Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:29124139-29424162

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rab44 17 29114145 to 29148980 34835 + protein coding gene RAB44, member RAS oncogene family
Tssr143516 17 29135409 to 29135434 25 + TSS region transcription start site region 143516
Rpl35a-ps3 17 29136972 to 29137304 332 - pseudogene ribosomal protein L35A, pseudogene 3
Tssr143517 17 29142321 to 29142323 2 + TSS region transcription start site region 143517
Tssr147184 17 29148975 to 29148989 14 - TSS region transcription start site region 147184
Gm18271 17 29154480 to 29155277 797 + pseudogene predicted gene, 18271
Cpgi8909 17 29156495 to 29156716 221 CpG island CpG island 8909
Cpne5 17 29156521 to 29238118 81597 - protein coding gene copine V
Tssr147185 17 29167442 to 29167461 19 - TSS region transcription start site region 147185
D17Mit145 17 29187447 to 29187550 103 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 145
Tssr147186 17 29189091 to 29189107 16 - TSS region transcription start site region 147186
Tssr147187 17 29189110 to 29189122 12 - TSS region transcription start site region 147187
Gm50054 17 29223296 to 29223441 145 + unclassified gene predicted gene, 50054
Tammq8 17 29232813 to 29232813 0 QTL tibialis anterior muscle mass QTL 8
Cpgi8910 17 29237220 to 29239186 1966 CpG island CpG island 8910
Tssr147188 17 29237776 to 29237827 51 - TSS region transcription start site region 147188
Tssr147189 17 29238070 to 29238083 13 - TSS region transcription start site region 147189
Tssr147190 17 29238089 to 29238166 77 - TSS region transcription start site region 147190
Tssr147191 17 29238206 to 29238252 46 - TSS region transcription start site region 147191
Gm41557 17 29241034 to 29243885 2851 + lncRNA gene predicted gene, 41557
D17Mit227 17 29242568 to 29242677 109 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 227
Ppil1 17 29250835 to 29263971 13136 - protein coding gene peptidylprolyl isomerase (cyclophilin)-like 1
Tssr147192 17 29261968 to 29261981 13 - TSS region transcription start site region 147192
Cpgi8911 17 29263643 to 29264454 811 CpG island CpG island 8911
Tssr147193 17 29263906 to 29263913 7 - TSS region transcription start site region 147193
Tssr147194 17 29263928 to 29263982 54 - TSS region transcription start site region 147194
Gm50068 17 29263999 to 29265208 1209 + antisense lncRNA gene predicted gene, 50068
Tssr147195 17 29264115 to 29264146 31 - TSS region transcription start site region 147195
D17Mit101 17 29268308 to 29268449 141 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 101
Phl1 17 29268449 to 7657011 -21611438 QTL progressive hearing loss 1
Cpgi8912 17 29268718 to 29269495 777 CpG island CpG island 8912
BC004004 17 29268788 to 29302887 34099 + protein coding gene cDNA sequence BC004004
Tssr143518 17 29268818 to 29268829 11 + TSS region transcription start site region 143518
Tssr143519 17 29268891 to 29268902 11 + TSS region transcription start site region 143519
Tssr143520 17 29268908 to 29268974 66 + TSS region transcription start site region 143520
Tssr143521 17 29274078 to 29274129 51 + TSS region transcription start site region 143521
Tssr143522 17 29274139 to 29274162 23 + TSS region transcription start site region 143522
Tssr143523 17 29274185 to 29274203 18 + TSS region transcription start site region 143523
Tssr143524 17 29274220 to 29274229 9 + TSS region transcription start site region 143524
Tssr143525 17 29294039 to 29294060 21 + TSS region transcription start site region 143525
Tssr143526 17 29308094 to 29308097 3 + TSS region transcription start site region 143526
Gm10045 17 29308138 to 29308620 482 + pseudogene predicted pseudogene 10045
Pi16 17 29318796 to 29328903 10107 + protein coding gene peptidase inhibitor 16
Tssr143527 17 29318850 to 29318886 36 + TSS region transcription start site region 143527
Tssr143528 17 29319183 to 29319203 20 + TSS region transcription start site region 143528
Gm46603 17 29319981 to 29322549 2568 - lncRNA gene predicted gene, 46603
Cpgi8913 17 29322062 to 29322875 813 CpG island CpG island 8913
Cpgi8914 17 29326008 to 29327458 1450 CpG island CpG island 8914
Tssr5060 17 29327100 to 29327110 10 + TSS region transcription start site region 5060
Mtch1 17 29332076 to 29347927 15851 - protein coding gene mitochondrial carrier 1
Tssr147196 17 29332362 to 29332405 43 - TSS region transcription start site region 147196
Tssr147197 17 29342855 to 29342860 5 - TSS region transcription start site region 147197
Cpgi8915 17 29347194 to 29348222 1028 CpG island CpG island 8915
Tssr147198 17 29347753 to 29347792 39 - TSS region transcription start site region 147198
Tssr147199 17 29347800 to 29347811 11 - TSS region transcription start site region 147199
Tssr147200 17 29347902 to 29347940 38 - TSS region transcription start site region 147200
Tssr143529 17 29347990 to 29348001 11 + TSS region transcription start site region 143529
Tssr143530 17 29348016 to 29348030 14 + TSS region transcription start site region 143530
Fgd2 17 29360904 to 29379535 18631 + protein coding gene FYVE, RhoGEF and PH domain containing 2
Tssr143531 17 29360909 to 29360920 11 + TSS region transcription start site region 143531
Tssr143532 17 29360923 to 29360940 17 + TSS region transcription start site region 143532
Tssr143533 17 29360956 to 29360968 12 + TSS region transcription start site region 143533
Tssr143534 17 29360969 to 29360982 13 + TSS region transcription start site region 143534
Tssr147201 17 29368845 to 29368851 6 - TSS region transcription start site region 147201
Tssr143535 17 29368957 to 29368983 26 + TSS region transcription start site region 143535
Tssr143536 17 29368989 to 29369008 19 + TSS region transcription start site region 143536
Tssr143537 17 29369181 to 29369202 21 + TSS region transcription start site region 143537
Tssr143538 17 29370601 to 29370622 21 + TSS region transcription start site region 143538
Tssr143539 17 29376259 to 29376274 15 + TSS region transcription start site region 143539
Tssr143540 17 29381749 to 29381755 6 + TSS region transcription start site region 143540
Cpgi8916 17 29389139 to 29389612 473 CpG island CpG island 8916
Tssr147202 17 29393668 to 29393675 7 - TSS region transcription start site region 147202
Tssr143541 17 29393845 to 29393851 6 + TSS region transcription start site region 143541
Tssr143542 17 29393859 to 29393888 29 + TSS region transcription start site region 143542
Tssr143543 17 29394402 to 29394435 33 + TSS region transcription start site region 143543
Tssr147203 17 29395521 to 29395528 7 - TSS region transcription start site region 147203
Tssr143544 17 29395713 to 29395729 16 + TSS region transcription start site region 143544
Cpgi8917 17 29398097 to 29398453 356 CpG island CpG island 8917
Tssr147204 17 29398115 to 29398146 31 - TSS region transcription start site region 147204
Tssr143545 17 29398464 to 29398487 23 + TSS region transcription start site region 143545
Tssr147205 17 29403345 to 29403358 13 - TSS region transcription start site region 147205
Tssr147206 17 29411177 to 29411226 49 - TSS region transcription start site region 147206
Cpgi8918 17 29416129 to 29416554 425 CpG island CpG island 8918
Tssr147207 17 29423889 to 29423893 4 - TSS region transcription start site region 147207