Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:29600961-30710968

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq12 17 26609807 to 30445981 3836174 QTL conditioned fear QTL 12
Tbc1d22b 17 29549788 to 29606894 57106 + protein coding gene TBC1 domain family, member 22B
Gm28052 17 29549799 to 29682012 132213 + unclassified non-coding RNA gene predicted gene, 28052
2010106G04Rik 17 29614467 to 29614768 301 unclassified gene RIKEN cDNA 2010106G04 gene
Cpgi8923 17 29614519 to 29615621 1102 CpG island CpG island 8923
Tssr143581 17 29614786 to 29614797 11 + TSS region transcription start site region 143581
Rnf8 17 29614789 to 29641664 26875 + protein coding gene ring finger protein 8
Tssr143582 17 29614800 to 29614844 44 + TSS region transcription start site region 143582
Tssr143583 17 29614848 to 29614928 80 + TSS region transcription start site region 143583
Gm28043 17 29614876 to 29703359 88483 + protein coding gene predicted gene, 28043
Tssr143584 17 29614947 to 29614958 11 + TSS region transcription start site region 143584
4930563A19Rik 17 29615282 to 29615547 265 unclassified gene RIKEN cDNA 4930563A19 gene
Tssr143585 17 29637005 to 29637047 42 + TSS region transcription start site region 143585
Gm20161 17 29652228 to 29658336 6108 - lncRNA gene predicted gene, 20161
Tssr147233 17 29658304 to 29658334 30 - TSS region transcription start site region 147233
Tssr147234 17 29658337 to 29658352 15 - TSS region transcription start site region 147234
Cpgi8924 17 29660400 to 29661312 912 CpG island CpG island 8924
Cmtr1 17 29660595 to 29705979 45384 + protein coding gene cap methyltransferase 1
Tssr143586 17 29660614 to 29660706 92 + TSS region transcription start site region 143586
Tssr143587 17 29660710 to 29660721 11 + TSS region transcription start site region 143587
Tssr143588 17 29662246 to 29662250 4 + TSS region transcription start site region 143588
Tssr143589 17 29679247 to 29679270 23 + TSS region transcription start site region 143589
Tssr143590 17 29680527 to 29680538 11 + TSS region transcription start site region 143590
Tssr143591 17 29681169 to 29681181 12 + TSS region transcription start site region 143591
Tssr147235 17 29691249 to 29691250 1 - TSS region transcription start site region 147235
Tssr143592 17 29691258 to 29691279 21 + TSS region transcription start site region 143592
Ccdc167 17 29695977 to 29717017 21040 - protein coding gene coiled-coil domain containing 167
Cpgi8925 17 29716698 to 29717206 508 CpG island CpG island 8925
Tssr147236 17 29716969 to 29717028 59 - TSS region transcription start site region 147236
Tssr143593 17 29717115 to 29717147 32 + TSS region transcription start site region 143593
1810014P07Rik 17 29718784 to 29719152 368 unclassified gene RIKEN cDNA 1810014P07 gene
Cpgi8926 17 29746887 to 29747087 200 CpG island CpG island 8926
Cpgi8927 17 29759961 to 29760132 171 CpG island CpG island 8927
Tssr143594 17 29769347 to 29769357 10 + TSS region transcription start site region 143594
Cpgi8928 17 29773354 to 29773634 280 CpG island CpG island 8928
Tssr143595 17 29774585 to 29774590 5 + TSS region transcription start site region 143595
Gm50016 17 29813629 to 29819387 5758 - lincRNA gene predicted gene, 50016
Mdga1 17 29827956 to 29888431 60475 - protein coding gene MAM domain containing glycosylphosphatidylinositol anchor 1
Cpgi8929 17 29841827 to 29843089 1262 CpG island CpG island 8929
Tssr5061 17 29842176 to 29842177 1 + TSS region transcription start site region 5061
Tssr147237 17 29842314 to 29842325 11 - TSS region transcription start site region 147237
Tssr147238 17 29842342 to 29842355 13 - TSS region transcription start site region 147238
Tssr143596 17 29846530 to 29846535 5 + TSS region transcription start site region 143596
Tssr143597 17 29846547 to 29846558 11 + TSS region transcription start site region 143597
Tssr143598 17 29848220 to 29848223 3 + TSS region transcription start site region 143598
Cpgi8930 17 29849150 to 29849695 545 CpG island CpG island 8930
Cpgi8931 17 29852391 to 29852811 420 CpG island CpG island 8931
Tssr147239 17 29852749 to 29852762 13 - TSS region transcription start site region 147239
Cpgi8932 17 29886488 to 29890243 3755 CpG island CpG island 8932
Tssr5062 17 29886817 to 29886828 11 + TSS region transcription start site region 5062
Tssr5063 17 29886909 to 29886956 47 + TSS region transcription start site region 5063
Tssr147240 17 29888570 to 29888593 23 - TSS region transcription start site region 147240
Gm16758 17 29888903 to 29892214 3311 + lncRNA gene predicted gene, 16758
Gm41559 17 29894349 to 29897071 2722 + lncRNA gene predicted gene, 41559
Cpgi8933 17 29931246 to 29931523 277 CpG island CpG island 8933
Tssr143599 17 29948054 to 29948055 1 + TSS region transcription start site region 143599
Gm50017 17 29979320 to 29982233 2913 + lincRNA gene predicted gene, 50017
Tssr147241 17 29981727 to 29981748 21 - TSS region transcription start site region 147241
Gm50018 17 29983680 to 29983988 308 - pseudogene predicted gene, 50018
Gm22327 17 29984034 to 29984141 107 - snoRNA gene predicted gene, 22327
Gm50019 17 29997956 to 30004691 6735 - bidirectional promoter lncRNA gene predicted gene, 50019
Cpgi8934 17 30004100 to 30005783 1683 CpG island CpG island 8934
Tssr143600 17 30004356 to 30004393 37 + TSS region transcription start site region 143600
Tssr143601 17 30004480 to 30004519 39 + TSS region transcription start site region 143601
Tssr147242 17 30004620 to 30004640 20 - TSS region transcription start site region 147242
Tssr143602 17 30004778 to 30004846 68 + TSS region transcription start site region 143602
Tssr143603 17 30004853 to 30004876 23 + TSS region transcription start site region 143603
Tssr143604 17 30005029 to 30005098 69 + TSS region transcription start site region 143604
Zfand3 17 30005039 to 30210020 204981 + protein coding gene zinc finger, AN1-type domain 3
Tssr147243 17 30005635 to 30005640 5 - TSS region transcription start site region 147243
Tssr143605 17 30005779 to 30005793 14 + TSS region transcription start site region 143605
Tssr143606 17 30005887 to 30005905 18 + TSS region transcription start site region 143606
Tssr143607 17 30007655 to 30007664 9 + TSS region transcription start site region 143607
Tssr143608 17 30011168 to 30011176 8 + TSS region transcription start site region 143608
D17Ertd165e 17 30024657 to 30024897 240 DNA segment DNA segment, Chr 17, ERATO Doi 165, expressed
Tssr143609 17 30060342 to 30060359 17 + TSS region transcription start site region 143609
Tssr143610 17 30077506 to 30077516 10 + TSS region transcription start site region 143610
D17Jcs18 17 30080769 to 30081015 246 DNA segment DNA segment, Chr 17, John C. Schimenti 18
Tssr143611 17 30088785 to 30088795 10 + TSS region transcription start site region 143611
Tssr143612 17 30135173 to 30135193 20 + TSS region transcription start site region 143612
Tssr143613 17 30135194 to 30135210 16 + TSS region transcription start site region 143613
Tssr147244 17 30135365 to 30135396 31 - TSS region transcription start site region 147244
Tssr143614 17 30155961 to 30155968 7 + TSS region transcription start site region 143614
C130068B02Rik 17 30163331 to 30164791 1460 unclassified gene RIKEN cDNA C130068B02 gene
Tssr143615 17 30169838 to 30169843 5 + TSS region transcription start site region 143615
Tuba-rs1 17 30177433 to 30178789 1356 + pseudogene tubulin alpha, related sequence 1
D17Ertd277e 17 30199218 to 30199430 212 DNA segment DNA segment, Chr 17, ERATO Doi 277, expressed
Btbd9 17 30215524 to 30576287 360763 - protein coding gene BTB (POZ) domain containing 9
Tssr147245 17 30229161 to 30229170 9 - TSS region transcription start site region 147245
Gm25049 17 30311079 to 30311151 72 + snRNA gene predicted gene, 25049
D17Mit60 17 30356122 to 30356232 110 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 60
Tssr147246 17 30389368 to 30389370 2 - TSS region transcription start site region 147246
Gm6402 17 30394825 to 30396180 1355 - pseudogene predicted pseudogene 6402
Tssr147247 17 30396055 to 30396060 5 - TSS region transcription start site region 147247
Tssr147248 17 30398258 to 30398263 5 - TSS region transcription start site region 147248
Tssr5064 17 30414717 to 30414729 12 - TSS region transcription start site region 5064
Tssr147249 17 30415844 to 30415848 4 - TSS region transcription start site region 147249
Tssr147250 17 30424372 to 30424375 3 - TSS region transcription start site region 147250
Gm9874 17 30484661 to 30486124 1463 + unclassified gene predicted gene 9874
Tssr147251 17 30538102 to 30538107 5 - TSS region transcription start site region 147251
Tssr147252 17 30563815 to 30563819 4 - TSS region transcription start site region 147252
Tssr147253 17 30571131 to 30571154 23 - TSS region transcription start site region 147253
Tssr147254 17 30571808 to 30571855 47 - TSS region transcription start site region 147254
Cpgi8935 17 30575541 to 30576905 1364 CpG island CpG island 8935
Tssr147255 17 30576163 to 30576240 77 - TSS region transcription start site region 147255
Tssr147256 17 30576241 to 30576312 71 - TSS region transcription start site region 147256
0710001D07Rik 17 30576299 to 30577431 1132 unclassified gene RIKEN cDNA 0710001D07 gene
Tssr143616 17 30576322 to 30576366 44 + TSS region transcription start site region 143616
Tssr147257 17 30576401 to 30576423 22 - TSS region transcription start site region 147257
Tssr147258 17 30576441 to 30576506 65 - TSS region transcription start site region 147258
Tssr143617 17 30576531 to 30576559 28 + TSS region transcription start site region 143617
Tssr143618 17 30576565 to 30576603 38 + TSS region transcription start site region 143618
Glo1 17 30592866 to 30612659 19793 - protein coding gene glyoxalase 1
Tssr147259 17 30593534 to 30593539 5 - TSS region transcription start site region 147259
Tssr147260 17 30597874 to 30597885 11 - TSS region transcription start site region 147260
Tssr147261 17 30597887 to 30597901 14 - TSS region transcription start site region 147261
Tssr147262 17 30602302 to 30602343 41 - TSS region transcription start site region 147262
Gm8373 17 30602591 to 30603710 1119 + pseudogene predicted gene 8373
Tssr143619 17 30603194 to 30603204 10 + TSS region transcription start site region 143619
Tssr147263 17 30604171 to 30604182 11 - TSS region transcription start site region 147263
Tssr147264 17 30606627 to 30606655 28 - TSS region transcription start site region 147264
Cpgi8936 17 30612178 to 30612789 611 CpG island CpG island 8936
Tssr147265 17 30612558 to 30612577 19 - TSS region transcription start site region 147265
Tssr147266 17 30612613 to 30612663 50 - TSS region transcription start site region 147266
1700097N02Rik 17 30622441 to 30626905 4464 - antisense lncRNA gene RIKEN cDNA 1700097N02 gene
Dnah8 17 30626936 to 30875762 248826 + protein coding gene dynein, axonemal, heavy chain 8
Tssr143620 17 30635503 to 30635548 45 + TSS region transcription start site region 143620
D17Mit61 17 30636084 to 30636245 161 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 61
Tssr143621 17 30651648 to 30651670 22 + TSS region transcription start site region 143621
Tssr143622 17 30651679 to 30651701 22 + TSS region transcription start site region 143622
Tssr143623 17 30678568 to 30678573 5 + TSS region transcription start site region 143623
Tssr143624 17 30684821 to 30684826 5 + TSS region transcription start site region 143624