Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:30657686-31457699

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dnah8 17 30626936 to 30875762 248826 + protein coding gene dynein, axonemal, heavy chain 8
Tssr143623 17 30678568 to 30678573 5 + TSS region transcription start site region 143623
Tssr143624 17 30684821 to 30684826 5 + TSS region transcription start site region 143624
D17Mit229 17 30719705 to 30719820 115 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 229
Tssr143625 17 30747722 to 30747725 3 + TSS region transcription start site region 143625
D17Mit199 17 30763470 to 30763594 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 199
Mrdq1 17 30768929 to 47728778 16959849 QTL modifier of retinal degeneration QTL 1
Gm24661 17 30782026 to 30782129 103 - snRNA gene predicted gene, 24661
Tssr5065 17 30794198 to 30794202 4 + TSS region transcription start site region 5065
Tssr143626 17 30800667 to 30800672 5 + TSS region transcription start site region 143626
Tssr143627 17 30845709 to 30845710 1 + TSS region transcription start site region 143627
Gm41561 17 30848427 to 30859232 10805 - lncRNA gene predicted gene, 41561
Tssr143628 17 30871284 to 30871310 26 + TSS region transcription start site region 143628
Gm9937 17 30871403 to 30875318 3915 unclassified gene predicted gene 9937
Cpgi8937 17 30874493 to 30874712 219 CpG island CpG island 8937
Tssr147267 17 30875031 to 30875036 5 - TSS region transcription start site region 147267
Cpgi8938 17 30901459 to 30902297 838 CpG island CpG island 8938
Tssr143629 17 30901558 to 30901568 10 + TSS region transcription start site region 143629
Tssr143630 17 30901811 to 30901826 15 + TSS region transcription start site region 143630
Tssr5066 17 30901843 to 30901846 3 + TSS region transcription start site region 5066
Glp1r 17 30901867 to 30936510 34643 + protein coding gene glucagon-like peptide 1 receptor
Tir7 17 30904398 to 30904522 124 QTL trypanosome infection response 7
D17Mit81 17 30904398 to 30904522 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 81
D17Dcr3 17 30904405 to 30904521 116 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 3
Tssr143631 17 30919583 to 30919615 32 + TSS region transcription start site region 143631
1810057I12Rik 17 30937001 to 30937530 529 unclassified gene RIKEN cDNA 1810057I12 gene
Tssr143632 17 30938554 to 30938557 3 + TSS region transcription start site region 143632
2900001G08Rik 17 30938869 to 30940705 1836 unclassified gene RIKEN cDNA 2900001G08 gene
Cpgi8939 17 30945711 to 30946118 407 CpG island CpG island 8939
Gm41562 17 30945785 to 30951722 5937 + lncRNA gene predicted gene, 41562
Umodl1 17 30954679 to 31010708 56029 + protein coding gene uromodulin-like 1
Gm24026 17 30967197 to 30967294 97 + miRNA gene predicted gene, 24026
Tssr143633 17 30984078 to 30984089 11 + TSS region transcription start site region 143633
Tssr143634 17 30984090 to 30984100 10 + TSS region transcription start site region 143634
Tssr143635 17 31001936 to 31001942 6 + TSS region transcription start site region 143635
Tssr147268 17 31039700 to 31039746 46 - TSS region transcription start site region 147268
Tssr143636 17 31039860 to 31039865 5 + TSS region transcription start site region 143636
Cpgi8940 17 31057265 to 31058361 1096 CpG island CpG island 8940
Tssr143637 17 31057686 to 31057699 13 + TSS region transcription start site region 143637
Dp(17Abcg1-Rrp1b)3Yey 17 31057698 to 32062865 1005167 chromosomal duplication duplication, Chr 17, Y Eugene Yu 3
Dp(17Abcg1-Cbs)1Yah 17 31057698 to 31637199 579501 chromosomal duplication duplication, Chr 17, Yann Herault 1
Del(17Abcg1-Cbs)2Yah 17 31057698 to 31637199 579501 chromosomal deletion deletion, Chr 17, Yann Herault 2
Del(17Abcg1-Rrp1b)5Yey 17 31057698 to 32062865 1005167 chromosomal deletion deletion, Chr 17, Y Eugene Yu 5
Abcg1 17 31057698 to 31115777 58079 + protein coding gene ATP binding cassette subfamily G member 1
Tssr143638 17 31057704 to 31057713 9 + TSS region transcription start site region 143638
Tssr143639 17 31057719 to 31057734 15 + TSS region transcription start site region 143639
Tssr143640 17 31057740 to 31057749 9 + TSS region transcription start site region 143640
Tssr143641 17 31057768 to 31057778 10 + TSS region transcription start site region 143641
Gm25447 17 31059604 to 31059731 127 + rRNA gene predicted gene, 25447
Tssr143642 17 31067273 to 31067291 18 + TSS region transcription start site region 143642
Tssr143643 17 31067293 to 31067299 6 + TSS region transcription start site region 143643
Tssr143644 17 31067349 to 31067358 9 + TSS region transcription start site region 143644
Tssr143645 17 31069890 to 31069908 18 + TSS region transcription start site region 143645
Cpgi8941 17 31073306 to 31073683 377 CpG island CpG island 8941
Tssr147269 17 31074690 to 31074711 21 - TSS region transcription start site region 147269
Tssr143646 17 31098017 to 31098020 3 + TSS region transcription start site region 143646
Tssr143647 17 31104107 to 31104116 9 + TSS region transcription start site region 143647
Tssr143648 17 31106091 to 31106105 14 + TSS region transcription start site region 143648
Tssr143649 17 31108403 to 31108414 11 + TSS region transcription start site region 143649
Tssr143650 17 31111006 to 31111025 19 + TSS region transcription start site region 143650
Tssr143651 17 31114529 to 31114533 4 + TSS region transcription start site region 143651
Tssr143652 17 31115025 to 31115057 32 + TSS region transcription start site region 143652
Tssr143653 17 31115531 to 31115543 12 + TSS region transcription start site region 143653
Tff3 17 31125306 to 31129611 4305 - protein coding gene trefoil factor 3, intestinal
Tssr147270 17 31129602 to 31129619 17 - TSS region transcription start site region 147270
Tff2 17 31141062 to 31144282 3220 - protein coding gene trefoil factor 2 (spasmolytic protein 1)
Tssr5067 17 31143254 to 31143271 17 - TSS region transcription start site region 5067
Tssr147271 17 31144251 to 31144265 14 - TSS region transcription start site region 147271
Tssr147272 17 31144271 to 31144288 17 - TSS region transcription start site region 147272
Gm15318 17 31152752 to 31163052 10300 + antisense lncRNA gene predicted gene 15318
Tssr5068 17 31152792 to 31152829 37 + TSS region transcription start site region 5068
Tssr5069 17 31152864 to 31152875 11 + TSS region transcription start site region 5069
Tssr5070 17 31161394 to 31161398 4 + TSS region transcription start site region 5070
Tff1 17 31161396 to 31165053 3657 - protein coding gene trefoil factor 1
Tssr5071 17 31161431 to 31161436 5 - TSS region transcription start site region 5071
Tssr5072 17 31161478 to 31161484 6 - TSS region transcription start site region 5072
Tssr5073 17 31161513 to 31161525 12 - TSS region transcription start site region 5073
Tssr5074 17 31161536 to 31161543 7 - TSS region transcription start site region 5074
Tssr5075 17 31161536 to 31161567 31 + TSS region transcription start site region 5075
Tssr5076 17 31162684 to 31162693 9 - TSS region transcription start site region 5076
Tssr5077 17 31162759 to 31162782 23 - TSS region transcription start site region 5077
Tssr5078 17 31162795 to 31162811 16 - TSS region transcription start site region 5078
Tssr147273 17 31165045 to 31165053 8 - TSS region transcription start site region 147273
Tmprss3 17 31179272 to 31198975 19703 - protein coding gene transmembrane protease, serine 3
Tssr5079 17 31186221 to 31186258 37 - TSS region transcription start site region 5079
Tssr5080 17 31186620 to 31186656 36 - TSS region transcription start site region 5080
Tssr5081 17 31198906 to 31198912 6 - TSS region transcription start site region 5081
Tssr147274 17 31198924 to 31198954 30 - TSS region transcription start site region 147274
Tssr147275 17 31198958 to 31198976 18 - TSS region transcription start site region 147275
Tssr147276 17 31199008 to 31199012 4 - TSS region transcription start site region 147276
Ubash3a 17 31207873 to 31242202 34329 + protein coding gene ubiquitin associated and SH3 domain containing, A
Tssr143654 17 31208049 to 31208112 63 + TSS region transcription start site region 143654
Tssr147277 17 31208797 to 31208805 8 - TSS region transcription start site region 147277
Tssr147278 17 31208813 to 31208835 22 - TSS region transcription start site region 147278
Tssr143655 17 31212106 to 31212121 15 + TSS region transcription start site region 143655
Tssr143656 17 31247323 to 31247334 11 + TSS region transcription start site region 143656
Rsph1 17 31255019 to 31277356 22337 - protein coding gene radial spoke head 1 homolog (Chlamydomonas)
Gm30090 17 31258196 to 31259681 1485 + lncRNA gene predicted gene, 30090
Tssr147279 17 31260508 to 31260512 4 - TSS region transcription start site region 147279
Tssr147280 17 31265868 to 31265878 10 - TSS region transcription start site region 147280
Tssr147281 17 31268354 to 31268358 4 - TSS region transcription start site region 147281
Cpgi8942 17 31276927 to 31277545 618 CpG island CpG island 8942
Tssr147282 17 31277257 to 31277325 68 - TSS region transcription start site region 147282
Tssr147283 17 31277327 to 31277352 25 - TSS region transcription start site region 147283
Tssr5082 17 31277378 to 31277382 4 - TSS region transcription start site region 5082
Tssr147284 17 31277389 to 31277404 15 - TSS region transcription start site region 147284
Gm8437 17 31278503 to 31299821 21318 unclassified gene predicted gene 8437
Gm30139 17 31285484 to 31292441 6957 - lncRNA gene predicted gene, 30139
Slc37a1 17 31295483 to 31350696 55213 + protein coding gene solute carrier family 37 (glycerol-3-phosphate transporter), member 1
Cpgi8943 17 31295770 to 31296893 1123 CpG island CpG island 8943
Tssr5083 17 31295806 to 31295819 13 + TSS region transcription start site region 5083
Tssr143657 17 31296191 to 31296253 62 + TSS region transcription start site region 143657
Tssr147285 17 31296623 to 31296646 23 - TSS region transcription start site region 147285
Tssr147286 17 31296650 to 31296666 16 - TSS region transcription start site region 147286
Tssr143658 17 31296722 to 31296794 72 + TSS region transcription start site region 143658
Tssr143659 17 31296796 to 31296816 20 + TSS region transcription start site region 143659
Tssr143660 17 31296986 to 31296999 13 + TSS region transcription start site region 143660
Tssr143661 17 31319857 to 31319882 25 + TSS region transcription start site region 143661
D17Mit146.1 17 31320504 to 31320668 164 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 146.1
D17Mit146 17 31320646 to 31320751 105 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 146
Tssr143662 17 31322140 to 31322153 13 + TSS region transcription start site region 143662
Cpgi8944 17 31385959 to 31386777 818 CpG island CpG island 8944
Tssr143663 17 31386218 to 31386238 20 + TSS region transcription start site region 143663
Pde9a 17 31386234 to 31476310 90076 + protein coding gene phosphodiesterase 9A
Tssr143664 17 31386244 to 31386280 36 + TSS region transcription start site region 143664
Gm9902 17 31432999 to 31434831 1832 unclassified gene predicted gene 9902
Tssr143665 17 31433054 to 31433063 9 + TSS region transcription start site region 143665
Tssr143666 17 31433099 to 31433156 57 + TSS region transcription start site region 143666
Tssr143667 17 31442914 to 31442928 14 + TSS region transcription start site region 143667
Tssr143668 17 31442938 to 31442953 15 + TSS region transcription start site region 143668