Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:29117987-29737987

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192 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hst4 17 26286363 to 29495465 3209102 heritable phenotypic marker hybrid sterility 4
Rab44 17 29114145 to 29148980 34835 + protein coding gene RAB44, member RAS oncogene family
Tssr143516 17 29135409 to 29135434 25 + TSS region transcription start site region 143516
Rpl35a-ps3 17 29136972 to 29137304 332 - pseudogene ribosomal protein L35A, pseudogene 3
Tssr143517 17 29142321 to 29142323 2 + TSS region transcription start site region 143517
Tssr147184 17 29148975 to 29148989 14 - TSS region transcription start site region 147184
Gm18271 17 29154480 to 29155277 797 + pseudogene predicted gene, 18271
Cpgi8909 17 29156495 to 29156716 221 CpG island CpG island 8909
Cpne5 17 29156521 to 29238118 81597 - protein coding gene copine V
Tssr147185 17 29167442 to 29167461 19 - TSS region transcription start site region 147185
D17Mit145 17 29187447 to 29187550 103 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 145
Tssr147186 17 29189091 to 29189107 16 - TSS region transcription start site region 147186
Tssr147187 17 29189110 to 29189122 12 - TSS region transcription start site region 147187
Gm50054 17 29223296 to 29223441 145 + unclassified gene predicted gene, 50054
Tammq8 17 29232813 to 29232813 0 QTL tibialis anterior muscle mass QTL 8
Cpgi8910 17 29237220 to 29239186 1966 CpG island CpG island 8910
Tssr147188 17 29237776 to 29237827 51 - TSS region transcription start site region 147188
Tssr147189 17 29238070 to 29238083 13 - TSS region transcription start site region 147189
Tssr147190 17 29238089 to 29238166 77 - TSS region transcription start site region 147190
Tssr147191 17 29238206 to 29238252 46 - TSS region transcription start site region 147191
Gm41557 17 29241034 to 29243885 2851 + lncRNA gene predicted gene, 41557
D17Mit227 17 29242568 to 29242677 109 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 227
Ppil1 17 29250835 to 29263971 13136 - protein coding gene peptidylprolyl isomerase (cyclophilin)-like 1
Tssr147192 17 29261968 to 29261981 13 - TSS region transcription start site region 147192
Cpgi8911 17 29263643 to 29264454 811 CpG island CpG island 8911
Tssr147193 17 29263906 to 29263913 7 - TSS region transcription start site region 147193
Tssr147194 17 29263928 to 29263982 54 - TSS region transcription start site region 147194
Gm50068 17 29263999 to 29265208 1209 + antisense lncRNA gene predicted gene, 50068
Tssr147195 17 29264115 to 29264146 31 - TSS region transcription start site region 147195
D17Mit101 17 29268308 to 29268449 141 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 101
Phl1 17 29268449 to 7657011 -21611438 QTL progressive hearing loss 1
Cpgi8912 17 29268718 to 29269495 777 CpG island CpG island 8912
BC004004 17 29268788 to 29302887 34099 + protein coding gene cDNA sequence BC004004
Tssr143518 17 29268818 to 29268829 11 + TSS region transcription start site region 143518
Tssr143519 17 29268891 to 29268902 11 + TSS region transcription start site region 143519
Tssr143520 17 29268908 to 29268974 66 + TSS region transcription start site region 143520
Tssr143521 17 29274078 to 29274129 51 + TSS region transcription start site region 143521
Tssr143522 17 29274139 to 29274162 23 + TSS region transcription start site region 143522
Tssr143523 17 29274185 to 29274203 18 + TSS region transcription start site region 143523
Tssr143524 17 29274220 to 29274229 9 + TSS region transcription start site region 143524
Tssr143525 17 29294039 to 29294060 21 + TSS region transcription start site region 143525
Tssr143526 17 29308094 to 29308097 3 + TSS region transcription start site region 143526
Gm10045 17 29308138 to 29308620 482 + pseudogene predicted pseudogene 10045
Pi16 17 29318796 to 29328903 10107 + protein coding gene peptidase inhibitor 16
Tssr143527 17 29318850 to 29318886 36 + TSS region transcription start site region 143527
Tssr143528 17 29319183 to 29319203 20 + TSS region transcription start site region 143528
Gm46603 17 29319981 to 29322549 2568 - lncRNA gene predicted gene, 46603
Cpgi8913 17 29322062 to 29322875 813 CpG island CpG island 8913
Cpgi8914 17 29326008 to 29327458 1450 CpG island CpG island 8914
Tssr5060 17 29327100 to 29327110 10 + TSS region transcription start site region 5060
Mtch1 17 29332076 to 29347927 15851 - protein coding gene mitochondrial carrier 1
Tssr147196 17 29332362 to 29332405 43 - TSS region transcription start site region 147196
Tssr147197 17 29342855 to 29342860 5 - TSS region transcription start site region 147197
Cpgi8915 17 29347194 to 29348222 1028 CpG island CpG island 8915
Tssr147198 17 29347753 to 29347792 39 - TSS region transcription start site region 147198
Tssr147199 17 29347800 to 29347811 11 - TSS region transcription start site region 147199
Tssr147200 17 29347902 to 29347940 38 - TSS region transcription start site region 147200
Tssr143529 17 29347990 to 29348001 11 + TSS region transcription start site region 143529
Tssr143530 17 29348016 to 29348030 14 + TSS region transcription start site region 143530
Fgd2 17 29360904 to 29379535 18631 + protein coding gene FYVE, RhoGEF and PH domain containing 2
Tssr143531 17 29360909 to 29360920 11 + TSS region transcription start site region 143531
Tssr143532 17 29360923 to 29360940 17 + TSS region transcription start site region 143532
Tssr143533 17 29360956 to 29360968 12 + TSS region transcription start site region 143533
Tssr143534 17 29360969 to 29360982 13 + TSS region transcription start site region 143534
Tssr147201 17 29368845 to 29368851 6 - TSS region transcription start site region 147201
Tssr143535 17 29368957 to 29368983 26 + TSS region transcription start site region 143535
Tssr143536 17 29368989 to 29369008 19 + TSS region transcription start site region 143536
Tssr143537 17 29369181 to 29369202 21 + TSS region transcription start site region 143537
Tssr143538 17 29370601 to 29370622 21 + TSS region transcription start site region 143538
Tssr143539 17 29376259 to 29376274 15 + TSS region transcription start site region 143539
Tssr143540 17 29381749 to 29381755 6 + TSS region transcription start site region 143540
Cpgi8916 17 29389139 to 29389612 473 CpG island CpG island 8916
Tssr147202 17 29393668 to 29393675 7 - TSS region transcription start site region 147202
Tssr143541 17 29393845 to 29393851 6 + TSS region transcription start site region 143541
Tssr143542 17 29393859 to 29393888 29 + TSS region transcription start site region 143542
Tssr143543 17 29394402 to 29394435 33 + TSS region transcription start site region 143543
Tssr147203 17 29395521 to 29395528 7 - TSS region transcription start site region 147203
Tssr143544 17 29395713 to 29395729 16 + TSS region transcription start site region 143544
Cpgi8917 17 29398097 to 29398453 356 CpG island CpG island 8917
Tssr147204 17 29398115 to 29398146 31 - TSS region transcription start site region 147204
Tssr143545 17 29398464 to 29398487 23 + TSS region transcription start site region 143545
Tssr147205 17 29403345 to 29403358 13 - TSS region transcription start site region 147205
Tssr147206 17 29411177 to 29411226 49 - TSS region transcription start site region 147206
Cpgi8918 17 29416129 to 29416554 425 CpG island CpG island 8918
Tssr147207 17 29423889 to 29423893 4 - TSS region transcription start site region 147207
Asrq8a 17 29427987 to 29427987 0 QTL acoustic startle response 8a
Tssr147208 17 29428961 to 29428975 14 - TSS region transcription start site region 147208
Tssr143546 17 29429077 to 29429099 22 + TSS region transcription start site region 143546
Tssr147209 17 29430213 to 29430217 4 - TSS region transcription start site region 147209
Tssr147210 17 29430522 to 29430531 9 - TSS region transcription start site region 147210
Tssr147211 17 29430543 to 29430551 8 - TSS region transcription start site region 147211
Gm36486 17 29430798 to 29437448 6650 - lncRNA gene predicted gene, 36486
Tssr147212 17 29434675 to 29434694 19 - TSS region transcription start site region 147212
Tssr147213 17 29434708 to 29434721 13 - TSS region transcription start site region 147213
Gm36199 17 29434727 to 29466079 31352 + lncRNA gene predicted gene, 36199
Tssr147214 17 29435429 to 29435440 11 - TSS region transcription start site region 147214
Tssr147215 17 29435446 to 29435460 14 - TSS region transcription start site region 147215
Tssr147216 17 29436949 to 29436986 37 - TSS region transcription start site region 147216
Tssr147217 17 29437012 to 29437070 58 - TSS region transcription start site region 147217
Tssr147218 17 29437096 to 29437114 18 - TSS region transcription start site region 147218
Cpgi8919 17 29437100 to 29437559 459 CpG island CpG island 8919
Tssr147219 17 29437253 to 29437255 2 - TSS region transcription start site region 147219
Tssr147220 17 29437304 to 29437336 32 - TSS region transcription start site region 147220
Tssr143547 17 29440128 to 29440137 9 + TSS region transcription start site region 143547
Tssr147221 17 29443846 to 29443861 15 - TSS region transcription start site region 147221
Gm26885 17 29447040 to 29467780 20740 - lincRNA gene predicted gene, 26885
Tssr147222 17 29464125 to 29464161 36 - TSS region transcription start site region 147222
Tssr143548 17 29464465 to 29464471 6 + TSS region transcription start site region 143548
Tssr143549 17 29465047 to 29465057 10 + TSS region transcription start site region 143549
Tssr147223 17 29465483 to 29465493 10 - TSS region transcription start site region 147223
Tssr143550 17 29467808 to 29467824 16 + TSS region transcription start site region 143550
Tssr147224 17 29467924 to 29467947 23 - TSS region transcription start site region 147224
Tssr143551 17 29472998 to 29473032 34 + TSS region transcription start site region 143551
Gm41558 17 29483527 to 29487346 3819 + lncRNA gene predicted gene, 41558
Tssr143552 17 29487445 to 29487456 11 + TSS region transcription start site region 143552
Tssr147225 17 29489073 to 29489085 12 - TSS region transcription start site region 147225
Tssr143553 17 29489230 to 29489237 7 + TSS region transcription start site region 143553
Tssr143554 17 29489338 to 29489348 10 + TSS region transcription start site region 143554
Tssr143555 17 29489679 to 29489692 13 + TSS region transcription start site region 143555
Cpgi8920 17 29489722 to 29492243 2521 CpG island CpG island 8920
Tssr143556 17 29489800 to 29489817 17 + TSS region transcription start site region 143556
Tssr147226 17 29490284 to 29490310 26 - TSS region transcription start site region 147226
Tssr143557 17 29490468 to 29490475 7 + TSS region transcription start site region 143557
Tssr143558 17 29490606 to 29490616 10 + TSS region transcription start site region 143558
Tssr143559 17 29490637 to 29490655 18 + TSS region transcription start site region 143559
Tssr143560 17 29490688 to 29490700 12 + TSS region transcription start site region 143560
Tssr143561 17 29490752 to 29490767 15 + TSS region transcription start site region 143561
Tssr143562 17 29490775 to 29490799 24 + TSS region transcription start site region 143562
Tssr143563 17 29490823 to 29490839 16 + TSS region transcription start site region 143563
Tssr143564 17 29490846 to 29490862 16 + TSS region transcription start site region 143564
Tssr143565 17 29490904 to 29490915 11 + TSS region transcription start site region 143565
Hst6 17 29491045 to 31681724 2190679 heritable phenotypic marker hybrid sterility 6
Pim1 17 29491045 to 29495465 4420 + protein coding gene proviral integration site 1
Tssr143566 17 29491343 to 29491357 14 + TSS region transcription start site region 143566
Tssr143567 17 29491642 to 29491673 31 + TSS region transcription start site region 143567
Tssr143568 17 29491725 to 29491738 13 + TSS region transcription start site region 143568
Tssr143569 17 29491787 to 29491798 11 + TSS region transcription start site region 143569
Tssr143570 17 29491800 to 29491805 5 + TSS region transcription start site region 143570
Pas19 17 29492190 to 34535463 5043273 QTL pulmonary adenoma susceptibility 19
D17Mit23 17 29492190 to 29492323 133 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 23
Tssr147227 17 29492342 to 29492376 34 - TSS region transcription start site region 147227
Tssr147228 17 29492840 to 29492859 19 - TSS region transcription start site region 147228
Tssr143571 17 29492997 to 29493009 12 + TSS region transcription start site region 143571
Tssr143572 17 29493037 to 29493105 68 + TSS region transcription start site region 143572
Tssr143573 17 29493114 to 29493128 14 + TSS region transcription start site region 143573
Tssr143574 17 29493132 to 29493143 11 + TSS region transcription start site region 143574
Tssr143575 17 29493169 to 29493183 14 + TSS region transcription start site region 143575
Tssr143576 17 29494500 to 29494523 23 + TSS region transcription start site region 143576
Tssr143577 17 29494627 to 29494639 12 + TSS region transcription start site region 143577
Tssr143578 17 29494916 to 29494942 26 + TSS region transcription start site region 143578
Tssr143579 17 29495635 to 29495657 22 + TSS region transcription start site region 143579
Gm17657 17 29518642 to 29549638 30996 - protein coding gene predicted gene, 17657
Cpgi8921 17 29519283 to 29519692 409 CpG island CpG island 8921
Tssr147229 17 29519823 to 29519853 30 - TSS region transcription start site region 147229
Tmem217 17 29526007 to 29552385 26378 - protein coding gene transmembrane protein 217
Tssr147230 17 29549588 to 29549598 10 - TSS region transcription start site region 147230
Tssr147231 17 29549631 to 29549643 12 - TSS region transcription start site region 147231
Cpgi8922 17 29549639 to 29550263 624 CpG island CpG island 8922
Tssr143580 17 29549783 to 29549798 15 + TSS region transcription start site region 143580
Tbc1d22b 17 29549788 to 29606894 57106 + protein coding gene TBC1 domain family, member 22B
Gm28052 17 29549799 to 29682012 132213 + unclassified non-coding RNA gene predicted gene, 28052
Tbc1d22bos 17 29578816 to 29596305 17489 - antisense lncRNA gene TBC1 domain family, member 22B, opposite strand
Tssr147232 17 29579429 to 29579451 22 - TSS region transcription start site region 147232
Mir7667 17 29595538 to 29595600 62 + miRNA gene microRNA 7667
2010106G04Rik 17 29614467 to 29614768 301 unclassified gene RIKEN cDNA 2010106G04 gene
Cpgi8923 17 29614519 to 29615621 1102 CpG island CpG island 8923
Tssr143581 17 29614786 to 29614797 11 + TSS region transcription start site region 143581
Rnf8 17 29614789 to 29641664 26875 + protein coding gene ring finger protein 8
Tssr143582 17 29614800 to 29614844 44 + TSS region transcription start site region 143582
Tssr143583 17 29614848 to 29614928 80 + TSS region transcription start site region 143583
Gm28043 17 29614876 to 29703359 88483 + protein coding gene predicted gene, 28043
Tssr143584 17 29614947 to 29614958 11 + TSS region transcription start site region 143584
4930563A19Rik 17 29615282 to 29615547 265 unclassified gene RIKEN cDNA 4930563A19 gene
Tssr143585 17 29637005 to 29637047 42 + TSS region transcription start site region 143585
Gm20161 17 29652228 to 29658336 6108 - lncRNA gene predicted gene, 20161
Tssr147233 17 29658304 to 29658334 30 - TSS region transcription start site region 147233
Tssr147234 17 29658337 to 29658352 15 - TSS region transcription start site region 147234
Cpgi8924 17 29660400 to 29661312 912 CpG island CpG island 8924
Cmtr1 17 29660595 to 29705979 45384 + protein coding gene cap methyltransferase 1
Tssr143586 17 29660614 to 29660706 92 + TSS region transcription start site region 143586
Tssr143587 17 29660710 to 29660721 11 + TSS region transcription start site region 143587
Tssr143588 17 29662246 to 29662250 4 + TSS region transcription start site region 143588
Tssr143589 17 29679247 to 29679270 23 + TSS region transcription start site region 143589
Tssr143590 17 29680527 to 29680538 11 + TSS region transcription start site region 143590
Tssr143591 17 29681169 to 29681181 12 + TSS region transcription start site region 143591
Tssr147235 17 29691249 to 29691250 1 - TSS region transcription start site region 147235
Tssr143592 17 29691258 to 29691279 21 + TSS region transcription start site region 143592
Ccdc167 17 29695977 to 29717017 21040 - protein coding gene coiled-coil domain containing 167
Cpgi8925 17 29716698 to 29717206 508 CpG island CpG island 8925
Tssr147236 17 29716969 to 29717028 59 - TSS region transcription start site region 147236
Tssr143593 17 29717115 to 29717147 32 + TSS region transcription start site region 143593
1810014P07Rik 17 29718784 to 29719152 368 unclassified gene RIKEN cDNA 1810014P07 gene