tssr143674 17 31564948 to 31564963 15 + TSS region transcription start site region 143674
Gm24970 17 31564962 to 31565043 81 - miRNA gene predicted gene, 24970
Tssr147293 17 31565681 to 31565691 10 - TSS region transcription start site region 147293
Tssr143675 17 31585881 to 31585912 31 + TSS region transcription start site region 143675
Tssr143676 17 31586370 to 31586374 4 + TSS region transcription start site region 143676
Tssr143677 17 31591719 to 31591759 40 + TSS region transcription start site region 143677
Tssr143678 17 31594822 to 31594839 17 + TSS region transcription start site region 143678