Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:2999446-5242102

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49792 17 3042024 to 3042303 279 + pseudogene predicted gene, 49792
Gm10232 17 3044017 to 3044733 716 - pseudogene predicted pseudogene 10232
Gm16569 17 3053159 to 3054111 952 + pseudogene predicted gene 16569
Gm5479 17 3056583 to 3056994 411 + pseudogene predicted gene 5479
Gm25909 17 3057799 to 3057919 120 - snoRNA gene predicted gene, 25909
Pisd-ps2 17 3076578 to 3084183 7605 - pseudogene phosphatidylserine decarboxylase, pseudogene 2
Cpgi8542 17 3082757 to 3083021 264 CpG island CpG island 8542
Tssr146273 17 3082849 to 3082863 14 - TSS region transcription start site region 146273
1700024P12Rik 17 3083923 to 3084985 1062 unclassified gene RIKEN cDNA 1700024P12 gene
Cpgi8543 17 3083943 to 3084932 989 CpG island CpG island 8543
Tssr142346 17 3084222 to 3084251 29 + TSS region transcription start site region 142346
Gm41522 17 3091395 to 3096952 5557 - pseudogene predicted gene, 41522
Gm5679 17 3097018 to 3098165 1147 + pseudogene predicted gene 5679
Gm4829 17 3101143 to 3101736 593 - pseudogene predicted gene 4829
Gm21926 17 3103784 to 3104442 658 - pseudogene predicted gene, 21926
Cpgi8544 17 3114067 to 3115888 1821 CpG island CpG island 8544
Tssr146274 17 3114512 to 3114534 22 - TSS region transcription start site region 146274
Tssr146275 17 3114552 to 3114563 11 - TSS region transcription start site region 146275
Tssr146276 17 3114762 to 3114828 66 - TSS region transcription start site region 146276
Tssr146277 17 3114835 to 3114892 57 - TSS region transcription start site region 146277
Tssr142347 17 3114930 to 3114939 9 + TSS region transcription start site region 142347
Tssr142348 17 3114957 to 3114982 25 + TSS region transcription start site region 142348
Scaf8 17 3114972 to 3198859 83887 + protein coding gene SR-related CTD-associated factor 8
Tssr142349 17 3114988 to 3115002 14 + TSS region transcription start site region 142349
Tssr142350 17 3115004 to 3115013 9 + TSS region transcription start site region 142350
Tssr142351 17 3115120 to 3115134 14 + TSS region transcription start site region 142351
Tssr142352 17 3115210 to 3115268 58 + TSS region transcription start site region 142352
Tssr142353 17 3115279 to 3115291 12 + TSS region transcription start site region 142353
Tssr146278 17 3115707 to 3115720 13 - TSS region transcription start site region 146278
Tssr146279 17 3115748 to 3115768 20 - TSS region transcription start site region 146279
Gm49798 17 3124555 to 3124801 246 - pseudogene predicted gene, 49798
Gm46578 17 3130158 to 3130512 354 - pseudogene predicted gene, 46578
D17Brg3 17 3132310 to 3132498 188 DNA segment DNA segment, Chr 17, David E. Bergstrom 3
Tssr4980 17 3155805 to 3155810 5 + TSS region transcription start site region 4980
Gm6242 17 3155856 to 3156365 509 + pseudogene predicted gene 6242
Tssr146280 17 3156355 to 3156366 11 - TSS region transcription start site region 146280
Tssr146281 17 3157874 to 3157889 15 - TSS region transcription start site region 146281
Tssr142354 17 3167022 to 3167027 5 + TSS region transcription start site region 142354
Tssr142355 17 3188637 to 3188651 14 + TSS region transcription start site region 142355
Gm49797 17 3198110 to 3311120 113010 + lincRNA gene predicted gene, 49797
Tssr142356 17 3199601 to 3199605 4 + TSS region transcription start site region 142356
Tssr142357 17 3210506 to 3210510 4 + TSS region transcription start site region 142357
D17Brg6 17 3225374 to 3225610 236 DNA segment DNA segment, Chr 17, David E. Bergstrom 6
Tssr142358 17 3239846 to 3239850 4 + TSS region transcription start site region 142358
Gm34035 17 3270681 to 3283270 12589 - lincRNA gene predicted gene, 34035
Tssr146282 17 3283165 to 3283178 13 - TSS region transcription start site region 146282
Tssr146283 17 3283186 to 3283197 11 - TSS region transcription start site region 146283
Tssr146284 17 3283244 to 3283267 23 - TSS region transcription start site region 146284
Tssr146285 17 3283276 to 3283284 8 - TSS region transcription start site region 146285
Gm6475 17 3312250 to 3314185 1935 - pseudogene predicted gene 6475
Cpgi8545 17 3313922 to 3314826 904 CpG island CpG island 8545
Tssr146286 17 3314177 to 3314221 44 - TSS region transcription start site region 146286
Cpgi8546 17 3325199 to 3325520 321 CpG island CpG island 8546
D17Brg11 17 3325211 to 3325491 280 DNA segment DNA segment, Chr 17, David E. Bergstrom 11
Cpgi8547 17 3326057 to 3327344 1287 CpG island CpG island 8547
Tiam2 17 3326296 to 3519397 193101 + protein coding gene T cell lymphoma invasion and metastasis 2
Tssr142359 17 3326552 to 3326585 33 + TSS region transcription start site region 142359
Tssr142360 17 3326586 to 3326595 9 + TSS region transcription start site region 142360
Tssr142361 17 3326677 to 3326684 7 + TSS region transcription start site region 142361
Gm49221 17 3346711 to 3347067 356 - pseudogene predicted gene, 49221
D17Mit267 17 3354862 to 3355007 145 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-267
Tssr142362 17 3397189 to 3397204 15 + TSS region transcription start site region 142362
Tssr142363 17 3397220 to 3397242 22 + TSS region transcription start site region 142363
Tssr4981 17 3410941 to 3410944 3 + TSS region transcription start site region 4981
Cpgi8548 17 3414562 to 3414746 184 CpG island CpG island 8548
D17Brg18 17 3431185 to 3431485 300 DNA segment DNA segment, Chr 17, David E. Bergstrom 18
Tssr142364 17 3453215 to 3453226 11 + TSS region transcription start site region 142364
Tssr142365 17 3453229 to 3453244 15 + TSS region transcription start site region 142365
Tssr142366 17 3453255 to 3453276 21 + TSS region transcription start site region 142366
Tssr142367 17 3454238 to 3454253 15 + TSS region transcription start site region 142367
Gm7043 17 3461804 to 3462332 528 - pseudogene predicted gene 7043
Tssr146287 17 3462365 to 3462373 8 - TSS region transcription start site region 146287
Tssr142368 17 3463010 to 3463040 30 + TSS region transcription start site region 142368
D17Brg19 17 3478791 to 3479159 368 DNA segment DNA segment, Chr 17, David E. Bergstrom 19
Tssr142369 17 3482180 to 3482187 7 + TSS region transcription start site region 142369
Tssr142370 17 3482244 to 3482255 11 + TSS region transcription start site region 142370
Tssr142371 17 3482467 to 3482489 22 + TSS region transcription start site region 142371
Tfb1m 17 3519256 to 3557777 38521 - protein coding gene transcription factor B1, mitochondrial
Cldn20 17 3532554 to 3533213 659 + protein coding gene claudin 20
Cpgi8549 17 3557207 to 3557967 760 CpG island CpG island 8549
Tssr142372 17 3557452 to 3557462 10 + TSS region transcription start site region 142372
Tssr142373 17 3557521 to 3557578 57 + TSS region transcription start site region 142373
Tssr146288 17 3557718 to 3557733 15 - TSS region transcription start site region 146288
Tssr146289 17 3557742 to 3557775 33 - TSS region transcription start site region 146289
Tssr146290 17 3557785 to 3557797 12 - TSS region transcription start site region 146290
Tssr146291 17 3557813 to 3557824 11 - TSS region transcription start site region 146291
1700102H20Rik 17 3557824 to 3559862 2038 + lincRNA gene RIKEN cDNA 1700102H20 gene
Tssr4982 17 3557834 to 3557838 4 - TSS region transcription start site region 4982
Tssr142374 17 3557847 to 3557877 30 + TSS region transcription start site region 142374
Tssr142375 17 3558097 to 3558112 15 + TSS region transcription start site region 142375
Gm34155 17 3562349 to 3577325 14976 + lncRNA gene predicted gene, 34155
D17Mit268 17 3618921 to 3619065 144 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-268
Nox3 17 3635240 to 3696261 61021 - protein coding gene NADPH oxidase 3
D17Brg22 17 3644234 to 3644449 215 DNA segment DNA segment, Chr 17, David E. Bergstrom 22
D17Brg23 17 3657357 to 3657575 218 DNA segment DNA segment, Chr 17, David E. Bergstrom 23
Tssr146292 17 3663562 to 3663567 5 - TSS region transcription start site region 146292
Gm34208 17 3663658 to 3671660 8002 + lncRNA gene predicted gene, 34208
D17Brg119 17 3719719 to 3719902 183 DNA segment DNA segment, Chr 17, David E. Bergstrom 119
D17Brg120 17 3732913 to 3733073 160 DNA segment DNA segment, Chr 17, David E. Bergstrom 120
D17Brg29 17 3792598 to 3792802 204 DNA segment DNA segment, Chr 17, David E. Bergstrom 29
D17Brg30 17 3812010 to 3812221 211 DNA segment DNA segment, Chr 17, David E. Bergstrom 30
Cpgi8550 17 3878879 to 3879130 251 CpG island CpG island 8550
Vtbt18 17 3924615 to 3924747 132 QTL vertebral trabecular bone trait 18
Bhr3 17 3924615 to 48559063 44634448 QTL bronchial hyperresponsiveness 3
D17Mit164 17 3924615 to 3924747 132 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 164
Myaa1 17 3924615 to 3924747 132 QTL modifier of Yaa 1
l17J2 17 3924615 to 6096434 2171819 heritable phenotypic marker lethal, Chr 17, Jackson 2
l17J1 17 3924615 to 6096434 2171819 heritable phenotypic marker lethal, Chr 17, Jackson 1
Tssr146293 17 4030939 to 4030944 5 - TSS region transcription start site region 146293
4930470H14Rik 17 4044658 to 4082995 38337 - lincRNA gene RIKEN cDNA 4930470H14 gene
4930548J01Rik 17 4119446 to 4122102 2656 - lncRNA gene RIKEN cDNA 4930548J01 gene
Tssr146294 17 4122088 to 4122137 49 - TSS region transcription start site region 146294
D17Brg198 17 4158105 to 4158283 178 DNA segment DNA segment, Chr 17, David E. Bergstrom 198
D17Brg199 17 4174576 to 4174753 177 DNA segment DNA segment, Chr 17, David E. Bergstrom 199
Gm41516 17 4186468 to 4192986 6518 - lncRNA gene predicted gene, 41516
Tssr4983 17 4196914 to 4196933 19 - TSS region transcription start site region 4983
D17Brg125 17 4281244 to 4281434 190 DNA segment DNA segment, Chr 17, David E. Bergstrom 125
Tssr146295 17 4281603 to 4281612 9 - TSS region transcription start site region 146295
D17Brg140 17 4415582 to 4415769 187 DNA segment DNA segment, Chr 17, David E. Bergstrom 140
D17Brg152 17 4518444 to 4518633 189 DNA segment DNA segment, Chr 17, David E. Bergstrom 152
D17Brg153 17 4527153 to 4527324 171 DNA segment DNA segment, Chr 17, David E. Bergstrom 153
Gm34259 17 4612379 to 4633520 21141 + lncRNA gene predicted gene, 34259
4930517M08Rik 17 4634978 to 4637471 2493 + lincRNA gene RIKEN cDNA 4930517M08 gene
Gm23186 17 4678020 to 4678126 106 + snRNA gene predicted gene, 23186
D17Mit223 17 4780494 to 4780618 124 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 223
Gm49780 17 4792646 to 4792959 313 - pseudogene predicted gene, 49780
Gm34371 17 4794550 to 4797430 2880 + lncRNA gene predicted gene, 34371
Tssr142376 17 4794686 to 4794698 12 + TSS region transcription start site region 142376
Tssr142377 17 4794704 to 4794727 23 + TSS region transcription start site region 142377
D17Mit19 17 4804477 to 4804658 181 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 19
Tfv1 17 4804477 to 65330362 60525885 QTL total food volume 1
4930579D07Rik 17 4851698 to 4892987 41289 - lincRNA gene RIKEN cDNA 4930579D07 gene
Cpgi8551 17 4854106 to 4854336 230 CpG island CpG island 8551
Tssr142378 17 4880579 to 4880581 2 + TSS region transcription start site region 142378
Gm4828 17 4880626 to 4881115 489 + pseudogene predicted gene 4828
Cpgi8552 17 4907893 to 4908850 957 CpG island CpG island 8552
Gm34507 17 4908010 to 4914351 6341 + protein coding gene predicted gene, 34507
Tssr146296 17 4908539 to 4908571 32 - TSS region transcription start site region 146296
Gm41517 17 4945152 to 4946814 1662 - lincRNA gene predicted gene, 41517
Gm34625 17 4954198 to 4960852 6654 + lncRNA gene predicted gene, 34625
Cpgi8553 17 4993726 to 4996994 3268 CpG island CpG island 8553
Tssr142379 17 4994286 to 4994373 87 + TSS region transcription start site region 142379
Arid1b 17 4994332 to 5347656 353324 + protein coding gene AT rich interactive domain 1B (SWI-like)
Tssr142380 17 4994491 to 4994531 40 + TSS region transcription start site region 142380
Tssr4984 17 4994612 to 4994658 46 + TSS region transcription start site region 4984
Tssr142381 17 4994697 to 4994730 33 + TSS region transcription start site region 142381
Tssr142382 17 4994904 to 4994953 49 + TSS region transcription start site region 142382
Tssr142383 17 4995664 to 4995693 29 + TSS region transcription start site region 142383
Tssr142384 17 4995902 to 4995959 57 + TSS region transcription start site region 142384
Tssr142385 17 4995982 to 4995989 7 + TSS region transcription start site region 142385
Tssr142386 17 5000550 to 5000553 3 + TSS region transcription start site region 142386
Tssr142387 17 5012808 to 5012832 24 + TSS region transcription start site region 142387
Tssr142388 17 5012841 to 5012852 11 + TSS region transcription start site region 142388
Tssr142389 17 5057966 to 5057969 3 + TSS region transcription start site region 142389
Tssr146297 17 5058488 to 5058503 15 - TSS region transcription start site region 146297
D17Jcs97 17 5069733 to 5069942 209 DNA segment DNA segment, Chr 17, John C. Schimenti 97
Tssr142390 17 5072989 to 5072992 3 + TSS region transcription start site region 142390
Tssr142391 17 5089896 to 5089901 5 + TSS region transcription start site region 142391
Tssr142392 17 5090081 to 5090122 41 + TSS region transcription start site region 142392
Cpgi8554 17 5091498 to 5091697 199 CpG island CpG island 8554
Tssr142393 17 5103243 to 5103248 5 + TSS region transcription start site region 142393
Gm15599 17 5110766 to 5112110 1344 - pseudogene predicted gene 15599
Tssr142394 17 5134934 to 5134938 4 + TSS region transcription start site region 142394
Tssr142395 17 5152647 to 5152658 11 + TSS region transcription start site region 142395
Tssr142396 17 5160946 to 5160950 4 + TSS region transcription start site region 142396
Cpgi8555 17 5189663 to 5190103 440 CpG island CpG island 8555
Tssr142397 17 5189899 to 5189917 18 + TSS region transcription start site region 142397
Tssr142398 17 5195701 to 5195737 36 + TSS region transcription start site region 142398
Gm34854 17 5196277 to 5217166 20889 - lncRNA gene predicted gene, 34854
Tssr146298 17 5217279 to 5217309 30 - TSS region transcription start site region 146298
Tssr142399 17 5227897 to 5227898 1 + TSS region transcription start site region 142399
Idd23 17 26182159 to 3924615 -22257544 QTL insulin dependent diabetes susceptibility 23
Lmr7 17 27496965 to 4804477 -22692488 QTL leishmaniasis resistance 7
Mnic1 17 45359340 to 4804477 -40554863 QTL macronutrient intake, carbohydrate 1
Alan1 17 46158776 to 4804477 -41354299 QTL alloantigen response 1
Kdnw3 17 47574740 to 4804477 -42770263 QTL kidney weight 3