Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:31399734-31772693

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hst6 17 29491045 to 31681724 2190679 heritable phenotypic marker hybrid sterility 6
Del(17Abcg1-Cbs)2Yah 17 31057698 to 31637199 579501 chromosomal deletion deletion, Chr 17, Yann Herault 2
Dp(17Abcg1-Cbs)1Yah 17 31057698 to 31637199 579501 chromosomal duplication duplication, Chr 17, Yann Herault 1
Pde9a 17 31386234 to 31476310 90076 + protein coding gene phosphodiesterase 9A
Gm9902 17 31432999 to 31434831 1832 unclassified gene predicted gene 9902
Tssr143665 17 31433054 to 31433063 9 + TSS region transcription start site region 143665
Tssr143666 17 31433099 to 31433156 57 + TSS region transcription start site region 143666
Tssr143667 17 31442914 to 31442928 14 + TSS region transcription start site region 143667
Tssr143668 17 31442938 to 31442953 15 + TSS region transcription start site region 143668
Tssr143669 17 31471042 to 31471047 5 + TSS region transcription start site region 143669
D17Mit191 17 31492136 to 31492230 94 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 191
Wdr4 17 31494323 to 31519974 25651 - protein coding gene WD repeat domain 4
Cpgi8945 17 31511710 to 31512733 1023 CpG island CpG island 8945
Tssr147287 17 31512217 to 31512233 16 - TSS region transcription start site region 147287
Tssr147288 17 31512253 to 31512324 71 - TSS region transcription start site region 147288
Cpgi8946 17 31519867 to 31520352 485 CpG island CpG island 8946
Tssr147289 17 31519916 to 31519980 64 - TSS region transcription start site region 147289
Ndufv3 17 31520115 to 31531326 11211 + protein coding gene NADH:ubiquinone oxidoreductase core subunit V3
Tssr143670 17 31520133 to 31520169 36 + TSS region transcription start site region 143670
Tssr143671 17 31520170 to 31520211 41 + TSS region transcription start site region 143671
Gm38099 17 31532291 to 31535460 3169 - unclassified gene predicted gene, 38099
4833413E03Rik 17 31557126 to 31559113 1987 + lincRNA gene RIKEN cDNA 4833413E03 gene
Tssr5084 17 31558007 to 31558014 7 - TSS region transcription start site region 5084
Tssr147290 17 31558029 to 31558066 37 - TSS region transcription start site region 147290
Tssr147291 17 31558067 to 31558082 15 - TSS region transcription start site region 147291
Tssr147292 17 31559560 to 31559575 15 - TSS region transcription start site region 147292
Cpgi8947 17 31563972 to 31565976 2004 CpG island CpG island 8947
Pknox1 17 31564749 to 31607684 42935 + protein coding gene Pbx/knotted 1 homeobox
Tssr143672 17 31564749 to 31564854 105 + TSS region transcription start site region 143672
Tssr143673 17 31564855 to 31564873 18 + TSS region transcription start site region 143673
Tssr143674 17 31564948 to 31564963 15 + TSS region transcription start site region 143674
Gm24970 17 31564962 to 31565043 81 - miRNA gene predicted gene, 24970
Tssr147293 17 31565681 to 31565691 10 - TSS region transcription start site region 147293
Tssr143675 17 31585881 to 31585912 31 + TSS region transcription start site region 143675
Tssr143676 17 31586370 to 31586374 4 + TSS region transcription start site region 143676
Tssr143677 17 31591719 to 31591759 40 + TSS region transcription start site region 143677
Tssr143678 17 31594822 to 31594839 17 + TSS region transcription start site region 143678
Cbs 17 31612623 to 31637199 24576 - protein coding gene cystathionine beta-synthase
Tssr147294 17 31633079 to 31633101 22 - TSS region transcription start site region 147294
Tssr147295 17 31633103 to 31633152 49 - TSS region transcription start site region 147295
Tssr147296 17 31633154 to 31633176 22 - TSS region transcription start site region 147296
Tssr143679 17 31636028 to 31636030 2 + TSS region transcription start site region 143679
Cpgi8948 17 31636272 to 31637744 1472 CpG island CpG island 8948
Tssr147297 17 31636505 to 31636526 21 - TSS region transcription start site region 147297
Tssr147298 17 31636583 to 31636594 11 - TSS region transcription start site region 147298
Tssr147299 17 31636603 to 31636624 21 - TSS region transcription start site region 147299
Tssr147300 17 31636631 to 31636652 21 - TSS region transcription start site region 147300
Tssr147301 17 31637135 to 31637185 50 - TSS region transcription start site region 147301
Rps2-ps8 17 31643856 to 31644806 950 - pseudogene ribosomal protein S2, pseudogene 8
Tssr147302 17 31644799 to 31644809 10 - TSS region transcription start site region 147302
U2af1 17 31647082 to 31658754 11672 - protein coding gene U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
Tssr147303 17 31654932 to 31654935 3 - TSS region transcription start site region 147303
Cpgi8949 17 31658048 to 31659370 1322 CpG island CpG island 8949
Tssr147304 17 31658729 to 31658766 37 - TSS region transcription start site region 147304
Mnctp1 17 31673397 to 31673397 0 QTL percent monocytes 1
Tssr143680 17 31677924 to 31677939 15 + TSS region transcription start site region 143680
Cryaa 17 31677933 to 31681724 3791 + protein coding gene crystallin, alpha A
Tssr147305 17 31678109 to 31678124 15 - TSS region transcription start site region 147305
Tssr147306 17 31678131 to 31678166 35 - TSS region transcription start site region 147306
Tssr147307 17 31678181 to 31678194 13 - TSS region transcription start site region 147307
Tssr147308 17 31678498 to 31678540 42 - TSS region transcription start site region 147308
D17Rua3 17 31678515 to 31679582 1067 DNA segment DNA segment, Chr 17, Rutgers University 3
Tssr143681 17 31678924 to 31678934 10 + TSS region transcription start site region 143681
Tssr143682 17 31679569 to 31679581 12 + TSS region transcription start site region 143682
Tssr143683 17 31679639 to 31679655 16 + TSS region transcription start site region 143683
Tssr143684 17 31681002 to 31681020 18 + TSS region transcription start site region 143684
Tssr143685 17 31681042 to 31681068 26 + TSS region transcription start site region 143685
Tssr143686 17 31681143 to 31681152 9 + TSS region transcription start site region 143686
Tssr143687 17 31681161 to 31681174 13 + TSS region transcription start site region 143687
Tssr5085 17 31681261 to 31681286 25 + TSS region transcription start site region 5085
Tssr147309 17 31681270 to 31681294 24 - TSS region transcription start site region 147309
Tssr143688 17 31681295 to 31681299 4 + TSS region transcription start site region 143688
Tssr143689 17 31681318 to 31681331 13 + TSS region transcription start site region 143689
Tssr5086 17 31681375 to 31681391 16 + TSS region transcription start site region 5086
Tssr143690 17 31681504 to 31681512 8 + TSS region transcription start site region 143690
Tssr147310 17 31681530 to 31681537 7 - TSS region transcription start site region 147310
Tssr147311 17 31681595 to 31681603 8 - TSS region transcription start site region 147311
Tssr143691 17 31681606 to 31681615 9 + TSS region transcription start site region 143691
Tssr143692 17 31681660 to 31681677 17 + TSS region transcription start site region 143692
Tssr143693 17 31681684 to 31681699 15 + TSS region transcription start site region 143693
Tssr147312 17 31681717 to 31681724 7 - TSS region transcription start site region 147312
Tssr147313 17 31684307 to 31684355 48 - TSS region transcription start site region 147313
Tssr147314 17 31690424 to 31690426 2 - TSS region transcription start site region 147314
Tssr147315 17 31692986 to 31693005 19 - TSS region transcription start site region 147315
Cpgi8950 17 31693374 to 31693768 394 CpG island CpG island 8950
D17Jcs77 17 31694351 to 31694553 202 DNA segment DNA segment, Chr 17, John C. Schimenti 77
Cpgi8951 17 31705381 to 31705660 279 CpG island CpG island 8951
Gm30187 17 31708196 to 31714241 6045 + lncRNA gene predicted gene, 30187
Gm30255 17 31726918 to 31731520 4602 + lncRNA gene predicted gene, 30255
Tssr147316 17 31729550 to 31729553 3 - TSS region transcription start site region 147316
Cpgi8952 17 31732207 to 31732857 650 CpG island CpG island 8952
Gm30316 17 31735708 to 31755634 19926 + lncRNA gene predicted gene, 30316
Cpgi8953 17 31766878 to 31767103 225 CpG island CpG island 8953
Tssr147317 17 31766941 to 31766945 4 - TSS region transcription start site region 147317