Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:3118110-3391120

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scaf8 17 3114972 to 3198859 83887 + protein coding gene SR-related CTD-associated factor 8
Gm49798 17 3124555 to 3124801 246 - pseudogene predicted gene, 49798
Gm46578 17 3130158 to 3130512 354 - pseudogene predicted gene, 46578
D17Brg3 17 3132310 to 3132498 188 DNA segment DNA segment, Chr 17, David E. Bergstrom 3
Tssr4980 17 3155805 to 3155810 5 + TSS region transcription start site region 4980
Gm6242 17 3155856 to 3156365 509 + pseudogene predicted gene 6242
Tssr146280 17 3156355 to 3156366 11 - TSS region transcription start site region 146280
Tssr146281 17 3157874 to 3157889 15 - TSS region transcription start site region 146281
Tssr142354 17 3167022 to 3167027 5 + TSS region transcription start site region 142354
Tssr142355 17 3188637 to 3188651 14 + TSS region transcription start site region 142355
Gm49797 17 3198110 to 3311120 113010 + lincRNA gene predicted gene, 49797
Tssr142356 17 3199601 to 3199605 4 + TSS region transcription start site region 142356
Tssr142357 17 3210506 to 3210510 4 + TSS region transcription start site region 142357
D17Brg6 17 3225374 to 3225610 236 DNA segment DNA segment, Chr 17, David E. Bergstrom 6
Tssr142358 17 3239846 to 3239850 4 + TSS region transcription start site region 142358
Gm34035 17 3270681 to 3283270 12589 - lincRNA gene predicted gene, 34035
Tssr146282 17 3283165 to 3283178 13 - TSS region transcription start site region 146282
Tssr146283 17 3283186 to 3283197 11 - TSS region transcription start site region 146283
Tssr146284 17 3283244 to 3283267 23 - TSS region transcription start site region 146284
Tssr146285 17 3283276 to 3283284 8 - TSS region transcription start site region 146285
Gm6475 17 3312250 to 3314185 1935 - pseudogene predicted gene 6475
Cpgi8545 17 3313922 to 3314826 904 CpG island CpG island 8545
Tssr146286 17 3314177 to 3314221 44 - TSS region transcription start site region 146286
Cpgi8546 17 3325199 to 3325520 321 CpG island CpG island 8546
D17Brg11 17 3325211 to 3325491 280 DNA segment DNA segment, Chr 17, David E. Bergstrom 11
Cpgi8547 17 3326057 to 3327344 1287 CpG island CpG island 8547
Tiam2 17 3326296 to 3519397 193101 + protein coding gene T cell lymphoma invasion and metastasis 2
Tssr142359 17 3326552 to 3326585 33 + TSS region transcription start site region 142359
Tssr142360 17 3326586 to 3326595 9 + TSS region transcription start site region 142360
Tssr142361 17 3326677 to 3326684 7 + TSS region transcription start site region 142361
Gm49221 17 3346711 to 3347067 356 - pseudogene predicted gene, 49221
D17Mit267 17 3354862 to 3355007 145 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-267