Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:29725039-30490823

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq12 17 26609807 to 30445981 3836174 QTL conditioned fear QTL 12
Cpgi8926 17 29746887 to 29747087 200 CpG island CpG island 8926
Cpgi8927 17 29759961 to 29760132 171 CpG island CpG island 8927
Tssr143594 17 29769347 to 29769357 10 + TSS region transcription start site region 143594
Cpgi8928 17 29773354 to 29773634 280 CpG island CpG island 8928
Tssr143595 17 29774585 to 29774590 5 + TSS region transcription start site region 143595
Gm50016 17 29813629 to 29819387 5758 - lincRNA gene predicted gene, 50016
Mdga1 17 29827956 to 29888431 60475 - protein coding gene MAM domain containing glycosylphosphatidylinositol anchor 1
Cpgi8929 17 29841827 to 29843089 1262 CpG island CpG island 8929
Tssr5061 17 29842176 to 29842177 1 + TSS region transcription start site region 5061
Tssr147237 17 29842314 to 29842325 11 - TSS region transcription start site region 147237
Tssr147238 17 29842342 to 29842355 13 - TSS region transcription start site region 147238
Tssr143596 17 29846530 to 29846535 5 + TSS region transcription start site region 143596
Tssr143597 17 29846547 to 29846558 11 + TSS region transcription start site region 143597
Tssr143598 17 29848220 to 29848223 3 + TSS region transcription start site region 143598
Cpgi8930 17 29849150 to 29849695 545 CpG island CpG island 8930
Cpgi8931 17 29852391 to 29852811 420 CpG island CpG island 8931
Tssr147239 17 29852749 to 29852762 13 - TSS region transcription start site region 147239
Cpgi8932 17 29886488 to 29890243 3755 CpG island CpG island 8932
Tssr5062 17 29886817 to 29886828 11 + TSS region transcription start site region 5062
Tssr5063 17 29886909 to 29886956 47 + TSS region transcription start site region 5063
Tssr147240 17 29888570 to 29888593 23 - TSS region transcription start site region 147240
Gm16758 17 29888903 to 29892214 3311 + lncRNA gene predicted gene, 16758
Gm41559 17 29894349 to 29897071 2722 + lncRNA gene predicted gene, 41559
Cpgi8933 17 29931246 to 29931523 277 CpG island CpG island 8933
Tssr143599 17 29948054 to 29948055 1 + TSS region transcription start site region 143599
Gm50017 17 29979320 to 29982233 2913 + lincRNA gene predicted gene, 50017
Tssr147241 17 29981727 to 29981748 21 - TSS region transcription start site region 147241
Gm50018 17 29983680 to 29983988 308 - pseudogene predicted gene, 50018
Gm22327 17 29984034 to 29984141 107 - snoRNA gene predicted gene, 22327
Gm50019 17 29997956 to 30004691 6735 - bidirectional promoter lncRNA gene predicted gene, 50019
Cpgi8934 17 30004100 to 30005783 1683 CpG island CpG island 8934
Tssr143600 17 30004356 to 30004393 37 + TSS region transcription start site region 143600
Tssr143601 17 30004480 to 30004519 39 + TSS region transcription start site region 143601
Tssr147242 17 30004620 to 30004640 20 - TSS region transcription start site region 147242
Tssr143602 17 30004778 to 30004846 68 + TSS region transcription start site region 143602
Tssr143603 17 30004853 to 30004876 23 + TSS region transcription start site region 143603
Tssr143604 17 30005029 to 30005098 69 + TSS region transcription start site region 143604
Zfand3 17 30005039 to 30210020 204981 + protein coding gene zinc finger, AN1-type domain 3
Tssr147243 17 30005635 to 30005640 5 - TSS region transcription start site region 147243
Tssr143605 17 30005779 to 30005793 14 + TSS region transcription start site region 143605
Tssr143606 17 30005887 to 30005905 18 + TSS region transcription start site region 143606
Tssr143607 17 30007655 to 30007664 9 + TSS region transcription start site region 143607
Tssr143608 17 30011168 to 30011176 8 + TSS region transcription start site region 143608
D17Ertd165e 17 30024657 to 30024897 240 DNA segment DNA segment, Chr 17, ERATO Doi 165, expressed
Tssr143609 17 30060342 to 30060359 17 + TSS region transcription start site region 143609
Tssr143610 17 30077506 to 30077516 10 + TSS region transcription start site region 143610
D17Jcs18 17 30080769 to 30081015 246 DNA segment DNA segment, Chr 17, John C. Schimenti 18
Tssr143611 17 30088785 to 30088795 10 + TSS region transcription start site region 143611
Tssr143612 17 30135173 to 30135193 20 + TSS region transcription start site region 143612
Tssr143613 17 30135194 to 30135210 16 + TSS region transcription start site region 143613
Tssr147244 17 30135365 to 30135396 31 - TSS region transcription start site region 147244
Tssr143614 17 30155961 to 30155968 7 + TSS region transcription start site region 143614
C130068B02Rik 17 30163331 to 30164791 1460 unclassified gene RIKEN cDNA C130068B02 gene
Tssr143615 17 30169838 to 30169843 5 + TSS region transcription start site region 143615
Tuba-rs1 17 30177433 to 30178789 1356 + pseudogene tubulin alpha, related sequence 1
D17Ertd277e 17 30199218 to 30199430 212 DNA segment DNA segment, Chr 17, ERATO Doi 277, expressed
Btbd9 17 30215524 to 30576287 360763 - protein coding gene BTB (POZ) domain containing 9
Tssr147245 17 30229161 to 30229170 9 - TSS region transcription start site region 147245
Gm25049 17 30311079 to 30311151 72 + snRNA gene predicted gene, 25049
D17Mit60 17 30356122 to 30356232 110 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 60
Tssr147246 17 30389368 to 30389370 2 - TSS region transcription start site region 147246
Gm6402 17 30394825 to 30396180 1355 - pseudogene predicted pseudogene 6402
Tssr147247 17 30396055 to 30396060 5 - TSS region transcription start site region 147247
Tssr147248 17 30398258 to 30398263 5 - TSS region transcription start site region 147248
Tssr5064 17 30414717 to 30414729 12 - TSS region transcription start site region 5064
Tssr147249 17 30415844 to 30415848 4 - TSS region transcription start site region 147249
Tssr147250 17 30424372 to 30424375 3 - TSS region transcription start site region 147250
Gm9874 17 30484661 to 30486124 1463 + unclassified gene predicted gene 9874