Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:30955306-31299611

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Umodl1 17 30954679 to 31010708 56029 + protein coding gene uromodulin-like 1
Gm24026 17 30967197 to 30967294 97 + miRNA gene predicted gene, 24026
Tssr143633 17 30984078 to 30984089 11 + TSS region transcription start site region 143633
Tssr143634 17 30984090 to 30984100 10 + TSS region transcription start site region 143634
Tssr143635 17 31001936 to 31001942 6 + TSS region transcription start site region 143635
Tssr147268 17 31039700 to 31039746 46 - TSS region transcription start site region 147268
Tssr143636 17 31039860 to 31039865 5 + TSS region transcription start site region 143636
Cpgi8940 17 31057265 to 31058361 1096 CpG island CpG island 8940
Tssr143637 17 31057686 to 31057699 13 + TSS region transcription start site region 143637
Dp(17Abcg1-Cbs)1Yah 17 31057698 to 31637199 579501 chromosomal duplication duplication, Chr 17, Yann Herault 1
Del(17Abcg1-Cbs)2Yah 17 31057698 to 31637199 579501 chromosomal deletion deletion, Chr 17, Yann Herault 2
Del(17Abcg1-Rrp1b)5Yey 17 31057698 to 32062865 1005167 chromosomal deletion deletion, Chr 17, Y Eugene Yu 5
Abcg1 17 31057698 to 31115777 58079 + protein coding gene ATP binding cassette subfamily G member 1
Dp(17Abcg1-Rrp1b)3Yey 17 31057698 to 32062865 1005167 chromosomal duplication duplication, Chr 17, Y Eugene Yu 3
Tssr143638 17 31057704 to 31057713 9 + TSS region transcription start site region 143638
Tssr143639 17 31057719 to 31057734 15 + TSS region transcription start site region 143639
Tssr143640 17 31057740 to 31057749 9 + TSS region transcription start site region 143640
Tssr143641 17 31057768 to 31057778 10 + TSS region transcription start site region 143641
Gm25447 17 31059604 to 31059731 127 + rRNA gene predicted gene, 25447
Tssr143642 17 31067273 to 31067291 18 + TSS region transcription start site region 143642
Tssr143643 17 31067293 to 31067299 6 + TSS region transcription start site region 143643
Tssr143644 17 31067349 to 31067358 9 + TSS region transcription start site region 143644
Tssr143645 17 31069890 to 31069908 18 + TSS region transcription start site region 143645
Cpgi8941 17 31073306 to 31073683 377 CpG island CpG island 8941
Tssr147269 17 31074690 to 31074711 21 - TSS region transcription start site region 147269
Tssr143646 17 31098017 to 31098020 3 + TSS region transcription start site region 143646
Tssr143647 17 31104107 to 31104116 9 + TSS region transcription start site region 143647
Tssr143648 17 31106091 to 31106105 14 + TSS region transcription start site region 143648
Tssr143649 17 31108403 to 31108414 11 + TSS region transcription start site region 143649
Tssr143650 17 31111006 to 31111025 19 + TSS region transcription start site region 143650
Tssr143651 17 31114529 to 31114533 4 + TSS region transcription start site region 143651
Tssr143652 17 31115025 to 31115057 32 + TSS region transcription start site region 143652
Tssr143653 17 31115531 to 31115543 12 + TSS region transcription start site region 143653
Tff3 17 31125306 to 31129611 4305 - protein coding gene trefoil factor 3, intestinal
Tssr147270 17 31129602 to 31129619 17 - TSS region transcription start site region 147270
Tff2 17 31141062 to 31144282 3220 - protein coding gene trefoil factor 2 (spasmolytic protein 1)
Tssr5067 17 31143254 to 31143271 17 - TSS region transcription start site region 5067
Tssr147271 17 31144251 to 31144265 14 - TSS region transcription start site region 147271
Tssr147272 17 31144271 to 31144288 17 - TSS region transcription start site region 147272
Gm15318 17 31152752 to 31163052 10300 + antisense lncRNA gene predicted gene 15318
Tssr5068 17 31152792 to 31152829 37 + TSS region transcription start site region 5068
Tssr5069 17 31152864 to 31152875 11 + TSS region transcription start site region 5069
Tssr5070 17 31161394 to 31161398 4 + TSS region transcription start site region 5070
Tff1 17 31161396 to 31165053 3657 - protein coding gene trefoil factor 1
Tssr5071 17 31161431 to 31161436 5 - TSS region transcription start site region 5071
Tssr5072 17 31161478 to 31161484 6 - TSS region transcription start site region 5072
Tssr5073 17 31161513 to 31161525 12 - TSS region transcription start site region 5073
Tssr5074 17 31161536 to 31161543 7 - TSS region transcription start site region 5074
Tssr5075 17 31161536 to 31161567 31 + TSS region transcription start site region 5075
Tssr5076 17 31162684 to 31162693 9 - TSS region transcription start site region 5076
Tssr5077 17 31162759 to 31162782 23 - TSS region transcription start site region 5077
Tssr5078 17 31162795 to 31162811 16 - TSS region transcription start site region 5078
Tssr147273 17 31165045 to 31165053 8 - TSS region transcription start site region 147273
Tmprss3 17 31179272 to 31198975 19703 - protein coding gene transmembrane protease, serine 3
Tssr5079 17 31186221 to 31186258 37 - TSS region transcription start site region 5079
Tssr5080 17 31186620 to 31186656 36 - TSS region transcription start site region 5080
Tssr5081 17 31198906 to 31198912 6 - TSS region transcription start site region 5081
Tssr147274 17 31198924 to 31198954 30 - TSS region transcription start site region 147274
Tssr147275 17 31198958 to 31198976 18 - TSS region transcription start site region 147275
Tssr147276 17 31199008 to 31199012 4 - TSS region transcription start site region 147276
Ubash3a 17 31207873 to 31242202 34329 + protein coding gene ubiquitin associated and SH3 domain containing, A
Tssr143654 17 31208049 to 31208112 63 + TSS region transcription start site region 143654
Tssr147277 17 31208797 to 31208805 8 - TSS region transcription start site region 147277
Tssr147278 17 31208813 to 31208835 22 - TSS region transcription start site region 147278
Tssr143655 17 31212106 to 31212121 15 + TSS region transcription start site region 143655
Tssr143656 17 31247323 to 31247334 11 + TSS region transcription start site region 143656
Rsph1 17 31255019 to 31277356 22337 - protein coding gene radial spoke head 1 homolog (Chlamydomonas)
Gm30090 17 31258196 to 31259681 1485 + lncRNA gene predicted gene, 30090
Tssr147279 17 31260508 to 31260512 4 - TSS region transcription start site region 147279
Tssr147280 17 31265868 to 31265878 10 - TSS region transcription start site region 147280
Tssr147281 17 31268354 to 31268358 4 - TSS region transcription start site region 147281
Cpgi8942 17 31276927 to 31277545 618 CpG island CpG island 8942
Tssr147282 17 31277257 to 31277325 68 - TSS region transcription start site region 147282
Tssr147283 17 31277327 to 31277352 25 - TSS region transcription start site region 147283
Tssr5082 17 31277378 to 31277382 4 - TSS region transcription start site region 5082
Tssr147284 17 31277389 to 31277404 15 - TSS region transcription start site region 147284
Gm8437 17 31278503 to 31299821 21318 unclassified gene predicted gene 8437
Gm30139 17 31285484 to 31292441 6957 - lncRNA gene predicted gene, 30139
Slc37a1 17 31295483 to 31350696 55213 + protein coding gene solute carrier family 37 (glycerol-3-phosphate transporter), member 1
Cpgi8943 17 31295770 to 31296893 1123 CpG island CpG island 8943
Tssr5083 17 31295806 to 31295819 13 + TSS region transcription start site region 5083
Tssr143657 17 31296191 to 31296253 62 + TSS region transcription start site region 143657
Tssr147285 17 31296623 to 31296646 23 - TSS region transcription start site region 147285
Tssr147286 17 31296650 to 31296666 16 - TSS region transcription start site region 147286
Tssr143658 17 31296722 to 31296794 72 + TSS region transcription start site region 143658
Tssr143659 17 31296796 to 31296816 20 + TSS region transcription start site region 143659
Tssr143660 17 31296986 to 31296999 13 + TSS region transcription start site region 143660