Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:29619585-29929590

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm28052 17 29549799 to 29682012 132213 + unclassified non-coding RNA gene predicted gene, 28052
Rnf8 17 29614789 to 29641664 26875 + protein coding gene ring finger protein 8
Gm28043 17 29614876 to 29703359 88483 + protein coding gene predicted gene, 28043
Tssr143585 17 29637005 to 29637047 42 + TSS region transcription start site region 143585
Gm20161 17 29652228 to 29658336 6108 - lncRNA gene predicted gene, 20161
Tssr147233 17 29658304 to 29658334 30 - TSS region transcription start site region 147233
Tssr147234 17 29658337 to 29658352 15 - TSS region transcription start site region 147234
Cpgi8924 17 29660400 to 29661312 912 CpG island CpG island 8924
Cmtr1 17 29660595 to 29705979 45384 + protein coding gene cap methyltransferase 1
Tssr143586 17 29660614 to 29660706 92 + TSS region transcription start site region 143586
Tssr143587 17 29660710 to 29660721 11 + TSS region transcription start site region 143587
Tssr143588 17 29662246 to 29662250 4 + TSS region transcription start site region 143588
Tssr143589 17 29679247 to 29679270 23 + TSS region transcription start site region 143589
Tssr143590 17 29680527 to 29680538 11 + TSS region transcription start site region 143590
Tssr143591 17 29681169 to 29681181 12 + TSS region transcription start site region 143591
Tssr147235 17 29691249 to 29691250 1 - TSS region transcription start site region 147235
Tssr143592 17 29691258 to 29691279 21 + TSS region transcription start site region 143592
Ccdc167 17 29695977 to 29717017 21040 - protein coding gene coiled-coil domain containing 167
Cpgi8925 17 29716698 to 29717206 508 CpG island CpG island 8925
Tssr147236 17 29716969 to 29717028 59 - TSS region transcription start site region 147236
Tssr143593 17 29717115 to 29717147 32 + TSS region transcription start site region 143593
1810014P07Rik 17 29718784 to 29719152 368 unclassified gene RIKEN cDNA 1810014P07 gene
Cpgi8926 17 29746887 to 29747087 200 CpG island CpG island 8926
Cpgi8927 17 29759961 to 29760132 171 CpG island CpG island 8927
Tssr143594 17 29769347 to 29769357 10 + TSS region transcription start site region 143594
Cpgi8928 17 29773354 to 29773634 280 CpG island CpG island 8928
Tssr143595 17 29774585 to 29774590 5 + TSS region transcription start site region 143595
Gm50016 17 29813629 to 29819387 5758 - lincRNA gene predicted gene, 50016
Mdga1 17 29827956 to 29888431 60475 - protein coding gene MAM domain containing glycosylphosphatidylinositol anchor 1
Cpgi8929 17 29841827 to 29843089 1262 CpG island CpG island 8929
Tssr5061 17 29842176 to 29842177 1 + TSS region transcription start site region 5061
Tssr147237 17 29842314 to 29842325 11 - TSS region transcription start site region 147237
Tssr147238 17 29842342 to 29842355 13 - TSS region transcription start site region 147238
Tssr143596 17 29846530 to 29846535 5 + TSS region transcription start site region 143596
Tssr143597 17 29846547 to 29846558 11 + TSS region transcription start site region 143597
Tssr143598 17 29848220 to 29848223 3 + TSS region transcription start site region 143598
Cpgi8930 17 29849150 to 29849695 545 CpG island CpG island 8930
Cpgi8931 17 29852391 to 29852811 420 CpG island CpG island 8931
Tssr147239 17 29852749 to 29852762 13 - TSS region transcription start site region 147239
Cpgi8932 17 29886488 to 29890243 3755 CpG island CpG island 8932
Tssr5062 17 29886817 to 29886828 11 + TSS region transcription start site region 5062
Tssr5063 17 29886909 to 29886956 47 + TSS region transcription start site region 5063
Tssr147240 17 29888570 to 29888593 23 - TSS region transcription start site region 147240
Gm16758 17 29888903 to 29892214 3311 + lncRNA gene predicted gene, 16758
Gm41559 17 29894349 to 29897071 2722 + lncRNA gene predicted gene, 41559