Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:31136623-31456646

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tff2 17 31141062 to 31144282 3220 - protein coding gene trefoil factor 2 (spasmolytic protein 1)
Tssr5067 17 31143254 to 31143271 17 - TSS region transcription start site region 5067
Tssr147271 17 31144251 to 31144265 14 - TSS region transcription start site region 147271
Tssr147272 17 31144271 to 31144288 17 - TSS region transcription start site region 147272
Gm15318 17 31152752 to 31163052 10300 + antisense lncRNA gene predicted gene 15318
Tssr5068 17 31152792 to 31152829 37 + TSS region transcription start site region 5068
Tssr5069 17 31152864 to 31152875 11 + TSS region transcription start site region 5069
Tssr5070 17 31161394 to 31161398 4 + TSS region transcription start site region 5070
Tff1 17 31161396 to 31165053 3657 - protein coding gene trefoil factor 1
Tssr5071 17 31161431 to 31161436 5 - TSS region transcription start site region 5071
Tssr5072 17 31161478 to 31161484 6 - TSS region transcription start site region 5072
Tssr5073 17 31161513 to 31161525 12 - TSS region transcription start site region 5073
Tssr5074 17 31161536 to 31161543 7 - TSS region transcription start site region 5074
Tssr5075 17 31161536 to 31161567 31 + TSS region transcription start site region 5075
Tssr5076 17 31162684 to 31162693 9 - TSS region transcription start site region 5076
Tssr5077 17 31162759 to 31162782 23 - TSS region transcription start site region 5077
Tssr5078 17 31162795 to 31162811 16 - TSS region transcription start site region 5078
Tssr147273 17 31165045 to 31165053 8 - TSS region transcription start site region 147273
Tmprss3 17 31179272 to 31198975 19703 - protein coding gene transmembrane protease, serine 3
Tssr5079 17 31186221 to 31186258 37 - TSS region transcription start site region 5079
Tssr5080 17 31186620 to 31186656 36 - TSS region transcription start site region 5080
Tssr5081 17 31198906 to 31198912 6 - TSS region transcription start site region 5081
Tssr147274 17 31198924 to 31198954 30 - TSS region transcription start site region 147274
Tssr147275 17 31198958 to 31198976 18 - TSS region transcription start site region 147275
Tssr147276 17 31199008 to 31199012 4 - TSS region transcription start site region 147276
Ubash3a 17 31207873 to 31242202 34329 + protein coding gene ubiquitin associated and SH3 domain containing, A
Tssr143654 17 31208049 to 31208112 63 + TSS region transcription start site region 143654
Tssr147277 17 31208797 to 31208805 8 - TSS region transcription start site region 147277
Tssr147278 17 31208813 to 31208835 22 - TSS region transcription start site region 147278
Tssr143655 17 31212106 to 31212121 15 + TSS region transcription start site region 143655
Tssr143656 17 31247323 to 31247334 11 + TSS region transcription start site region 143656
Rsph1 17 31255019 to 31277356 22337 - protein coding gene radial spoke head 1 homolog (Chlamydomonas)
Gm30090 17 31258196 to 31259681 1485 + lncRNA gene predicted gene, 30090
Tssr147279 17 31260508 to 31260512 4 - TSS region transcription start site region 147279
Tssr147280 17 31265868 to 31265878 10 - TSS region transcription start site region 147280
Tssr147281 17 31268354 to 31268358 4 - TSS region transcription start site region 147281
Cpgi8942 17 31276927 to 31277545 618 CpG island CpG island 8942
Tssr147282 17 31277257 to 31277325 68 - TSS region transcription start site region 147282
Tssr147283 17 31277327 to 31277352 25 - TSS region transcription start site region 147283
Tssr5082 17 31277378 to 31277382 4 - TSS region transcription start site region 5082
Tssr147284 17 31277389 to 31277404 15 - TSS region transcription start site region 147284
Gm8437 17 31278503 to 31299821 21318 unclassified gene predicted gene 8437
Gm30139 17 31285484 to 31292441 6957 - lncRNA gene predicted gene, 30139
Slc37a1 17 31295483 to 31350696 55213 + protein coding gene solute carrier family 37 (glycerol-3-phosphate transporter), member 1
Cpgi8943 17 31295770 to 31296893 1123 CpG island CpG island 8943
Tssr5083 17 31295806 to 31295819 13 + TSS region transcription start site region 5083
Tssr143657 17 31296191 to 31296253 62 + TSS region transcription start site region 143657
Tssr147285 17 31296623 to 31296646 23 - TSS region transcription start site region 147285
Tssr147286 17 31296650 to 31296666 16 - TSS region transcription start site region 147286
Tssr143658 17 31296722 to 31296794 72 + TSS region transcription start site region 143658
Tssr143659 17 31296796 to 31296816 20 + TSS region transcription start site region 143659
Tssr143660 17 31296986 to 31296999 13 + TSS region transcription start site region 143660
Tssr143661 17 31319857 to 31319882 25 + TSS region transcription start site region 143661
D17Mit146.1 17 31320504 to 31320668 164 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 146.1
D17Mit146 17 31320646 to 31320751 105 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 146
Tssr143662 17 31322140 to 31322153 13 + TSS region transcription start site region 143662
Cpgi8944 17 31385959 to 31386777 818 CpG island CpG island 8944
Tssr143663 17 31386218 to 31386238 20 + TSS region transcription start site region 143663
Pde9a 17 31386234 to 31476310 90076 + protein coding gene phosphodiesterase 9A
Tssr143664 17 31386244 to 31386280 36 + TSS region transcription start site region 143664
Gm9902 17 31432999 to 31434831 1832 unclassified gene predicted gene 9902
Tssr143665 17 31433054 to 31433063 9 + TSS region transcription start site region 143665
Tssr143666 17 31433099 to 31433156 57 + TSS region transcription start site region 143666
Tssr143667 17 31442914 to 31442928 14 + TSS region transcription start site region 143667
Tssr143668 17 31442938 to 31442953 15 + TSS region transcription start site region 143668