Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:29463054-30433055

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hst4 17 26286363 to 29495465 3209102 heritable phenotypic marker hybrid sterility 4
Gm36199 17 29434727 to 29466079 31352 + lncRNA gene predicted gene, 36199
Gm26885 17 29447040 to 29467780 20740 - lincRNA gene predicted gene, 26885
Tssr147222 17 29464125 to 29464161 36 - TSS region transcription start site region 147222
Tssr143548 17 29464465 to 29464471 6 + TSS region transcription start site region 143548
Tssr143549 17 29465047 to 29465057 10 + TSS region transcription start site region 143549
Tssr147223 17 29465483 to 29465493 10 - TSS region transcription start site region 147223
Tssr143550 17 29467808 to 29467824 16 + TSS region transcription start site region 143550
Tssr147224 17 29467924 to 29467947 23 - TSS region transcription start site region 147224
Tssr143551 17 29472998 to 29473032 34 + TSS region transcription start site region 143551
Gm41558 17 29483527 to 29487346 3819 + lncRNA gene predicted gene, 41558
Tssr143552 17 29487445 to 29487456 11 + TSS region transcription start site region 143552
Tssr147225 17 29489073 to 29489085 12 - TSS region transcription start site region 147225
Tssr143553 17 29489230 to 29489237 7 + TSS region transcription start site region 143553
Tssr143554 17 29489338 to 29489348 10 + TSS region transcription start site region 143554
Tssr143555 17 29489679 to 29489692 13 + TSS region transcription start site region 143555
Cpgi8920 17 29489722 to 29492243 2521 CpG island CpG island 8920
Tssr143556 17 29489800 to 29489817 17 + TSS region transcription start site region 143556
Tssr147226 17 29490284 to 29490310 26 - TSS region transcription start site region 147226
Tssr143557 17 29490468 to 29490475 7 + TSS region transcription start site region 143557
Tssr143558 17 29490606 to 29490616 10 + TSS region transcription start site region 143558
Tssr143559 17 29490637 to 29490655 18 + TSS region transcription start site region 143559
Tssr143560 17 29490688 to 29490700 12 + TSS region transcription start site region 143560
Tssr143561 17 29490752 to 29490767 15 + TSS region transcription start site region 143561
Tssr143562 17 29490775 to 29490799 24 + TSS region transcription start site region 143562
Tssr143563 17 29490823 to 29490839 16 + TSS region transcription start site region 143563
Tssr143564 17 29490846 to 29490862 16 + TSS region transcription start site region 143564
Tssr143565 17 29490904 to 29490915 11 + TSS region transcription start site region 143565
Pim1 17 29491045 to 29495465 4420 + protein coding gene proviral integration site 1
Hst6 17 29491045 to 31681724 2190679 heritable phenotypic marker hybrid sterility 6
Tssr143566 17 29491343 to 29491357 14 + TSS region transcription start site region 143566
Tssr143567 17 29491642 to 29491673 31 + TSS region transcription start site region 143567
Tssr143568 17 29491725 to 29491738 13 + TSS region transcription start site region 143568
Tssr143569 17 29491787 to 29491798 11 + TSS region transcription start site region 143569
Tssr143570 17 29491800 to 29491805 5 + TSS region transcription start site region 143570
D17Mit23 17 29492190 to 29492323 133 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 23
Pas19 17 29492190 to 34535463 5043273 QTL pulmonary adenoma susceptibility 19
Tssr147227 17 29492342 to 29492376 34 - TSS region transcription start site region 147227
Tssr147228 17 29492840 to 29492859 19 - TSS region transcription start site region 147228
Tssr143571 17 29492997 to 29493009 12 + TSS region transcription start site region 143571
Tssr143572 17 29493037 to 29493105 68 + TSS region transcription start site region 143572
Tssr143573 17 29493114 to 29493128 14 + TSS region transcription start site region 143573
Tssr143574 17 29493132 to 29493143 11 + TSS region transcription start site region 143574
Tssr143575 17 29493169 to 29493183 14 + TSS region transcription start site region 143575
Tssr143576 17 29494500 to 29494523 23 + TSS region transcription start site region 143576
Tssr143577 17 29494627 to 29494639 12 + TSS region transcription start site region 143577
Tssr143578 17 29494916 to 29494942 26 + TSS region transcription start site region 143578
Tssr143579 17 29495635 to 29495657 22 + TSS region transcription start site region 143579
Gm17657 17 29518642 to 29549638 30996 - protein coding gene predicted gene, 17657
Cpgi8921 17 29519283 to 29519692 409 CpG island CpG island 8921
Tssr147229 17 29519823 to 29519853 30 - TSS region transcription start site region 147229
Tmem217 17 29526007 to 29552385 26378 - protein coding gene transmembrane protein 217
Tssr147230 17 29549588 to 29549598 10 - TSS region transcription start site region 147230
Tssr147231 17 29549631 to 29549643 12 - TSS region transcription start site region 147231
Cpgi8922 17 29549639 to 29550263 624 CpG island CpG island 8922
Tssr143580 17 29549783 to 29549798 15 + TSS region transcription start site region 143580
Tbc1d22b 17 29549788 to 29606894 57106 + protein coding gene TBC1 domain family, member 22B
Gm28052 17 29549799 to 29682012 132213 + unclassified non-coding RNA gene predicted gene, 28052
Tbc1d22bos 17 29578816 to 29596305 17489 - antisense lncRNA gene TBC1 domain family, member 22B, opposite strand
Tssr147232 17 29579429 to 29579451 22 - TSS region transcription start site region 147232
Mir7667 17 29595538 to 29595600 62 + miRNA gene microRNA 7667
2010106G04Rik 17 29614467 to 29614768 301 unclassified gene RIKEN cDNA 2010106G04 gene
Cpgi8923 17 29614519 to 29615621 1102 CpG island CpG island 8923
Tssr143581 17 29614786 to 29614797 11 + TSS region transcription start site region 143581
Rnf8 17 29614789 to 29641664 26875 + protein coding gene ring finger protein 8
Tssr143582 17 29614800 to 29614844 44 + TSS region transcription start site region 143582
Tssr143583 17 29614848 to 29614928 80 + TSS region transcription start site region 143583
Gm28043 17 29614876 to 29703359 88483 + protein coding gene predicted gene, 28043
Tssr143584 17 29614947 to 29614958 11 + TSS region transcription start site region 143584
4930563A19Rik 17 29615282 to 29615547 265 unclassified gene RIKEN cDNA 4930563A19 gene
Tssr143585 17 29637005 to 29637047 42 + TSS region transcription start site region 143585
Gm20161 17 29652228 to 29658336 6108 - lncRNA gene predicted gene, 20161
Tssr147233 17 29658304 to 29658334 30 - TSS region transcription start site region 147233
Tssr147234 17 29658337 to 29658352 15 - TSS region transcription start site region 147234
Cpgi8924 17 29660400 to 29661312 912 CpG island CpG island 8924
Cmtr1 17 29660595 to 29705979 45384 + protein coding gene cap methyltransferase 1
Tssr143586 17 29660614 to 29660706 92 + TSS region transcription start site region 143586
Tssr143587 17 29660710 to 29660721 11 + TSS region transcription start site region 143587
Tssr143588 17 29662246 to 29662250 4 + TSS region transcription start site region 143588
Tssr143589 17 29679247 to 29679270 23 + TSS region transcription start site region 143589
Tssr143590 17 29680527 to 29680538 11 + TSS region transcription start site region 143590
Tssr143591 17 29681169 to 29681181 12 + TSS region transcription start site region 143591
Tssr147235 17 29691249 to 29691250 1 - TSS region transcription start site region 147235
Tssr143592 17 29691258 to 29691279 21 + TSS region transcription start site region 143592
Ccdc167 17 29695977 to 29717017 21040 - protein coding gene coiled-coil domain containing 167
Cpgi8925 17 29716698 to 29717206 508 CpG island CpG island 8925
Tssr147236 17 29716969 to 29717028 59 - TSS region transcription start site region 147236
Tssr143593 17 29717115 to 29717147 32 + TSS region transcription start site region 143593
1810014P07Rik 17 29718784 to 29719152 368 unclassified gene RIKEN cDNA 1810014P07 gene
Cpgi8926 17 29746887 to 29747087 200 CpG island CpG island 8926
Cpgi8927 17 29759961 to 29760132 171 CpG island CpG island 8927
Tssr143594 17 29769347 to 29769357 10 + TSS region transcription start site region 143594
Cpgi8928 17 29773354 to 29773634 280 CpG island CpG island 8928
Tssr143595 17 29774585 to 29774590 5 + TSS region transcription start site region 143595
Gm50016 17 29813629 to 29819387 5758 - lincRNA gene predicted gene, 50016
Mdga1 17 29827956 to 29888431 60475 - protein coding gene MAM domain containing glycosylphosphatidylinositol anchor 1
Cpgi8929 17 29841827 to 29843089 1262 CpG island CpG island 8929
Tssr5061 17 29842176 to 29842177 1 + TSS region transcription start site region 5061
Tssr147237 17 29842314 to 29842325 11 - TSS region transcription start site region 147237
Tssr147238 17 29842342 to 29842355 13 - TSS region transcription start site region 147238
Tssr143596 17 29846530 to 29846535 5 + TSS region transcription start site region 143596
Tssr143597 17 29846547 to 29846558 11 + TSS region transcription start site region 143597
Tssr143598 17 29848220 to 29848223 3 + TSS region transcription start site region 143598
Cpgi8930 17 29849150 to 29849695 545 CpG island CpG island 8930
Cpgi8931 17 29852391 to 29852811 420 CpG island CpG island 8931
Tssr147239 17 29852749 to 29852762 13 - TSS region transcription start site region 147239
Cpgi8932 17 29886488 to 29890243 3755 CpG island CpG island 8932
Tssr5062 17 29886817 to 29886828 11 + TSS region transcription start site region 5062
Tssr5063 17 29886909 to 29886956 47 + TSS region transcription start site region 5063
Tssr147240 17 29888570 to 29888593 23 - TSS region transcription start site region 147240
Gm16758 17 29888903 to 29892214 3311 + lncRNA gene predicted gene, 16758
Gm41559 17 29894349 to 29897071 2722 + lncRNA gene predicted gene, 41559
Cpgi8933 17 29931246 to 29931523 277 CpG island CpG island 8933
Tssr143599 17 29948054 to 29948055 1 + TSS region transcription start site region 143599
Gm50017 17 29979320 to 29982233 2913 + lincRNA gene predicted gene, 50017
Tssr147241 17 29981727 to 29981748 21 - TSS region transcription start site region 147241
Gm50018 17 29983680 to 29983988 308 - pseudogene predicted gene, 50018
Gm22327 17 29984034 to 29984141 107 - snoRNA gene predicted gene, 22327
Gm50019 17 29997956 to 30004691 6735 - bidirectional promoter lncRNA gene predicted gene, 50019
Cpgi8934 17 30004100 to 30005783 1683 CpG island CpG island 8934
Tssr143600 17 30004356 to 30004393 37 + TSS region transcription start site region 143600
Tssr143601 17 30004480 to 30004519 39 + TSS region transcription start site region 143601
Tssr147242 17 30004620 to 30004640 20 - TSS region transcription start site region 147242
Tssr143602 17 30004778 to 30004846 68 + TSS region transcription start site region 143602
Tssr143603 17 30004853 to 30004876 23 + TSS region transcription start site region 143603
Tssr143604 17 30005029 to 30005098 69 + TSS region transcription start site region 143604
Zfand3 17 30005039 to 30210020 204981 + protein coding gene zinc finger, AN1-type domain 3
Tssr147243 17 30005635 to 30005640 5 - TSS region transcription start site region 147243
Tssr143605 17 30005779 to 30005793 14 + TSS region transcription start site region 143605
Tssr143606 17 30005887 to 30005905 18 + TSS region transcription start site region 143606
Tssr143607 17 30007655 to 30007664 9 + TSS region transcription start site region 143607
Tssr143608 17 30011168 to 30011176 8 + TSS region transcription start site region 143608
D17Ertd165e 17 30024657 to 30024897 240 DNA segment DNA segment, Chr 17, ERATO Doi 165, expressed
Tssr143609 17 30060342 to 30060359 17 + TSS region transcription start site region 143609
Tssr143610 17 30077506 to 30077516 10 + TSS region transcription start site region 143610
D17Jcs18 17 30080769 to 30081015 246 DNA segment DNA segment, Chr 17, John C. Schimenti 18
Tssr143611 17 30088785 to 30088795 10 + TSS region transcription start site region 143611
Tssr143612 17 30135173 to 30135193 20 + TSS region transcription start site region 143612
Tssr143613 17 30135194 to 30135210 16 + TSS region transcription start site region 143613
Tssr147244 17 30135365 to 30135396 31 - TSS region transcription start site region 147244
Tssr143614 17 30155961 to 30155968 7 + TSS region transcription start site region 143614
C130068B02Rik 17 30163331 to 30164791 1460 unclassified gene RIKEN cDNA C130068B02 gene
Tssr143615 17 30169838 to 30169843 5 + TSS region transcription start site region 143615
Tuba-rs1 17 30177433 to 30178789 1356 + pseudogene tubulin alpha, related sequence 1
D17Ertd277e 17 30199218 to 30199430 212 DNA segment DNA segment, Chr 17, ERATO Doi 277, expressed
Btbd9 17 30215524 to 30576287 360763 - protein coding gene BTB (POZ) domain containing 9
Tssr147245 17 30229161 to 30229170 9 - TSS region transcription start site region 147245
Gm25049 17 30311079 to 30311151 72 + snRNA gene predicted gene, 25049
D17Mit60 17 30356122 to 30356232 110 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 60
Tssr147246 17 30389368 to 30389370 2 - TSS region transcription start site region 147246
Gm6402 17 30394825 to 30396180 1355 - pseudogene predicted pseudogene 6402
Tssr147247 17 30396055 to 30396060 5 - TSS region transcription start site region 147247
Tssr147248 17 30398258 to 30398263 5 - TSS region transcription start site region 147248
Tssr5064 17 30414717 to 30414729 12 - TSS region transcription start site region 5064
Tssr147249 17 30415844 to 30415848 4 - TSS region transcription start site region 147249
Tssr147250 17 30424372 to 30424375 3 - TSS region transcription start site region 147250